diff --git a/release/common/README.txt b/release/common/README.txt index 2d78f4c3..3505ad2e 100644 --- a/release/common/README.txt +++ b/release/common/README.txt @@ -1,4 +1,4 @@ - BEAST v2.7.1 2022 + BEAST v2.7.3 2022 Beast 2 development team 2011-2022 Last updated: October 2022 diff --git a/release/common/VERSION HISTORY.txt b/release/common/VERSION HISTORY.txt index db6b5e43..f575ab21 100644 --- a/release/common/VERSION HISTORY.txt +++ b/release/common/VERSION HISTORY.txt @@ -1,10 +1,21 @@ - BEAST v2.7.1 2022 + BEAST v2.7.3 2022 Beast 2 development team 2011-2022 Version History -Last updated: October 2022 +Last updated: December 2022 All issues can be viewed at https://github.com/CompEvol/beast2/issues ================================================================================ +Version 2.7.3 + Allow all packages to be installed, not just a small subset + Add suppor for various packages + Add -packagedir and -version_file CLI options to BEAST, BEAUti + Extend XML variable substitution to text nodes + BEAUti: fix bugs in templates + BEAUti more robust when reloading XML into BEAUti + +Version 2.7.2 + Add suppor for various packages + Version 2.7.1 Fix assorted launch issues on Windows, Mac and Linux DocMaker functional again diff --git a/scripts/migrate.pl b/scripts/migrate.pl index 82db560d..be3b0910 100644 --- a/scripts/migrate.pl +++ b/scripts/migrate.pl @@ -384,6 +384,28 @@ "BMTExchangeOperator" "bmodeltest.evolution.operators.BMTExchangeOperator" "BMTScaleOperator" "bmodeltest.evolution.operators.BMTScaleOperator" "BMTBirthDeathOperator" "bmodeltest.evolution.operators.BMTBirthDeathOperator" +"tree.MultiRateTreeFromNewick" "msbd.base.evolution.tree.MultiRateTreeFromNewick" +"ExtendableRealParameter" "msbd.base.inference.parameter.ExtendableRealParameter" +"StdBirthDeathDensity" "msbd.distributions.StdBirthDeathDensity" +"StateChangeModel" "msbd.evolution.tree.StateChangeModel" +"PointDistribution" "msbd.distributions.PointDistribution" +"MRTSubtreeExchange" "msbd.evolution.operator.MRTSubtreeExchange" +"MRTWilsonBalding" "msbd.evolution.operator.MRTWilsonBalding" +"MultiRateTreeUniform" "msbd.evolution.operator.MultiRateTreeUniform" +"NodeShiftRetype" "msbd.evolution.operator.NodeShiftRetype" +"NodeRetype" "msbd.evolution.operator.NodeRetype" +"AddRemoveColourWPropagation" "msbd.evolution.operator.AddRemoveColourWPropagation" +"AddRemoveConnectedWPropagation" "msbd.evolution.operator.AddRemoveConnectedWPropagation" +"MoveColourChange" "msbd.evolution.operator.MoveColourChange" +"parameter.ExtendableRealParameter" "msbd.base.inference.parameter.ExtendableRealParameter" +"MultiRateTreeFromNewick" "msbd.base.evolution.tree.MultiRateTreeFromNewick" +beast.base.evolution.tree.MultiRateTreeFromNewick msbd.base.evolution.tree.MultiRateTreeFromNewick +beast.base.evolution.tree.MultiRateTree msbd.base.evolution.tree.MultiRateTree +beast.math.distributions.FossilCalibration cladeage.math.distributions.FossilCalibration +beast.math.distributions.FossilPrior cladeage.math.distributions.FossilPrior +beast.math.distributions.DuoFossilPrior cladeage.math.distributions.DuoFossilPrior +beast.math.distributions.DuoFossilCalibration cladeage.math.distributions.DuoFossilCalibration +beast.math.distributions.CompoundFossilPrior cladeage.math.distributions.CompoundFossilPrior ' ;