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1.5.0-DEV-71a4a114c2.log
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Julia Version 1.5.0-DEV.668
Commit 71a4a114c2 (2020-04-23 08:01 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Requires ───────────────────── v1.0.1
Installed Ogg_jll ────────────────────── v1.3.3+0
Installed TableTraits ────────────────── v1.0.0
Installed NearestNeighbors ───────────── v0.4.4
Installed PlotThemes ─────────────────── v1.0.3
Installed TerminalLoggers ────────────── v0.1.1
Installed Jags ───────────────────────── v3.0.1
Installed DataValues ─────────────────── v0.4.13
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Formatting ─────────────────── v0.4.1
Installed OpenSSL_jll ────────────────── v1.1.1+2
Installed Measures ───────────────────── v0.3.1
Installed AxisArrays ─────────────────── v0.4.3
Installed Observables ────────────────── v0.3.1
Installed Widgets ────────────────────── v0.6.2
Installed libass_jll ─────────────────── v0.14.0+1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Arpack ─────────────────────── v0.4.0
Installed DocStringExtensions ────────── v0.8.1
Installed Clustering ─────────────────── v0.14.0
Installed Distributions ──────────────── v0.23.2
Installed Documenter ─────────────────── v0.24.9
Installed DiffResults ────────────────── v1.0.2
Installed AbstractTrees ──────────────── v0.3.3
Installed AxisAlgorithms ─────────────── v1.0.0
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed DataValueInterfaces ────────── v1.0.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed FFMPEG ─────────────────────── v0.3.0
Installed ColorTypes ─────────────────── v0.10.2
Installed Bzip2_jll ──────────────────── v1.0.6+2
Installed Opus_jll ───────────────────── v1.3.1+0
Installed TableOperations ────────────── v0.2.1
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Colors ─────────────────────── v0.12.0
Installed PlotUtils ──────────────────── v0.6.5
Installed Compat ─────────────────────── v2.2.0
Installed Missings ───────────────────── v0.4.3
Installed MCMCChains ─────────────────── v3.0.12
Installed Rmath ──────────────────────── v0.6.1
Installed ArrayInterface ─────────────── v2.8.5
Installed KernelDensity ──────────────── v0.5.1
Installed ProgressMeter ──────────────── v1.2.0
Installed Showoff ────────────────────── v0.3.1
Installed WoodburyMatrices ───────────── v0.5.2
Installed IterTools ──────────────────── v1.3.0
Installed RecipesPipeline ────────────── v0.1.4
Installed libfdk_aac_jll ─────────────── v0.1.6+1
Installed Optim ──────────────────────── v0.20.1
Installed StatsFuns ──────────────────── v0.9.4
Installed LoggingExtras ──────────────── v0.4.0
Installed LibVPX_jll ─────────────────── v1.8.1+1
Installed Parameters ─────────────────── v0.12.0
Installed RangeArrays ────────────────── v0.3.2
Installed ForwardDiff ────────────────── v0.10.10
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed LAME_jll ───────────────────── v3.100.0+0
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed StatsPlots ─────────────────── v0.14.5
Installed StaticArrays ───────────────── v0.12.1
Installed JSON ───────────────────────── v0.21.0
Installed StatsBase ──────────────────── v0.32.2
Installed ProgressLogging ────────────── v0.1.2
Installed EllipsisNotation ───────────── v0.4.0
Installed OpenBLAS_jll ───────────────── v0.3.9+2
Installed MultivariateStats ──────────── v0.7.0
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed PositiveFactorizations ─────── v0.2.3
Installed RecipesBase ────────────────── v1.0.0
Installed Zlib_jll ───────────────────── v1.2.11+9
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed Distances ──────────────────── v0.8.2
Installed IntervalSets ───────────────── v0.5.0
Installed AbstractMCMC ───────────────── v1.0.1
Installed FiniteDiff ─────────────────── v2.3.0
Installed DiffRules ──────────────────── v1.0.1
Installed LineSearches ───────────────── v7.0.1
Installed GR ─────────────────────────── v0.48.0
Installed AbstractFFTs ───────────────── v0.5.0
Installed FillArrays ─────────────────── v0.8.7
Installed OrderedCollections ─────────── v1.1.0
Installed Tables ─────────────────────── v1.0.4
Installed FFMPEG_jll ─────────────────── v4.1.0+2
Installed x264_jll ───────────────────── v2019.5.25+1
Installed FixedPointNumbers ──────────── v0.8.0
Installed PDMats ─────────────────────── v0.9.12
Installed Ratios ─────────────────────── v0.4.0
Installed SpecialFunctions ───────────── v0.10.0
Installed FriBidi_jll ────────────────── v1.0.5+2
Installed x265_jll ───────────────────── v3.0.0+0
Installed MKL_jll ────────────────────── v2019.0.117+2
Installed libvorbis_jll ──────────────── v1.3.6+2
Installed DataAPI ────────────────────── v1.2.0
Installed CommonSubexpressions ───────── v0.2.0
Installed NaNMath ────────────────────── v0.3.3
Installed OffsetArrays ───────────────── v1.0.4
Installed Parsers ────────────────────── v1.0.2
Installed DataStructures ─────────────── v0.17.13
Installed QuadGK ─────────────────────── v2.3.1
Installed NLSolversBase ──────────────── v7.6.1
Installed FreeType2_jll ──────────────── v2.10.1+2
Installed Reexport ───────────────────── v0.2.0
Installed Contour ────────────────────── v0.5.2
Installed GeometryTypes ──────────────── v0.8.2
Installed FFTW ───────────────────────── v1.2.0
Installed Interpolations ─────────────── v0.12.9
Installed Plots ──────────────────────── v1.0.14
Updating `~/.julia/environments/v1.5/Project.toml`
[7de783dc] + Jags v3.0.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v1.0.1
[1520ce14] + AbstractTrees v0.3.3
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.8.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.4.3
[6e34b625] + Bzip2_jll v1.0.6+2
[aaaa29a8] + Clustering v0.14.0
[3da002f7] + ColorTypes v0.10.2
[5ae59095] + Colors v0.12.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[d38c429a] + Contour v0.5.2
[9a962f9c] + DataAPI v1.2.0
[864edb3b] + DataStructures v0.17.13
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.23.2
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.9
[da5c29d0] + EllipsisNotation v0.4.0
[c87230d0] + FFMPEG v0.3.0
[b22a6f82] + FFMPEG_jll v4.1.0+2
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+5
[1a297f60] + FillArrays v0.8.7
[6a86dc24] + FiniteDiff v2.3.0
[53c48c17] + FixedPointNumbers v0.8.0
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.10
[d7e528f0] + FreeType2_jll v2.10.1+2
[559328eb] + FriBidi_jll v1.0.5+2
[28b8d3ca] + GR v0.48.0
[4d00f742] + GeometryTypes v0.8.2
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.9
[8197267c] + IntervalSets v0.5.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[7de783dc] + Jags v3.0.1
[5ab0869b] + KernelDensity v0.5.1
[c1c5ebd0] + LAME_jll v3.100.0+0
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[dd192d2f] + LibVPX_jll v1.8.1+1
[d3d80556] + LineSearches v7.0.1
[e6f89c97] + LoggingExtras v0.4.0
[c7f686f2] + MCMCChains v3.0.12
[856f044c] + MKL_jll v2019.0.117+2
[442fdcdd] + Measures v0.3.1
[e1d29d7a] + Missings v0.4.3
[6f286f6a] + MultivariateStats v0.7.0
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.3.1
[6fe1bfb0] + OffsetArrays v1.0.4
[e7412a2a] + Ogg_jll v1.3.3+0
[4536629a] + OpenBLAS_jll v0.3.9+2
[458c3c95] + OpenSSL_jll v1.1.1+2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.20.1
[91d4177d] + Opus_jll v1.3.1+0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v1.0.2
[ccf2f8ad] + PlotThemes v1.0.3
[995b91a9] + PlotUtils v0.6.5
[91a5bcdd] + Plots v1.0.14
[85a6dd25] + PositiveFactorizations v0.2.3
[33c8b6b6] + ProgressLogging v0.1.2
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v1.0.0
[01d81517] + RecipesPipeline v0.1.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.4
[f3b207a7] + StatsPlots v0.14.5
[ab02a1b2] + TableOperations v0.2.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[5d786b92] + TerminalLoggers v0.1.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.5.2
[83775a58] + Zlib_jll v1.2.11+9
[0ac62f75] + libass_jll v0.14.0+1
[f638f0a6] + libfdk_aac_jll v0.1.6+1
[f27f6e37] + libvorbis_jll v1.3.6+2
[1270edf5] + x264_jll v2019.5.25+1
[dfaa095f] + x265_jll v3.0.0+0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building GR ───→ `~/.julia/packages/GR/yMV3y/deps/build.log`
Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Building Plots → `~/.julia/packages/Plots/8GUYs/deps/build.log`
Testing Jags
Status `/tmp/jl_dMhBn5/Project.toml`
[34da2185] Compat v2.2.0
[7de783dc] Jags v3.0.1
[f3b207a7] StatsPlots v0.14.5
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_dMhBn5/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[80f14c24] AbstractMCMC v1.0.1
[1520ce14] AbstractTrees v0.3.3
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.8.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.4.3
[6e34b625] Bzip2_jll v1.0.6+2
[aaaa29a8] Clustering v0.14.0
[3da002f7] ColorTypes v0.10.2
[5ae59095] Colors v0.12.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[d38c429a] Contour v0.5.2
[9a962f9c] DataAPI v1.2.0
[864edb3b] DataStructures v0.17.13
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.13
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.23.2
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.9
[da5c29d0] EllipsisNotation v0.4.0
[c87230d0] FFMPEG v0.3.0
[b22a6f82] FFMPEG_jll v4.1.0+2
[7a1cc6ca] FFTW v1.2.0
[f5851436] FFTW_jll v3.3.9+5
[1a297f60] FillArrays v0.8.7
[6a86dc24] FiniteDiff v2.3.0
[53c48c17] FixedPointNumbers v0.8.0
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.10
[d7e528f0] FreeType2_jll v2.10.1+2
[559328eb] FriBidi_jll v1.0.5+2
[28b8d3ca] GR v0.48.0
[4d00f742] GeometryTypes v0.8.2
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.9
[8197267c] IntervalSets v0.5.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[7de783dc] Jags v3.0.1
[5ab0869b] KernelDensity v0.5.1
[c1c5ebd0] LAME_jll v3.100.0+0
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[dd192d2f] LibVPX_jll v1.8.1+1
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.0
[c7f686f2] MCMCChains v3.0.12
[856f044c] MKL_jll v2019.0.117+2
[442fdcdd] Measures v0.3.1
[e1d29d7a] Missings v0.4.3
[6f286f6a] MultivariateStats v0.7.0
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.3.1
[6fe1bfb0] OffsetArrays v1.0.4
[e7412a2a] Ogg_jll v1.3.3+0
[4536629a] OpenBLAS_jll v0.3.9+2
[458c3c95] OpenSSL_jll v1.1.1+2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.20.1
[91d4177d] Opus_jll v1.3.1+0
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v1.0.2
[ccf2f8ad] PlotThemes v1.0.3
[995b91a9] PlotUtils v0.6.5
[91a5bcdd] Plots v1.0.14
[85a6dd25] PositiveFactorizations v0.2.3
[33c8b6b6] ProgressLogging v0.1.2
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.3.1
[b3c3ace0] RangeArrays v0.3.2
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v1.0.0
[01d81517] RecipesPipeline v0.1.4
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.4
[f3b207a7] StatsPlots v0.14.5
[ab02a1b2] TableOperations v0.2.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[5d786b92] TerminalLoggers v0.1.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.5.2
[83775a58] Zlib_jll v1.2.11+9
[0ac62f75] libass_jll v0.14.0+1
[f638f0a6] libfdk_aac_jll v0.1.6+1
[f27f6e37] libvorbis_jll v1.3.6+2
[1270edf5] x264_jll v2019.5.25+1
[dfaa095f] x265_jll v3.0.0+0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running tests for Jags-j1.4-v3.0
Environment variable JAGS_HOME not found. Use set_jags_home!.
Run execution_tests only if Jags is available
* test_cmd.jl *
tmpdir = "/home/pkgeval/.julia/packages/Jags/Xma3g/test/tmp"
File /home/pkgeval/.julia/packages/Jags/Xma3g/test/tmp/line1.bugs will be updated.
File /home/pkgeval/.julia/packages/Jags/Xma3g/test/tmp/line1-cmd1.jags will be updated.
Jagsmodel that will be used:
name = "line1"
ncommands = 1
nchains = 4
adapt = 1000
nsamples = 10000
thin = 1
jagsthin = 1
monitor = Dict{String,Bool}("sigma" => 1,"alpha" => 1,"tau" => 1,"beta" => 1)
deviance = true
dic = true
popt = true
model_file = line1.bugs
data_file = line1-data.R
tmpdir = /home/pkgeval/.julia/packages/Jags/Xma3g/test/tmp
Input observed data dictionary:
Dict{String,Any} with 3 entries:
"n" => 5
"x" => [1, 2, 3, 4, 5]
"y" => [1, 3, 3, 3, 5]
Input initial values dictionary:
4-element Array{Dict{String,Any},1}:
Dict("alpha" => 0,"tau" => 1,"beta" => 0)
Dict("alpha" => 1,"tau" => 1,"beta" => 2)
Dict("alpha" => 3,"tau" => 2,"beta" => 3)
Dict("alpha" => 5,"tau" => 5,"beta" => 2)
JAGS_HOME not found.
Skipping all tests that depend on the Jags executable!
Testing Jags tests passed