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1.5.0-DEV-f014071421.log
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Julia Version 1.5.0-DEV.232
Commit f014071421 (2020-02-03 21:36 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed RecipesBase ───────── v0.7.0
Installed YAML ──────────────── v0.3.2
Installed CodecZlib ─────────── v0.6.0
Installed BGZFStreams ───────── v0.3.0
Installed Libz ──────────────── v1.0.1
Installed BioCore ───────────── v2.0.5
Installed BufferedStreams ───── v1.0.0
Installed GenomicFeatures ───── v1.0.4
Installed ColorTypes ────────── v0.9.1
Installed TranscodingStreams ── v0.9.5
Installed Codecs ────────────── v0.5.0
Installed BioSymbols ────────── v3.1.0
Installed IndexableBitVectors ─ v1.0.0
Installed Automa ────────────── v0.8.0
Installed IntervalTrees ─────── v1.0.0
Installed BioSequences ──────── v1.1.0
Installed Combinatorics ─────── v0.7.0
Installed Twiddle ───────────── v1.1.1
Installed BinaryProvider ────── v0.5.8
Installed DataStructures ────── v0.17.9
Installed OrderedCollections ── v1.1.0
Installed FixedPointNumbers ─── v0.7.1
Installed URIParser ─────────── v0.4.0
Installed Compat ────────────── v2.2.0
Installed Polynomials ───────── v0.6.0
Updating `~/.julia/environments/v1.5/Project.toml`
[899a7d2d] + GenomicFeatures v1.0.4
Updating `~/.julia/environments/v1.5/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.9.1
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.9
[53c48c17] + FixedPointNumbers v0.7.1
[899a7d2d] + GenomicFeatures v1.0.4
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.1
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing GenomicFeatures
#=#=# ######################################################################## 100.0%
#=#=# # 2.3%##### 7.0%######### 13.5%############### 22.1%###################### 31.4%############################# 41.1%####################################### 55.4%########################################### 60.5%########################################################## 81.4%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Status `/tmp/jl_bOTQ4j/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.9.1
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.9
[31c24e10] Distributions v0.22.4
[1a297f60] FillArrays v0.8.4
[53c48c17] FixedPointNumbers v0.7.1
[899a7d2d] GenomicFeatures v1.0.4
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[2ec943e9] Libz v1.0.1
[e1d29d7a] Missings v0.4.3
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[f27b6e38] Polynomials v0.6.0
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v0.7.0
[79098fc4] Rmath v0.6.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.3
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Test Summary: | Pass Total
Strand | 29 29
Test Summary: | Pass Total
Interval | 9 9
Test Summary: | Pass Total
IntervalCollection | 8 8
Test Summary: | Pass Total
IntervalStream | 23 23
Test Summary: | Pass Total
Indexes | 1 1
Cloning into '/home/pkgeval/.julia/packages/GenomicFeatures/VNoux/test/BioFmtSpecimens'...
Test Summary: | Pass Total
BED | 61 61
Test Summary: | Pass Total
GFF3 | 86 86
Test Summary: | Pass Total
BigWig | 78 78
Test Summary: | Pass Total
BigBed | 38 38
Testing GenomicFeatures tests passed