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LICENSE-3RD-PARTY.txt
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GSEA Desktop Third-Party Components Acknowledgments
-------------------------------------------
GSEA is distributed, in part, under and subject to the provisions of licenses for:
Apache Batik, Copyright 1998-2014 The Apache Software Foundation. All rights reserved. (https://xmlgraphics.apache.org/batik/).
Apache Commons Compress, Copyright 2002-2014 The Apache Software Foundation. All rights reserved. (http://commons.apache.org/proper/commons-compress/).
Apache Commons IO, Copyright 2002-2012 The Apache Software Foundation. All rights reserved. (http://commons.apache.org/proper/commons-io/).
Apache Commons Lang, Copyright 2001-2015 The Apache Software Foundation. All rights reserved. (http://commons.apache.org/proper/commons-lang/).
Apache Commons Logging, Copyright 2003-2014 The Apache Software Foundation. All rights reserved. (http://commons.apache.org/proper/commons-logging/).
Apache HTTP Components, Copyright 1999-2016 The Apache Software Foundation. All rights reserved. (http://hc.apache.org/index.html).
Apple Inc. OSXAdapter, Copyright 2003-2007 Apple, Inc., All Rights Reserved.
edtFTPJ/Free, Copyright 2001-2007 Enterprise Distributed Technologies Ltd. All Rights Reserved. (enterprisedt.com).
Jakarta ECS, Copyright The Apache Software Foundation. All rights reserved. (https://attic.apache.org/projects/jakarta-ecs.html).
JCommon, Copyright 2007-2014 Object Refinery Limited. (http://www.jfree.org/jcommon/).
JFreeChart, Copyright 2005-2014 Object Refinery Limited. (http://www.jfree.org/jfreechart/).
JIDE Common, Copyright 2002-2016, JIDE Software, Inc. All Rights Reserved. (www.jidesoft.com).
JSON Simple, (https://code.google.com/archive/p/json-simple/).
Maven Artifact, Copyright 2001-2008. All rights reserved. (http://maven.apache.org/index.html).
MeV algorithms.jar, (http://www.tm4.org/mev.html).
ProGuard, Copyright 2002-2016 Eric Lafortune @ GuardSquare. (http://proguard.sourceforge.net/).
SGLayout, Copyright John Redmond ([email protected]). (http://www.javaworld.com/article/2077494/learn-java/java-tip-129--sglayout--8212-a-layout-manager-for-the-rest-of-us.html).
Trove, Copyright 2001-2005 Eric D. Friedman. All Rights Reserved. (trove.starlight-systems.com/).
Universal Java Matrix Package (UJMP), Copyright 2008-2016 Holger Arndt. All rights reserved. (https://ujmp.org/) .
----
JIDE Components, JIDE Dock, JIDE Grids: Copyright 2002-2016, JIDE Software, Inc. All Rights Reserved. (http://www.jidesoft.com/)
Note that it is necessary to provide a JIDE Software license key in order to use JIDE Components, Dock and Grids.
The key included for the GSEA source was generously provided to the GSEA development team for use with the GSEA project.
Other developers and commercial users should contact http://www.jidesoft.com to determine what type of license is needed.
----
dom4j and JGoodies are under BSD-style license, as quoted below.
----
dom4j (http://dom4j.sourceforge.net/)
Copyright 2001-2010 (C) MetaStuff, Ltd. All Rights Reserved.
Redistribution and use of this software and associated documentation
("Software"), with or without modification, are permitted provided
that the following conditions are met:
1. Redistributions of source code must retain copyright
statements and notices. Redistributions must also contain a
copy of this document.
2. Redistributions in binary form must reproduce the
above copyright notice, this list of conditions and the
following disclaimer in the documentation and/or other
materials provided with the distribution.
3. The name "DOM4J" must not be used to endorse or promote
products derived from this Software without prior written
permission of MetaStuff, Ltd. For written permission,
please contact [email protected].
4. Products derived from this Software may not be called "DOM4J"
nor may "DOM4J" appear in their names without prior written
permission of MetaStuff, Ltd. DOM4J is a registered
trademark of MetaStuff, Ltd.
5. Due credit should be given to the DOM4J Project -
http://dom4j.sourceforge.net
THIS SOFTWARE IS PROVIDED BY METASTUFF, LTD. AND CONTRIBUTORS
``AS IS'' AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT
NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL
METASTUFF, LTD. OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
----
JGoodies Looks (http://www.jgoodies.com/downloads/libraries/)
* Copyright (c) 2001-2006 JGoodies Karsten Lentzsch. All Rights Reserved.
JGoodies Forms (http://www.jgoodies.com/downloads/libraries/)
* Copyright (c) 2002-2006 JGoodies Karsten Lentzsch. All Rights Reserved.
JGoodies UIF Lite, (http://www.jgoodies.com/)
* Copyright (c) 2003 JGoodies Karsten Lentzsch. All Rights Reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* o Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* o Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* o Neither the name of JGoodies Karsten Lentzsch nor the names of
* its contributors may be used to endorse or promote products derived
* from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
* THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
* PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
* CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
* EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
* PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
* OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
* WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
* OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
* EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----
SLF4J (https://www.slf4j.org/license.html)
Copyright (c) 2004-2023 QOS.ch
All rights reserved.
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.