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1.5.0-DEV-71a4a114c2.log
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Julia Version 1.5.0-DEV.668
Commit 71a4a114c2 (2020-04-23 08:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed XGBoost_jll ────────────────── v0.82.0+2
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed XGBoost ────────────────────── v0.4.3
Updating `~/.julia/environments/v1.5/Project.toml`
[009559a3] + XGBoost v0.4.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[009559a3] + XGBoost v0.4.3
[a5c6f535] + XGBoost_jll v0.82.0+2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing XGBoost
Status `/tmp/jl_d8Q7Ru/Project.toml`
[009559a3] XGBoost v0.4.3
[a5c6f535] XGBoost_jll v0.82.0+2
[8f399da3] Libdl
[de0858da] Printf
[9a3f8284] Random
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_d8Q7Ru/Manifest.toml`
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[009559a3] XGBoost v0.4.3
[a5c6f535] XGBoost_jll v0.82.0+2
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[16:01:24] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[16:01:25] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[16:01:25] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
[16:01:38] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[16:01:38] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
[1] cv-test-error:0.046522+0.002437 cv-train-error:0.046522+0.001219
[2] cv-test-error:0.022263+0.000704 cv-train-error:0.022263+0.000352
[3] cv-test-error:0.010287+0.004705 cv-train-error:0.009520+0.004733
[4] cv-test-error:0.015200+0.000461 cv-train-error:0.015200+0.000231
[5] cv-test-error:0.005834+0.003135 cv-train-error:0.004760+0.003541
[16:03:12] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[16:03:13] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
training xgboost with dense matrix
[1] train-error:0.046522
[2] train-error:0.022263
training xgboost with sparse matrix
[1] train-error:0.046522
[2] train-error:0.022263
training xgboost with DMatrix[1] train-error:0.000614
[2] train-error:0.000000
[16:04:41] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[1] train-error:0.046522
[2] train-error:0.022263
test-error=0.48168839230291743
Example: Error During Test at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/runtests.jl:78
Got exception outside of a @test
LoadError: Call to XGBoost C function XGBoosterSaveModel failed: [16:04:57] /workspace/srcdir/xgboost/dmlc-core/src/io/local_filesys.cc:209: Check failed: allow_null LocalFileSystem::Open "xgb.model": Permission denied
Stack trace returned 10 entries:
[bt] (0) /home/pkgeval/.julia/artifacts/fde0d928029495312c44a7169c911ec6f731a419/lib/libxgboost.so(dmlc::StackTrace[abi:cxx11](unsigned long)+0x7c) [0x7f9b835d6fdc]
[bt] (1) /home/pkgeval/.julia/artifacts/fde0d928029495312c44a7169c911ec6f731a419/lib/libxgboost.so(dmlc::io::LocalFileSystem::Open(dmlc::io::URI const&, char const*, bool)+0x5fd) [0x7f9b837eb2dd]
[bt] (2) /home/pkgeval/.julia/artifacts/fde0d928029495312c44a7169c911ec6f731a419/lib/libxgboost.so(dmlc::Stream::Create(char const*, char const*, bool)+0x153) [0x7f9b837c1d53]
[bt] (3) /home/pkgeval/.julia/artifacts/fde0d928029495312c44a7169c911ec6f731a419/lib/libxgboost.so(XGBoosterSaveModel+0x27) [0x7f9b835d3c27]
[bt] (4) [0x7f9b9e302bb9]
[bt] (5) [0x7f9b9e302dcb]
[bt] (6) /opt/julia/bin/../lib/libjulia.so.1(jl_apply_generic+0x228) [0x7f9bb33e7578]
[bt] (7) /opt/julia/bin/../lib/libjulia.so.1(+0xce336) [0x7f9bb3400336]
[bt] (8) /opt/julia/bin/../lib/libjulia.so.1(+0xcdf80) [0x7f9bb33fff80]
[bt] (9) /opt/julia/bin/../lib/libjulia.so.1(+0xcf534) [0x7f9bb3401534]
Stacktrace:
[1] error(::String, ::String, ::String, ::String) at ./error.jl:42
[2] XGBoosterSaveModel(::Ptr{Nothing}, ::String) at /home/pkgeval/.julia/packages/XGBoost/q0cZR/src/xgboost_wrapper_h.jl:15
[3] save(::Booster, ::String) at /home/pkgeval/.julia/packages/XGBoost/q0cZR/src/xgboost_lib.jl:109
[4] top-level scope at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/example.jl:52
[5] include(::String) at ./client.jl:457
[6] top-level scope at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/runtests.jl:79
[7] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[8] top-level scope at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/runtests.jl:79
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[10] top-level scope at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/runtests.jl:10
[11] include(::String) at ./client.jl:457
[12] top-level scope at none:6
[13] eval(::Module, ::Any) at ./boot.jl:331
[14] exec_options(::Base.JLOptions) at ./client.jl:272
[15] _start() at ./client.jl:506
in expression starting at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/example.jl:52
Test Summary: | Pass Error Total
XGBoost | 10 1 11
Sparse matrices | No tests
DMatrix loading | 2 2
Agaricus training | 3 3
Cross validation | No tests
Feature importance | 1 1
Example | 1 1
Rabit | 4 4
ERROR: LoadError: Some tests did not pass: 10 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/XGBoost/q0cZR/test/runtests.jl:8
ERROR: Package XGBoost errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1516
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16