From 8b829bb4197943020293c22dd113630ca01b564f Mon Sep 17 00:00:00 2001 From: lschriml Date: Wed, 23 Oct 2024 17:26:28 -0400 Subject: [PATCH] fixing URLs --- src/ontology/doid-edit.owl | 49 +++++++++++++++++++------------------- 1 file changed, 25 insertions(+), 24 deletions(-) diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl index db714b93..fe120063 100644 --- a/src/ontology/doid-edit.owl +++ b/src/ontology/doid-edit.owl @@ -16690,7 +16690,7 @@ SubClassOf(obo:DOID_0050116 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_6 # Class: obo:DOID_0050117 (disease by infectious agent) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C26726") obo:IAO_0000115 obo:DOID_0050117 "A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C26726") obo:IAO_0000115 obo:DOID_0050117 "A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions."@en) AnnotationAssertion(obo:OBI_9991118 obo:DOID_0050117 "infectious disease") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:10115") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:11078") @@ -16823,7 +16823,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_0050126 "true"^^xsd:boolean) # Class: obo:DOID_0050127 (sinusitis) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/sinusitis") Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C35024&ns=NCI_Thesaurus&key=1218436475&b=1&n=null") obo:IAO_0000115 obo:DOID_0050127 "A paranasal sinus disease involving inflammation of the paranasal sinuses resulting from bacterial, fungal, viral infection, allergic or autoimmune issues. Symptoms can include fever, weakness, fatigue, cough and congestion. There may also be mucus drainage in the back of the throat, called postnasal drip."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/sinusitis") obo:IAO_0000115 obo:DOID_0050127 "A paranasal sinus disease involving inflammation of the paranasal sinuses resulting from bacterial, fungal, viral infection, allergic or autoimmune issues. Symptoms can include fever, weakness, fatigue, cough and congestion. There may also be mucus drainage in the back of the throat, called postnasal drip."@en) AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050127 "DOID:2052") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050127 "DOID:9564") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050127 "ICD10CM:J01") @@ -16978,7 +16978,7 @@ SubClassOf(obo:DOID_0050143 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_1 # Class: obo:DOID_0050144 (Kartagener syndrome) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Situs_inversus#Kartagener_syndrome") Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C84797") Annotation(oboInOwl:hasDbXref "url:http://rarediseases.info.nih.gov/gard/6815/kartagener-syndrome/resources/1") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/19529061") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/23243352") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/24019633") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25633235") obo:IAO_0000115 obo:DOID_0050144 "A primary ciliary dyskinesia that is characterized by sinusitis, bronchiectasis and situs inversus with dextrocardia resulting from dysfunction of the cilia during embryologic development."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Situs_inversus#Kartagener_syndrome") Annotation(oboInOwl:hasDbXref "url:http://rarediseases.info.nih.gov/gard/6815/kartagener-syndrome/resources/1") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/19529061") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/23243352") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/24019633") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25633235") obo:IAO_0000115 obo:DOID_0050144 "A primary ciliary dyskinesia that is characterized by sinusitis, bronchiectasis and situs inversus with dextrocardia resulting from dysfunction of the cilia during embryologic development."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050144 "GARD:6815") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050144 "MESH:D007619") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050144 "NCI:C84797") @@ -17162,7 +17162,7 @@ SubClassOf(obo:DOID_0050157 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000614 # Class: obo:DOID_0050158 (desquamative interstitial pneumonia) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C35288") Annotation(oboInOwl:hasDbXref "url:http://www.merck.com/mmhe/sec04/ch050/ch050b.html?qt=idiopathic%20interstitial%20pneumonia&alt=sh") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/11790668") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/16142185") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/16456642") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/23001799") obo:IAO_0000115 obo:DOID_0050158 "An idiopathic interstitial pneumonia that is characterized by the accumulation of bronchiolocentric alveolar macrophages in alveolar spaces and interstitial inflammation and involves mild bronchiolar fibrosis and chronic inflammation."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:http://www.merck.com/mmhe/sec04/ch050/ch050b.html?qt=idiopathic%20interstitial%20pneumonia&alt=sh") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/11790668") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/16142185") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/16456642") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/23001799") obo:IAO_0000115 obo:DOID_0050158 "An idiopathic interstitial pneumonia that is characterized by the accumulation of bronchiolocentric alveolar macrophages in alveolar spaces and interstitial inflammation and involves mild bronchiolar fibrosis and chronic inflammation."@en) AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050158 "DOID:2796") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050158 "ICD10CM:J84.117") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050158 "ICD9CM:516.37") @@ -21347,7 +21347,7 @@ SubClassOf(obo:DOID_0050522 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0019161 # Class: obo:DOID_0050523 (adult T-cell leukemia/lymphoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Adult_T-cell_leukemia/lymphoma") Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C3184") obo:IAO_0000115 obo:DOID_0050523 "A T-cell acute leukemia that results_in abnormal increase of lymphocytes, derives_from T-cells, has_material_basis_in Human T-lymphotropic virus 1 (HTLV-1), which is transmitted_by sexual contact, transmitted_by contaminated needles used by intravenous-drug users, and transmitted_by breast feeding. The infection results_in_formation_of skin lesions."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Adult_T-cell_leukemia/lymphoma") obo:IAO_0000115 obo:DOID_0050523 "A T-cell acute leukemia that results_in abnormal increase of lymphocytes, derives_from T-cells, has_material_basis_in Human T-lymphotropic virus 1 (HTLV-1), which is transmitted_by sexual contact, transmitted_by contaminated needles used by intravenous-drug users, and transmitted_by breast feeding. The infection results_in_formation_of skin lesions."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050523 "GARD:13103") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050523 "ICD10CM:C91.5") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050523 "ICDO:9827/3") @@ -28935,9 +28935,10 @@ SubClassOf(obo:DOID_0060084 obo:DOID_0060072) # Class: obo:DOID_0060085 (organ system benign neoplasm) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.07d&code=C367") obo:IAO_0000115 obo:DOID_0060085 "A benign neoplasm that is classified by the organ system from which it is arising from."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C3677") obo:IAO_0000115 obo:DOID_0060085 "A benign neoplasm that is classified by the organ system from which it is arising from."@en) AnnotationAssertion(oboInOwl:created_by obo:DOID_0060085 "lschriml") AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060085 "2011-07-14T12:12:23Z") +AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060085 "NCI:C3677") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060085 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0060085 "DOID:0060085") AnnotationAssertion(oboInOwl:inSubset obo:DOID_0060085 doid:DO_FlyBase_slim) @@ -30877,7 +30878,7 @@ SubClassOf(obo:DOID_0060227 obo:DOID_225) # Class: obo:DOID_0060228 (intracranial berry aneurysm) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Intracranial_aneurysm#Saccular_aneurysms") Annotation(oboInOwl:hasDbXref "url:http://radiopaedia.org/articles/saccular-cerebral-aneurysm") obo:IAO_0000115 obo:DOID_0060228 "An intracranial aneurysm with a characteristic rounded shape; the most common form of cerebral aneurysm."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Intracranial_aneurysm#Saccular_aneurysms") Annotation(oboInOwl:hasDbXref "url:https://radiopaedia.org/articles/saccular-cerebral-aneurysm") obo:IAO_0000115 obo:DOID_0060228 "An intracranial aneurysm with a characteristic rounded shape; the most common form of cerebral aneurysm."@en) AnnotationAssertion(oboInOwl:created_by obo:DOID_0060228 "emitraka") AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060228 "2015-01-16T16:24:39Z") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060228 "MIM:PS105800") @@ -31580,7 +31581,7 @@ SubClassOf(obo:DOID_0060261 ObjectSomeValuesFrom(obo:RO_0004019 obo:HP_0001197)) # Class: obo:DOID_0060262 (gallbladder disease) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Gallbladder_disease") Annotation(oboInOwl:hasDbXref "url:http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C34631&ns=NCI_Thesaurus&key=n1027527578&b=1&n=null") obo:IAO_0000115 obo:DOID_0060262 "A gastrointestinal system disease that is located_in the gallbladder."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Gallbladder_disease") obo:IAO_0000115 obo:DOID_0060262 "A gastrointestinal system disease that is located_in the gallbladder."@en) AnnotationAssertion(oboInOwl:created_by obo:DOID_0060262 "emitraka") AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060262 "2015-02-02T15:48:08Z") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0060262 "DOID:0000000") @@ -51919,7 +51920,7 @@ SubClassOf(obo:DOID_0080146 ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0011463)) # Class: obo:DOID_0080147 (lymphoblastic lymphoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C7055") obo:IAO_0000115 obo:DOID_0080147 "A lymphoma that has_material_basis_in immature malignant lymphocytes (lymphoblasts) committed to the B-cell or T-cell lineage and located_in primarily lymph nodes or located_in extranodal sites."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C7055") obo:IAO_0000115 obo:DOID_0080147 "A lymphoma that has_material_basis_in immature malignant lymphocytes (lymphoblasts) committed to the B-cell or T-cell lineage and located_in primarily lymph nodes or located_in extranodal sites."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080147 "GARD:3329") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080147 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0080147 "DOID:0080147") @@ -51929,7 +51930,7 @@ SubClassOf(obo:DOID_0080147 obo:DOID_0060058) # Class: obo:DOID_0080148 (T-cell childhood lymphoblastic lymphoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf") obo:IAO_0000115 obo:DOID_0080148 "A lymphoblastic lymphoma that has_material_basis_in T-cells and that occurs during childhood."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://www.dana-farber.org/cancer-care/types/childhood-lymphoblastic-lymphoma") obo:IAO_0000115 obo:DOID_0080148 "A lymphoblastic lymphoma that has_material_basis_in T-cells and that occurs during childhood."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080148 "NCI:C7210") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0080148 "Childhood T lymphoblastic lymphoma"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080148 "disease_ontology") @@ -51944,7 +51945,7 @@ SubClassOf(obo:DOID_0080148 ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0011463)) # Class: obo:DOID_0080149 (adult acute monocytic leukemia) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf") obo:IAO_0000115 obo:DOID_0080149 "An acute monocytic leukemia occurring in adults."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Acute_monocytic_leukemia") obo:IAO_0000115 obo:DOID_0080149 "An acute monocytic leukemia occurring in adults."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080149 "NCI:C8263") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080149 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0080149 "DOID:0080149") @@ -56081,7 +56082,7 @@ SubClassOf(obo:DOID_0080523 ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0003581)) # Class: obo:DOID_0080524 (thyroid gland adenocarcinoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf") obo:IAO_0000115 obo:DOID_0080524 "A thyroid gland carcinoma that derives_from epithelial cells of glandular origin."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C27380") obo:IAO_0000115 obo:DOID_0080524 "A thyroid gland carcinoma that derives_from epithelial cells of glandular origin."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0080524 "NCI:C27380") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080524 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0080524 "DOID:0080524") @@ -129093,7 +129094,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_13696 "true"^^xsd:boolean) # Class: obo:DOID_137 (vaginal squamous papilloma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C6374") obo:IAO_0000115 obo:DOID_137 "A vaginal benign neoplasm that is characterized by the presence of a fibrovascular stalk lined by normal squamous epithelium."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C6374") obo:IAO_0000115 obo:DOID_137 "A vaginal benign neoplasm that is characterized by the presence of a fibrovascular stalk lined by normal squamous epithelium."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_137 "NCI:C6374") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_137 "UMLS_CUI:C1336943") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_137 "squamous papilloma of vagina"@en) @@ -140240,7 +140241,7 @@ SubClassOf(obo:DOID_1923 obo:DOID_2277) # Class: obo:DOID_1924 (hypogonadism) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Hypogonadism") obo:IAO_0000115 obo:DOID_1924 "A gonadal disease that is characterized by diminished functional activity of the gonads."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Hypogonadism") obo:IAO_0000115 obo:DOID_1924 "A gonadal disease that is characterized by diminished functional activity of the gonads."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "MESH:D007006") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "MIM:241100") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "NCI:C9227") @@ -143613,7 +143614,7 @@ SubClassOf(obo:DOID_2280 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0020026)) # Class: obo:DOID_2282 (hidradenitis) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf?dictionary=NCI_Thesaurus&version=18.09d&code=C112190&ns=ncit&type=properties&key=null&b=1&n=0&vse=null") obo:IAO_0000115 obo:DOID_2282 "A sweat gland disease that is characterized by inflammation of the apocrine sweat glands and has_symptom erythema, edema, papules, plaques, pruritis, and pain."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C112190") obo:IAO_0000115 obo:DOID_2282 "A sweat gland disease that is characterized by inflammation of the apocrine sweat glands and has_symptom erythema, edema, papules, plaques, pruritis, and pain."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2282 "ICD9CM:705.83") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2282 "MESH:D016575") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2282 "NCI:C112190") @@ -144006,7 +144007,7 @@ SubClassOf(obo:DOID_2338 obo:DOID_1862) # Class: obo:DOID_2339 (Crouzon syndrome) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Crouzon_syndrome") Annotation(oboInOwl:hasDbXref "url:http://ghr.nlm.nih.gov/condition/crouzon-syndrome") Annotation(oboInOwl:hasDbXref "url:http://rarediseases.about.com/cs/crouzonsyndrome/a/011804.htm") Annotation(oboInOwl:hasDbXref "url:https://www.faces-cranio.org/crouzon") obo:IAO_0000115 obo:DOID_2339 "A craniosynostosis that involves premature fusion of certain skull bones. This early fusion prevents the skull from growing normally and affects the shape of the head and face. The disease is associated with mutations in the FGFR2 gene."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Crouzon_syndrome") Annotation(oboInOwl:hasDbXref "url:http://ghr.nlm.nih.gov/condition/crouzon-syndrome") Annotation(oboInOwl:hasDbXref "url:https://www.faces-cranio.org/crouzon") obo:IAO_0000115 obo:DOID_2339 "A craniosynostosis that involves premature fusion of certain skull bones. This early fusion prevents the skull from growing normally and affects the shape of the head and face. The disease is associated with mutations in the FGFR2 gene."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2339 "GARD:6206") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2339 "ICD10CM:Q75.1") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2339 "MESH:D003394") @@ -145022,7 +145023,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_2446 "true"^^xsd:boolean) # Class: obo:DOID_2449 (acromegaly) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007640) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Acromegaly") Annotation(oboInOwl:hasDbXref "url:http://www.acromegaly.org/") Annotation(oboInOwl:hasDbXref "url:http://www.mayoclinic.com/health/acromegaly/DS00478") Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/ency/article/000321.htm") obo:IAO_0000115 obo:DOID_2449 "A disease of metabolism that has_material_basis_in excessive growth hormone production which results_in enlargement located_in limb."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007640) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Acromegaly") Annotation(oboInOwl:hasDbXref "url:http://www.mayoclinic.com/health/acromegaly/DS00478") Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/medlineplus/ency/article/000321.htm") obo:IAO_0000115 obo:DOID_2449 "A disease of metabolism that has_material_basis_in excessive growth hormone production which results_in enlargement located_in limb."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2449 "GARD:5725") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2449 "MESH:D000172") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2449 "NCI:C84533") @@ -145086,7 +145087,7 @@ SubClassOf(obo:DOID_2452 obo:DOID_1247) # Class: obo:DOID_2455 (angular blepharoconjunctivitis) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:http://dro.hs.columbia.edu/angbleph.htm") obo:IAO_0000115 obo:DOID_2455 "A blepharoconjunctivitis that is characterized by fissuring, scaling, maceration and erythema of the lateral or medial canthal area."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/books/NBK558902/") obo:IAO_0000115 obo:DOID_2455 "A blepharoconjunctivitis that is characterized by fissuring, scaling, maceration and erythema of the lateral or medial canthal area."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2455 "ICD10CM:H10.52") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2455 "ICD9CM:372.21") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2455 "SNOMEDCT_US_2023_03_01:193871000") @@ -158050,7 +158051,7 @@ SubClassOf(obo:DOID_3698 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionO # Class: obo:DOID_3699 (uterine ligament mucinous adenocarcinoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf") obo:IAO_0000115 obo:DOID_3699 "A uterine ligament adenocarcinoma that produces mucin."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C40137") obo:IAO_0000115 obo:DOID_3699 "A uterine ligament adenocarcinoma that produces mucin."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3699 "NCI:C40137") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3699 "UMLS_CUI:C5557429") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_3699 "disease_ontology") @@ -168042,7 +168043,7 @@ SubClassOf(obo:DOID_4756 obo:DOID_4757) # Class: obo:DOID_4757 (testicular sex cord-stromal neoplasm) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf?dictionary=NCI_Thesaurus&version=18.10e&code=C6358&ns=ncit&type=relationship&key=null&b=1&n=0&vse=null") obo:IAO_0000115 obo:DOID_4757 "A sex cord-gonadal stromal tumor that is located_in the testis."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C39948") obo:IAO_0000115 obo:DOID_4757 "A sex cord-gonadal stromal tumor that is located_in the testis."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4757 "NCI:C39948") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4757 "UMLS_CUI:C1515289") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_4757 "Sex Cord-Stromal tumor of testis"@en) @@ -170766,7 +170767,7 @@ AnnotationAssertion(owl:deprecated obo:DOID_5002 "true"^^xsd:boolean) # Class: obo:DOID_5003 (eunuchism) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?exact&field=uid&term=D005058") obo:IAO_0000115 obo:DOID_5003 "A hypogonadism that is characterized by the lack of mature male germ cells and testicular hormones."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(dc:type obo:ECO_0007643) Annotation(oboInOwl:hasDbXref "url:https://www.merriam-webster.com/dictionary/eunuch") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/mesh/?term=D005058") obo:IAO_0000115 obo:DOID_5003 "A hypogonadism that is characterized by the lack of mature male germ cells and testicular hormones."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5003 "MESH:D005058") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5003 "SNOMEDCT_US_2023_03_01:190559001") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5003 "UMLS_CUI:C0238117") @@ -180235,7 +180236,7 @@ SubClassOf(obo:DOID_6001 obo:DOID_3017) # Class: obo:DOID_6003 (aleukemic leukemia cutis) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf?dictionary=NCI_Thesaurus&version=20.02d&code=C4983&ns=ncit&type=properties&key=null&b=1&n=0&vse=null") obo:IAO_0000115 obo:DOID_6003 "An aleukemic leukemia that is characterized by the infiltration of the skin and subcutaneous tissue by leukemic cells without evidence of leukemia in the bone marrow and peripheral blood."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C4983") obo:IAO_0000115 obo:DOID_6003 "An aleukemic leukemia that is characterized by the infiltration of the skin and subcutaneous tissue by leukemic cells without evidence of leukemia in the bone marrow and peripheral blood."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_6003 "NCI:C4983") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_6003 "UMLS_CUI:C0887846") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_6003 "disease_ontology") @@ -185495,7 +185496,7 @@ SubClassOf(obo:DOID_6758 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0016435) # Class: obo:DOID_6759 (bone lymphoma) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://lymphoma.about.com/od/nonhodgkinlymphoma/qt/bonelymphoma.htm") Annotation(oboInOwl:hasDbXref "url:https://orthoinfo.aaos.org/en/diseases--conditions/primary-lymphoma-of-bone") obo:IAO_0000115 obo:DOID_6759 "A bone cancer and lymphoma by site that results_in lymphoma starting in the bone."@en) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://lymphoma.about.com/od/nonhodgkinlymphoma/qt/bonelymphoma.htm") obo:IAO_0000115 obo:DOID_6759 "A bone cancer and lymphoma by site that results_in lymphoma starting in the bone."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_6759 "NCI:C6620") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_6759 "SNOMEDCT_US_2023_03_01:766935007") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_6759 "UMLS_CUI:C1332582") @@ -202529,7 +202530,7 @@ SubClassOf(obo:DOID_9125 obo:DOID_8602) # Class: obo:DOID_913 (atrophic muscular disease) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C84574") obo:IAO_0000115 obo:DOID_913 "A neuromuscular disease that is characterized by an abnormal reduction in the muscle volume and atrophy."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007636) Annotation(oboInOwl:hasDbXref "url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C84574") obo:IAO_0000115 obo:DOID_913 "A neuromuscular disease that is characterized by an abnormal reduction in the muscle volume and atrophy."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_913 "MESH:D020966") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_913 "NCI:C84574") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_913 "UMLS_CUI:C0752352")