1.5.0-DEV-f014071421.log

Julia Version 1.5.0-DEV.232
Commit f014071421 (2020-02-03 21:36 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
  Installed SortingAlgorithms ───────── v0.3.1
  Installed EllipsisNotation ────────── v0.4.0
  Installed AbstractFFTs ────────────── v0.5.0
  Installed Measures ────────────────── v0.3.1
  Installed OffsetArrays ────────────── v1.0.2
  Installed BinDeps ─────────────────── v1.0.0
  Installed ImageAxes ───────────────── v0.6.2
  Installed MIRT ────────────────────── v0.9.1
  Installed RecipesBase ─────────────── v0.7.0
  Installed CMakeWrapper ────────────── v0.2.3
  Installed PlotUtils ───────────────── v0.6.2
  Installed HDF5 ────────────────────── v0.12.5
  Installed LinearMapsAA ────────────── v0.4.0
  Installed MIRTio ──────────────────── v0.2.1
  Installed StaticArrays ────────────── v0.12.1
  Installed CMake ───────────────────── v1.1.2
  Installed ImageFiltering ──────────── v0.6.11
  Installed RangeArrays ─────────────── v0.3.2
  Installed Missings ────────────────── v0.4.3
  Installed ColorVectorSpace ────────── v0.8.3
  Installed NFFT ────────────────────── v0.4.0
  Installed Wavelets ────────────────── v0.9.0
  Installed FFTW_jll ────────────────── v3.3.9+3
  Installed Requires ────────────────── v1.0.1
  Installed Colors ──────────────────── v0.11.2
  Installed MacroTools ──────────────── v0.5.3
  Installed MKL_jll ─────────────────── v2019.0.117+2
  Installed ColorTypes ──────────────── v0.9.1
  Installed DSP ─────────────────────── v0.6.3
  Installed Reexport ────────────────── v0.2.0
  Installed SpecialFunctions ────────── v0.9.0
  Installed SimpleTraits ────────────── v0.9.1
  Installed AxisAlgorithms ──────────── v1.0.0
  Installed GeometryTypes ───────────── v0.7.7
  Installed IntelOpenMP_jll ─────────── v2018.0.3+0
  Installed JSON ────────────────────── v0.21.0
  Installed ImageCore ───────────────── v0.8.11
  Installed Ratios ──────────────────── v0.3.1
  Installed PaddedViews ─────────────── v0.5.1
  Installed Blosc ───────────────────── v0.5.1
  Installed ImageTransformations ────── v0.8.3
  Installed FFTW ────────────────────── v1.2.0
  Installed ImageMetadata ───────────── v0.9.0
  Installed IndirectArrays ──────────── v0.5.1
  Installed Plots ───────────────────── v0.28.4
  Installed LaTeXStrings ────────────── v1.0.3
  Installed FFMPEG ──────────────────── v0.2.4
  Installed StatsBase ───────────────── v0.32.0
  Installed Showoff ─────────────────── v0.3.1
  Installed BenchmarkTools ──────────── v0.4.3
  Installed LinearMaps ──────────────── v2.6.1
  Installed Rotations ───────────────── v0.13.0
  Installed CustomUnitRanges ────────── v1.0.0
  Installed FileIO ──────────────────── v1.2.1
  Installed MappedArrays ────────────── v0.2.2
  Installed BinaryProvider ──────────── v0.5.8
  Installed CoordinateTransformations ─ v0.5.0
  Installed TiledIteration ──────────── v0.2.4
  Installed MosaicViews ─────────────── v0.1.0
  Installed AxisArrays ──────────────── v0.3.3
  Installed IterTools ───────────────── v1.3.0
  Installed PlotThemes ──────────────── v1.0.1
  Installed DataAPI ─────────────────── v1.1.0
  Installed DataStructures ──────────── v0.17.9
  Installed NaNMath ─────────────────── v0.3.3
  Installed Parsers ─────────────────── v0.3.11
  Installed OrderedCollections ──────── v1.1.0
  Installed Parameters ──────────────── v0.12.0
  Installed OpenSpecFun_jll ─────────── v0.5.3+1
  Installed Contour ─────────────────── v0.5.1
  Installed ComputationalResources ──── v0.3.0
  Installed IdentityRanges ──────────── v0.3.1
  Installed URIParser ───────────────── v0.4.0
  Installed IntervalSets ────────────── v0.4.0
  Installed WoodburyMatrices ────────── v0.5.0
  Installed Graphics ────────────────── v1.0.1
  Installed FixedPointNumbers ───────── v0.6.1
  Installed FFTViews ────────────────── v0.3.1
  Installed Compat ──────────────────── v2.2.0
  Installed CatIndices ──────────────── v0.2.1
  Installed Polynomials ─────────────── v0.6.0
  Installed GR ──────────────────────── v0.44.0
  Installed Interpolations ──────────── v0.12.8
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   Updating `~/.julia/environments/v1.5/Project.toml`
  [7035ae7a] + MIRT v0.9.1
   Updating `~/.julia/environments/v1.5/Manifest.toml`
  [621f4979] + AbstractFFTs v0.5.0
  [13072b0f] + AxisAlgorithms v1.0.0
  [39de3d68] + AxisArrays v0.3.3
  [6e4b80f9] + BenchmarkTools v0.4.3
  [9e28174c] + BinDeps v1.0.0
  [b99e7846] + BinaryProvider v0.5.8
  [a74b3585] + Blosc v0.5.1
  [631607c0] + CMake v1.1.2
  [d5fb7624] + CMakeWrapper v0.2.3
  [aafaddc9] + CatIndices v0.2.1
  [3da002f7] + ColorTypes v0.9.1
  [c3611d14] + ColorVectorSpace v0.8.3
  [5ae59095] + Colors v0.11.2
  [34da2185] + Compat v2.2.0
  [ed09eef8] + ComputationalResources v0.3.0
  [d38c429a] + Contour v0.5.1
  [150eb455] + CoordinateTransformations v0.5.0
  [dc8bdbbb] + CustomUnitRanges v1.0.0
  [717857b8] + DSP v0.6.3
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.9
  [da5c29d0] + EllipsisNotation v0.4.0
  [c87230d0] + FFMPEG v0.2.4
  [4f61f5a4] + FFTViews v0.3.1
  [7a1cc6ca] + FFTW v1.2.0
  [f5851436] + FFTW_jll v3.3.9+3
  [5789e2e9] + FileIO v1.2.1
  [53c48c17] + FixedPointNumbers v0.6.1
  [28b8d3ca] + GR v0.44.0
  [4d00f742] + GeometryTypes v0.7.7
  [a2bd30eb] + Graphics v1.0.1
  [f67ccb44] + HDF5 v0.12.5
  [bbac6d45] + IdentityRanges v0.3.1
  [2803e5a7] + ImageAxes v0.6.2
  [a09fc81d] + ImageCore v0.8.11
  [6a3955dd] + ImageFiltering v0.6.11
  [bc367c6b] + ImageMetadata v0.9.0
  [02fcd773] + ImageTransformations v0.8.3
  [9b13fd28] + IndirectArrays v0.5.1
  [1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
  [a98d9a8b] + Interpolations v0.12.8
  [8197267c] + IntervalSets v0.4.0
  [c8e1da08] + IterTools v1.3.0
  [682c06a0] + JSON v0.21.0
  [b964fa9f] + LaTeXStrings v1.0.3
  [7a12625a] + LinearMaps v2.6.1
  [599c1a8e] + LinearMapsAA v0.4.0
  [7035ae7a] + MIRT v0.9.1
  [274281c4] + MIRTio v0.2.1
  [856f044c] + MKL_jll v2019.0.117+2
  [1914dd2f] + MacroTools v0.5.3
  [dbb5928d] + MappedArrays v0.2.2
  [442fdcdd] + Measures v0.3.1
  [e1d29d7a] + Missings v0.4.3
  [e94cdb99] + MosaicViews v0.1.0
  [efe261a4] + NFFT v0.4.0
  [77ba4419] + NaNMath v0.3.3
  [6fe1bfb0] + OffsetArrays v1.0.2
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [bac558e1] + OrderedCollections v1.1.0
  [5432bcbf] + PaddedViews v0.5.1
  [d96e819e] + Parameters v0.12.0
  [69de0a69] + Parsers v0.3.11
  [ccf2f8ad] + PlotThemes v1.0.1
  [995b91a9] + PlotUtils v0.6.2
  [91a5bcdd] + Plots v0.28.4
  [f27b6e38] + Polynomials v0.6.0
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.3.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v1.0.1
  [6038ab10] + Rotations v0.13.0
  [992d4aef] + Showoff v0.3.1
  [699a6c99] + SimpleTraits v0.9.1
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.9.0
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [06e1c1a7] + TiledIteration v0.2.4
  [30578b45] + URIParser v0.4.0
  [29a6e085] + Wavelets v0.9.0
  [efce3f68] + WoodburyMatrices v0.5.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Building CMake ─→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
   Building Blosc ─→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
   Building HDF5 ──→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
   Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
   Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
   Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
   Building Plots ─→ `~/.julia/packages/Plots/qZHsp/deps/build.log`
    Testing MIRT
Status `/tmp/jl_18xxLd/Manifest.toml`
  [621f4979] AbstractFFTs v0.5.0
  [13072b0f] AxisAlgorithms v1.0.0
  [39de3d68] AxisArrays v0.3.3
  [6e4b80f9] BenchmarkTools v0.4.3
  [9e28174c] BinDeps v1.0.0
  [b99e7846] BinaryProvider v0.5.8
  [a74b3585] Blosc v0.5.1
  [631607c0] CMake v1.1.2
  [d5fb7624] CMakeWrapper v0.2.3
  [aafaddc9] CatIndices v0.2.1
  [3da002f7] ColorTypes v0.9.1
  [c3611d14] ColorVectorSpace v0.8.3
  [5ae59095] Colors v0.11.2
  [34da2185] Compat v2.2.0
  [ed09eef8] ComputationalResources v0.3.0
  [d38c429a] Contour v0.5.1
  [150eb455] CoordinateTransformations v0.5.0
  [dc8bdbbb] CustomUnitRanges v1.0.0
  [717857b8] DSP v0.6.3
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.9
  [da5c29d0] EllipsisNotation v0.4.0
  [c87230d0] FFMPEG v0.2.4
  [4f61f5a4] FFTViews v0.3.1
  [7a1cc6ca] FFTW v1.2.0
  [f5851436] FFTW_jll v3.3.9+3
  [5789e2e9] FileIO v1.2.1
  [53c48c17] FixedPointNumbers v0.6.1
  [28b8d3ca] GR v0.44.0
  [4d00f742] GeometryTypes v0.7.7
  [a2bd30eb] Graphics v1.0.1
  [f67ccb44] HDF5 v0.12.5
  [bbac6d45] IdentityRanges v0.3.1
  [2803e5a7] ImageAxes v0.6.2
  [a09fc81d] ImageCore v0.8.11
  [6a3955dd] ImageFiltering v0.6.11
  [bc367c6b] ImageMetadata v0.9.0
  [02fcd773] ImageTransformations v0.8.3
  [9b13fd28] IndirectArrays v0.5.1
  [1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
  [a98d9a8b] Interpolations v0.12.8
  [8197267c] IntervalSets v0.4.0
  [c8e1da08] IterTools v1.3.0
  [682c06a0] JSON v0.21.0
  [b964fa9f] LaTeXStrings v1.0.3
  [7a12625a] LinearMaps v2.6.1
  [599c1a8e] LinearMapsAA v0.4.0
  [7035ae7a] MIRT v0.9.1
  [274281c4] MIRTio v0.2.1
  [856f044c] MKL_jll v2019.0.117+2
  [1914dd2f] MacroTools v0.5.3
  [dbb5928d] MappedArrays v0.2.2
  [442fdcdd] Measures v0.3.1
  [e1d29d7a] Missings v0.4.3
  [e94cdb99] MosaicViews v0.1.0
  [efe261a4] NFFT v0.4.0
  [77ba4419] NaNMath v0.3.3
  [6fe1bfb0] OffsetArrays v1.0.2
  [efe28fd5] OpenSpecFun_jll v0.5.3+1
  [bac558e1] OrderedCollections v1.1.0
  [5432bcbf] PaddedViews v0.5.1
  [d96e819e] Parameters v0.12.0
  [69de0a69] Parsers v0.3.11
  [ccf2f8ad] PlotThemes v1.0.1
  [995b91a9] PlotUtils v0.6.2
  [91a5bcdd] Plots v0.28.4
  [f27b6e38] Polynomials v0.6.0
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.3.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.0.1
  [6038ab10] Rotations v0.13.0
  [992d4aef] Showoff v0.3.1
  [699a6c99] SimpleTraits v0.9.1
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.9.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [06e1c1a7] TiledIteration v0.2.4
  [30578b45] URIParser v0.4.0
  [29a6e085] Wavelets v0.9.0
  [efce3f68] WoodburyMatrices v0.5.0
  [2a0f44e3] Base64 
  [ade2ca70] Dates 
  [8bb1440f] DelimitedFiles 
  [8ba89e20] Distributed 
  [b77e0a4c] InteractiveUtils 
  [76f85450] LibGit2 
  [8f399da3] Libdl 
  [37e2e46d] LinearAlgebra 
  [56ddb016] Logging 
  [d6f4376e] Markdown 
  [a63ad114] Mmap 
  [44cfe95a] Pkg 
  [de0858da] Printf 
  [3fa0cd96] REPL 
  [9a3f8284] Random 
  [ea8e919c] SHA 
  [9e88b42a] Serialization 
  [1a1011a3] SharedArrays 
  [6462fe0b] Sockets 
  [2f01184e] SparseArrays 
  [10745b16] Statistics 
  [8dfed614] Test 
  [cf7118a7] UUIDs 
  [4ec0a83e] Unicode 
Test Summary: | Pass  Total
MIRT:../data  |    1      1
Test Summary:  | Pass  Total
MIRT:algorithm |   12     12
┌ Warning: fov: x range -0.5 0.5, cx=3, rx=1
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/fbp/ellipsoid_im.jl:324
┌ Warning: fov: y range -0.5 0.5, cy=3, ry=1
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/fbp/ellipsoid_im.jl:328
┌ Warning: fov: z range -0.5 0.5, cz=3, rz=1
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/fbp/ellipsoid_im.jl:333
y points not sorted in ascending order
y points not sorted in ascending order
y points not sorted in ascending order
y points not sorted in ascending order
Test Summary: | Pass  Total
MIRT:fbp      |   51     51
Test Summary: | Pass  Total
MIRT:io       |    8      8
[ Info: 1D tests with Complex{Float32}
[ Info: 2D tests with Complex{Float32}
┌ Warning: magnitude at jim.jl 154 jim##kw(): 
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/plot/jim.jl:155
┌ Warning: magnitude at jim.jl 154 jim##kw(): 
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/plot/jim.jl:155
┌ Warning: magnitude at jim.jl 154 jim##kw(): 
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/plot/jim.jl:155
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
typeof(tmp) = Plots.Plot{Plots.GRBackend}
max_percent_diff(f2, s2) = 0.8241078453660797
max_percent_diff(f2, s2) = 2.4569255215209425e-8
max_percent_diff(f2, s2) = 2.7952325202493746
max_percent_diff(f2, s2) = 0
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
auto-adjust Y tick marks
max_percent_diff(f3, s3) = 5.741301967425953
max_percent_diff(f3, s3) = 1.472517119802518
max_percent_diff(f3, s3) = 5.7147633417516515
max_percent_diff(f3, s3) = 0
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
auto-adjust Y tick marks
Test Summary: | Pass  Total
MIRT:mri      |   29     29
┌ Warning: converting Int64 to Complex{Float64}
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/nufft/nufft.jl:44
┌ Warning: converting Int64 to Complex{Float32}
└ @ MIRT ~/.julia/packages/MIRT/NXU40/src/nufft/nufft.jl:44
Test Summary: | Pass  Total
MIRT:nufft    |   74     74
Test Summary: | Pass  Total
MIRT:plot     |    2      2
Test Summary:   | Pass  Total
MIRT:regularize |    7      7
MIRT:system: Test Failed at /home/pkgeval/.julia/packages/MIRT/NXU40/src/system/Afft.jl:39
  Expression: A' * [1, 0, 0, 0, 0] == (ones(3, 2))[:]
   Evaluated: Complex{Float64}[1.0 + 0.0im 1.0 + 0.0im; 1.0 + 0.0im 1.0 + 0.0im; 1.0 + 0.0im 1.0 + 0.0im] == [1.0, 1.0, 1.0, 1.0, 1.0, 1.0]
Stacktrace:
 [1] Afft(::Symbol) at /home/pkgeval/.julia/packages/MIRT/NXU40/src/system/Afft.jl:39
 [2] top-level scope at /home/pkgeval/.julia/packages/MIRT/NXU40/src/system/z-test.jl:8
 [3] include(::Module, ::String) at ./Base.jl:377
 [4] include at /home/pkgeval/.julia/packages/MIRT/NXU40/src/MIRT.jl:7 [inlined]
 [5] macro expansion at /home/pkgeval/.julia/packages/MIRT/NXU40/test/test_all_mirt.jl:36 [inlined]
 [6] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114 [inlined]
 [7] test_all_mirt() at /home/pkgeval/.julia/packages/MIRT/NXU40/test/test_all_mirt.jl:34
Test Summary: | Pass  Fail  Total
MIRT:system   |   40     1     41
ERROR: LoadError: Some tests did not pass: 40 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MIRT/NXU40/test/runtests.jl:14
ERROR: Package MIRT errored during testing
Stacktrace:
 [1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
 [2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
 [3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
 [4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
 [5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
 [6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
 [7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
 [8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
 [9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
 [10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
 [11] top-level scope at none:13