Makefile

export APP_NAME := genomic_data_service

build:
	python3 -m venv venv
	source venv/bin/activate
	pip3 install -e .
	deactivate & source venv/bin/activate
	python3 ./utils/download_files.py

run:
	FLASK_APP=$(APP_NAME) FLASK_ENV=development gunicorn --bind 0.0.0.0:5000 wsgi:app

run_docker:
	FLASK_APP=$(APP_NAME) FLASK_ENV=development GENOMIC_DATA_SERVICE_SETTINGS=../config/development_docker.cfg gunicorn --bind 0.0.0.0:5000 wsgi:app

clean:
	rm -rf genomic_data_service.egg-info/

test:
	FLASK_APP=$(APP_NAME) FLASK_ENV=test GENOMIC_DATA_SERVICE_SETTINGS=../config/test.cfg pytest -s -v --cov=genomic_data_service

unit_test:
	FLASK_APP=$(APP_NAME) FLASK_ENV=test GENOMIC_DATA_SERVICE_SETTINGS=../config/test.cfg pytest -s -v --cov=genomic_data_service -m 'not integration'

integration_test:
	FLASK_APP=$(APP_NAME) FLASK_ENV=test GENOMIC_DATA_SERVICE_SETTINGS=../config/test.cfg pytest -s -v --cov=genomic_data_service --cov-append -m 'integration'

prod:
	FLASK_APP=$(APP_NAME) GENOMIC_DATA_SERVICE_SETTINGS=../config/production.cfg gunicorn -w 4 -b 127.0.0.1:4000 wsgi:app

worker:
	celery -A genomic_data_service.region_indexer_task.celery_app worker --loglevel=INFO

worker_docker:
	GENOMIC_DATA_SERVICE_SETTINGS=../config/development_docker.cfg celery -A genomic_data_service.region_indexer_task.celery_app worker --loglevel=INFO

flower:
	flower -A genomic_data_service.region_indexer_task.celery_app --address=127.0.0.1 --port=5555 --persistent=True --db=indexer_logs --max_tasks=1000000

index:
	python3 genomic_data_service/region_indexer.py

index_local:
	python3 genomic_data_service/region_indexer.py --local

index_docker:
	sleep 10
	GENOMIC_DATA_SERVICE_SETTINGS=../config/development_docker.cfg python3 genomic_data_service/region_indexer.py --local --uri elasticsearch --port 9200