TEMP is a software package for detecting transposable elements (TEs) insertions and absences from pooled high-throughput sequencing data
Current version v1.05
Sep 24th 2016 Update: Remove the dependency on samtools view -X option. Now TEMP works for newer versions of samtools (1.x) as well.
Author: Jiali Zhuang ([email protected]) and Jie Wang ([email protected]) Weng Lab, University of Massachusetts Medical School, Worcester, MA, USA
For TE insertion analysis run TEMP_Insertion.sh in script. For TE absence analysis run TEMP_Absence.sh in script.