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Second aligner to reduce artifacts risen from mapping algorithms #89

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hassanfa opened this issue Oct 1, 2018 · 2 comments
Closed
8 tasks

Second aligner to reduce artifacts risen from mapping algorithms #89

hassanfa opened this issue Oct 1, 2018 · 2 comments
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hassanfa commented Oct 1, 2018 •
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Add bowtie2 as a second aligner:

  • Update wiki
  • bowtie2 rule
  • aligner wildcard
  • align+QC workflow

Add minimap2 as a second aligner:

  • Update wiki
  • minimap2 rule
  • aligner wildcard
  • align+QC workflow
@hassanfa hassanfa self-assigned this Oct 1, 2018
@hassanfa hassanfa changed the title Dual aligner Second aligner Oct 1, 2018
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hassanfa commented Sep 9, 2020

Second aligner to reduce false positive rate. Another topic to talk about. I've already tried bowtie2, but I wasn't happy with the result.

Add bbmap to the above list, and lets define a project for it and time box it properly. This can be quite useful in certain context.

@hassanfa hassanfa mentioned this issue Sep 9, 2020
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@hassanfa hassanfa changed the title Second aligner Second aligner to reduce artifacts risen from mapping algorithms Mar 8, 2021
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More of a research investigation. No production value yet. Closing it.

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