.gitignore

__pycache__
run_pretrain_k562_cut.sh
consensus_pwms.meme
log.txt
run_finetune.sh
*.pth
wandb
run_finetune_local_k562_zeroshot.sh
build
get_model.egg-info
data/hg38.zarr
data/loops
data/TADs
data/motif_symbol.txt
data/motif_cluster.txt
data/motif_annot.tsv
data/cell_type_pretrain.txt
data/cell_type_pretrain_human_bingren_shendure_apr2023.txt
data/cell_type_pretrain_exp.txt
data/motif_cluster_original_id.txt
test/hail*
test/data
run_pretrain_get_xf.unnorm.sh
test/*.npy
test/*results*.csv
benchmark
data/ukbb_variants.hg19.tsv.bgz
data/resources_core.tar.gz
outputs/
*.ckpt
logs
multirun
test/abc
*.txt
*pdf
*png
*bw
*tsv
experiments
tutorials/*.zarr
tutorials/*.yaml
tutorials/*.csv
tutorials/*.bed
tutorials/*.gz
tutorials/*.gz.tbi
tutorials/*.h5
tutorials/*.h5ad
get_model/_version.py
tutorials/.genomespy_shared
tutorials/*.html
tutorials/*.zarr
benchmark/test.zarr
tutorials/preprocess_recall_peak/*
tutorials/preprocess_recall_peak/*.zarr
tutorials/preprocess_recall_peak/pbmc10k_multiome.zarr