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1.5.0-DEV-f014071421.log
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Julia Version 1.5.0-DEV.232
Commit f014071421 (2020-02-03 21:36 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ─────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed FillArrays ────────────────── v0.8.4
Installed Roots ─────────────────────── v0.8.4
Installed TableTraits ───────────────── v1.0.0
Installed CancerSeqSim ──────────────── v0.2.0
Installed StatsFuns ─────────────────── v0.9.3
Installed QuadGK ────────────────────── v2.3.1
Installed Arpack_jll ────────────────── v3.5.0+2
Installed ProgressMeter ─────────────── v0.9.0
Installed Missings ──────────────────── v0.4.3
Installed Rmath ─────────────────────── v0.6.0
Installed Reexport ──────────────────── v0.2.0
Installed StatsModels ───────────────── v0.6.7
Installed ShiftedArrays ─────────────── v1.0.0
Installed SpecialFunctions ──────────── v0.9.0
Installed CategoricalArrays ─────────── v0.7.7
Installed DataValueInterfaces ───────── v1.0.0
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed InvertedIndices ───────────── v1.0.0
Installed Combinatorics ─────────────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed JSON ──────────────────────── v0.21.0
Installed DataFrames ────────────────── v0.20.0
Installed Distributions ─────────────── v0.21.12
Installed Arpack ────────────────────── v0.4.0
Installed DataAPI ───────────────────── v1.1.0
Installed PDMats ────────────────────── v0.9.11
Installed HypothesisTests ───────────── v0.9.0
Installed Parsers ───────────────────── v0.3.11
Installed BinaryProvider ────────────── v0.5.8
Installed OrderedCollections ────────── v1.1.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed Tables ────────────────────── v0.2.11
Installed DataStructures ────────────── v0.17.9
Installed PooledArrays ──────────────── v0.5.3
Installed Compat ────────────────────── v3.2.0
Installed GLM ───────────────────────── v1.3.6
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Polynomials ───────────────── v0.6.0
#=#=# ######################################################################## 100.0%
#=#=# 0.4% 0.5%######## 11.9%#################################### 50.4%################################################################## 92.5%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[c7b3ebfe] + CancerSeqSim v0.2.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[c7b3ebfe] + CancerSeqSim v0.2.0
[324d7699] + CategoricalArrays v0.7.7
[861a8166] + Combinatorics v1.0.0
[34da2185] + Compat v3.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.21.12
[1a297f60] + FillArrays v0.8.4
[38e38edf] + GLM v1.3.6
[09f84164] + HypothesisTests v0.9.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[69de0a69] + Parsers v0.3.11
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.3
[92933f4c] + ProgressMeter v0.9.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.0
[f2b01f46] + Roots v0.8.4
[1277b4bf] + ShiftedArrays v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Testing CancerSeqSim
Status `/tmp/jl_7AcC3B/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[b99e7846] BinaryProvider v0.5.8
[c7b3ebfe] CancerSeqSim v0.2.0
[324d7699] CategoricalArrays v0.7.7
[861a8166] Combinatorics v1.0.0
[34da2185] Compat v3.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.0
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.21.12
[1a297f60] FillArrays v0.8.4
[38e38edf] GLM v1.3.6
[09f84164] HypothesisTests v0.9.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[69de0a69] Parsers v0.3.11
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.3
[92933f4c] ProgressMeter v0.9.0
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.0
[f2b01f46] Roots v0.8.4
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.3
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running tests ...
* test_frequency.jl ...
* test_simulation.jl ...
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│ df[!, col_ind] = v
│ df
│ end` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│ df[!, col_ind] = v
│ df
│ end` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│ df[!, col_ind] = v
│ df
│ end` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│ df[!, col_ind] = v
│ df
│ end` instead.
│ caller = cumulativedist(::Simulation; fmin::Float64, fmax::Float64) at samplesim.jl:123
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:123
* test_diffmutations.jl ...
0.8387080884775339
0.8303210075927586
0.7472889068334828
0.8220177975168311
1.0941056884949023
1.2035162573443927
1.0831646316099535
1.1795662838232395
1.0616096554409156
1.1677706209850072
0.355499 seconds (204.78 k allocations: 12.629 MiB)
0.006894 seconds (16.53 k allocations: 3.654 MiB)
0.000008 seconds (3 allocations: 48 bytes)
0.717941 seconds (1.03 M allocations: 53.452 MiB)
0.000008 seconds (3 allocations: 48 bytes)
Testing CancerSeqSim tests passed