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Can only map two cell types when plotting DE genes #35

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whitneyt1 opened this issue Mar 8, 2022 · 0 comments
Open

Can only map two cell types when plotting DE genes #35

whitneyt1 opened this issue Mar 8, 2022 · 0 comments

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@whitneyt1
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Hello!

When plotting the DE genes found with DEG() for multiple subtypes, I receive the following error
`>res_cat<-FindLR(deg_tumor, data_2=c(deg_fibro,deg_tcells), datatype='DEG',comm_type=comm_type)

Error in gene_list_2[, c("gene", "logFC", "q.value", "cell_type")] :
incorrect number of dimensions`

Is it only possible to plot two cell subtypes at a time? The paper example has multiple subtypes.

Thanks!
Screen Shot 2022-03-07 at 5 14 01 PM

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