Docker Image

[ksarathbabu]

Thanks for this exciting tool. Read the paper and was excited to test it out. I couldn't find a mercury/indelible:latest image. So found the mercury/indelible:hg19_feb0a6f tag.

While running it, docker run -ti mercury/indelible:hg19_feb0a6f I get the following error.

Traceback (most recent call last):
File "./indelible.py", line 90, in
config_path = args.config_path
AttributeError: 'Namespace' object has no attribute 'config_path'

[greekkey]

I got the same problem. It was mentioned in the GitHub page that "Please see Docker's documentation for information on running InDelible via the Docker framework.", but I did not find any documentation in (https://hub.docker.com/r/mercury/indelible).

[eugenegardner]

Hello Both,

Sorry for the long delay, we realised that the Docker implementation needed several fixes. Please try using our new documentation and image and let me know how it works. This all comes packaged alongside our latest release:

https://github.com/HurlesGroupSanger/indelible/releases/tag/v1.1.3