-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path1.5.0-DEV-f014071421.log
307 lines (302 loc) · 13.1 KB
/
1.5.0-DEV-f014071421.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
Julia Version 1.5.0-DEV.232
Commit f014071421 (2020-02-03 21:36 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ────── v0.3.1
Installed PositiveFactorizations ─ v0.2.3
Installed FillArrays ───────────── v0.8.4
Installed AbstractFFTs ─────────── v0.5.0
Installed CommonSubexpressions ─── v0.2.0
Installed OffsetArrays ─────────── v1.0.2
Installed NLSolversBase ────────── v7.6.1
Installed Kpax3 ────────────────── v0.5.2
Installed RecipesBase ──────────── v0.7.0
Installed StatsFuns ────────────── v0.9.3
Installed BinDeps ──────────────── v1.0.0
Installed QuadGK ───────────────── v2.3.1
Installed Arpack_jll ───────────── v3.5.0+2
Installed JLD2 ─────────────────── v0.1.11
Installed Missings ─────────────── v0.4.3
Installed StaticArrays ─────────── v0.12.1
Installed ForwardDiff ──────────── v0.10.9
Installed CodecZlib ────────────── v0.6.0
Installed FFTW_jll ─────────────── v3.3.9+3
Installed FiniteDiff ───────────── v2.1.0
Installed Rmath ────────────────── v0.6.0
Installed Requires ─────────────── v1.0.1
Installed MKL_jll ──────────────── v2019.0.117+2
Installed KernelDensity ────────── v0.5.1
Installed DiffRules ────────────── v1.0.0
Installed Reexport ─────────────── v0.2.0
Installed SpecialFunctions ─────── v0.8.0
Installed AxisAlgorithms ───────── v1.0.0
Installed TranscodingStreams ───── v0.9.5
Installed IntelOpenMP_jll ──────── v2018.0.3+0
Installed OpenBLAS_jll ─────────── v0.3.7+5
Installed Ratios ───────────────── v0.3.1
Installed ArrayInterface ───────── v2.4.1
Installed FFTW ─────────────────── v1.2.0
Installed Clustering ───────────── v0.13.3
Installed Distributions ────────── v0.22.4
Installed NearestNeighbors ─────── v0.4.4
Installed PDMats ───────────────── v0.9.11
Installed Distances ────────────── v0.8.2
Installed Arpack ───────────────── v0.4.0
Installed StatsBase ────────────── v0.32.0
Installed DiffResults ──────────── v1.0.2
Installed FileIO ───────────────── v1.2.1
Installed BinaryProvider ───────── v0.5.8
Installed DataAPI ──────────────── v1.1.0
Installed DataStructures ───────── v0.17.9
Installed Optim ────────────────── v0.20.1
Installed Parameters ───────────── v0.12.0
Installed LineSearches ─────────── v7.0.1
Installed WoodburyMatrices ─────── v0.5.0
Installed NaNMath ──────────────── v0.3.3
Installed URIParser ────────────── v0.4.0
Installed OrderedCollections ───── v1.1.0
Installed Compat ───────────────── v2.2.0
Installed Interpolations ───────── v0.12.8
#=#=# ######################################################################## 100.0%
#=#=# ################ 22.6%##################################################### 73.8%######################################################################## 100.0%
#=#=# ################################################### 71.3%######################################################################## 100.0%
#=#=# # 1.5%#### 5.9%######### 12.5%############## 20.4%###################### 30.9%############################### 43.4%########################################### 59.9%############################################################# 84.9%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[ad72c4b6] + Kpax3 v0.5.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.4.1
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[aaaa29a8] + Clustering v0.13.3
[944b1d66] + CodecZlib v0.6.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.4
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.1.0
[f6369f11] + ForwardDiff v0.10.9
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.8
[033835bb] + JLD2 v0.1.11
[5ab0869b] + KernelDensity v0.5.1
[ad72c4b6] + Kpax3 v0.5.2
[d3d80556] + LineSearches v7.0.1
[856f044c] + MKL_jll v2019.0.117+2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+5
[429524aa] + Optim v0.20.1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.0
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib ───────→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Testing Kpax3
Status `/tmp/jl_6gMQn9/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[4fba245c] ArrayInterface v2.4.1
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v1.0.0
[b99e7846] BinaryProvider v0.5.8
[aaaa29a8] Clustering v0.13.3
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.9.1
[5ae59095] Colors v0.11.2
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.9
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.22.4
[c87230d0] FFMPEG v0.2.4
[7a1cc6ca] FFTW v1.2.0
[f5851436] FFTW_jll v3.3.9+3
[5789e2e9] FileIO v1.2.1
[1a297f60] FillArrays v0.8.4
[6a86dc24] FiniteDiff v2.1.0
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.9
[28b8d3ca] GR v0.44.0
[4d00f742] GeometryTypes v0.7.7
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.8
[033835bb] JLD2 v0.1.11
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[ad72c4b6] Kpax3 v0.5.2
[d3d80556] LineSearches v7.0.1
[856f044c] MKL_jll v2019.0.117+2
[442fdcdd] Measures v0.3.1
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v1.0.2
[4536629a] OpenBLAS_jll v0.3.7+5
[429524aa] Optim v0.20.1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[ccf2f8ad] PlotThemes v1.0.1
[995b91a9] PlotUtils v0.6.2
[91a5bcdd] Plots v0.28.4
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.3
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.0
[efce3f68] WoodburyMatrices v0.5.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Going through tests in 'data_processing/fasta_data_processing.jl'... PASSED!
Going through tests in 'data_processing/csv_data_processing.jl'... PASSED!
Going through tests in 'distances/simovici_jaroszewicz.jl'... PASSED!
Going through tests in 'distances/jaccard.jl'... PASSED!
Going through tests in 'misc/basic_functions.jl'... PASSED!
Going through tests in 'misc/partition_functions.jl'... PASSED!
Going through tests in 'types/settings.jl'... PASSED!
Going through tests in 'types/data.jl'... PASSED!
Going through tests in 'types/prior_col.jl'... PASSED!
Going through tests in 'types/prior_row.jl'... PASSED!
Going through tests in 'types/state.jl'... PASSED!
Going through tests in 'types/state_list.jl'... PASSED!
Going through tests in 'types/support.jl'... PASSED!
Going through tests in 'model/likelihoods.jl'... PASSED!
Going through tests in 'model/partition_cols.jl'... PASSED!
Going through tests in 'model/partition_rows.jl'... PASSED!
Going through tests in 'model/loss_binder.jl'... PASSED!
Going through tests in 'optimizer/local_mode.jl'... PASSED!
Going through tests in 'optimizer/selection.jl'... PASSED!
Going through tests in 'optimizer/crossover.jl'... PASSED!
Going through tests in 'optimizer/mutation.jl'... PASSED!
Going through tests in 'mcmc/partition_ratios.jl'... PASSED!
Going through tests in 'mcmc/log_likelihoods.jl'... PASSED!
Going through tests in 'mcmc/weight.jl'... PASSED!
Going through tests in 'mcmc/merge.jl'... PASSED!
Going through tests in 'mcmc/split.jl'... PASSED!
Going through tests in 'mcmc/gibbs.jl'... PASSED!
Going through tests in 'mcmc/biased_random_walk.jl'... PASSED!
Going through tests in 'mcmc/posterior.jl'... PASSED!
Going through tests in 'mcmc/diagnostics.jl'... PASSED!
Going through tests in 'estimate/write.jl'... PASSED!
Going through tests in 'plots/plots.jl'... PASSED!
Testing Kpax3 tests passed