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Failed VarDict och Mutect2 on Java memory #427

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keyvanelhami opened this issue Sep 25, 2020 · 2 comments
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Failed VarDict och Mutect2 on Java memory #427

keyvanelhami opened this issue Sep 25, 2020 · 2 comments

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@keyvanelhami
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Case or sample information
Internal sample id or case id: wittyworm and soundmoth
Amount read-pairs: 83 (wittyworm), 81 (soundmoth)
Sequence type (WES, TGA, WGS): TGA

Error message
java.lang.InternalError: a fault occurred in a recent unsafe memory access operation in compiled Java code

Link to the error message
wittyworm/logs/BALSAMIC.wittyworm.vardict_tumor_only.94.sh_621551.err
@keyvanelhami keyvanelhami added the Bug Something isn't working label Sep 25, 2020
@keyvanelhami keyvanelhami changed the title [ Failed Analysis ] Failed VarDict och Mutect2 on Java memory Sep 25, 2020
@hassanfa
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Solution: Increase memory for vardict-java from 8G to 32G.

@hassanfa hassanfa added Failed Analysis and removed Bug Something isn't working labels Sep 25, 2020
@hassanfa hassanfa mentioned this issue Sep 28, 2020
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This was referenced Oct 11, 2020
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@hassanfa
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Fixed in #440

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@hassanfa @keyvanelhami