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Is your feature request related to a problem? Please describe.
Occasionally some variant callers fail due to timeouts, bug, or stall for hard to call regions. There should be an option to enable or disable them.
Describe the solution you'd like
Disable or enable variant callers through CLI
Describe alternatives you've considered
Modular workflows, but it won't make it possible to disable/enable at will.
Additional context
Mutect2 is notorious for timeout and long computation time. It is useful to disable it occasionally.
Expected output for the feature balsamic run analysis .... --disable-var-caller mutect2
Current BALSAMIC version 5.1.0
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Occasionally some variant callers fail due to timeouts, bug, or stall for hard to call regions. There should be an option to enable or disable them.
Describe the solution you'd like
Disable or enable variant callers through CLI
Describe alternatives you've considered
Modular workflows, but it won't make it possible to disable/enable at will.
Additional context
Mutect2 is notorious for timeout and long computation time. It is useful to disable it occasionally.
Expected output for the feature
balsamic run analysis .... --disable-var-caller mutect2
Current BALSAMIC version
5.1.0
The text was updated successfully, but these errors were encountered: