diff --git a/clm-base.json b/clm-base.json index 4182a8c..ea8142a 100644 --- a/clm-base.json +++ b/clm-base.json @@ -16,9 +16,9 @@ "val" : "Cell Markers Ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2024-11-28" + "val" : "2024-11-29" } ], - "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-base.json" + "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-base.json" }, "nodes" : [ { "id" : "http://identifiers.org/ensembl/ENSG00000006128", @@ -732,7 +732,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_0002075", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -762,7 +762,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_0002480", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -782,7 +782,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_0017000", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -812,7 +812,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_1000312", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -822,7 +822,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023011", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -832,7 +832,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023015", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -842,7 +842,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023016", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -852,7 +852,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023017", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -862,7 +862,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023018", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -872,7 +872,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023036", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -882,7 +882,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023041", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -892,7 +892,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023042", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -902,7 +902,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023046", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -912,7 +912,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4023121", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -942,7 +942,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030059", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -952,7 +952,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030063", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -962,7 +962,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030064", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -972,7 +972,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030065", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -982,7 +982,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030067", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -992,7 +992,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4030068", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1022,7 +1022,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4033023", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1052,7 +1052,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4033043", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1062,7 +1062,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4033048", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1072,7 +1072,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4033077", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1082,7 +1082,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4033080", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -1092,7 +1092,7 @@ "id" : "http://purl.obolibrary.org/obo/CL_4042013", "type" : "CLASS", "meta" : { - "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" diff --git a/clm-base.obo b/clm-base.obo index 32717dc..cd90a5c 100644 --- a/clm-base.obo +++ b/clm-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: clm/releases/2024-11-28/clm-base.owl +data-version: clm/releases/2024-11-29/clm-base.owl idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# @@ -8,7 +8,7 @@ property_value: dce:type IAO:8000001 property_value: dcterms:description "None" xsd:string property_value: dcterms:license https://creativecommons.org/licenses/unspecified property_value: dcterms:title "Cell Markers Ontology" xsd:string -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string [Term] id: CL:0000583 @@ -30,7 +30,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002075 -comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000061 ! has characterizing marker set NS forest marker set of brush cell of tracheobronchial tree (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -48,7 +48,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002480 -comment: The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000027 ! has characterizing marker set NS forest marker set of nasal mucosa goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -60,7 +60,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0017000 -comment: The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000032 ! has characterizing marker set NS forest marker set of pulmonary ionocyte (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -78,69 +78,69 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000312 -comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} -comment: The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000026 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). relationship: RO:0015004 CLM:1000028 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023011 -comment: The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000074 ! has characterizing marker set NS forest marker set of lamp5 GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023015 -comment: The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000081 ! has characterizing marker set NS forest marker set of sncg GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023016 -comment: The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000085 ! has characterizing marker set NS forest marker set of VIP GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023017 -comment: The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000082 ! has characterizing marker set NS forest marker set of sst GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023018 -comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000080 ! has characterizing marker set NS forest marker set of pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023036 -comment: The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000063 ! has characterizing marker set NS forest marker set of chandelier pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023041 -comment: The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000067 ! has characterizing marker set NS forest marker set of L5 extratelencephalic projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023042 -comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000070 ! has characterizing marker set NS forest marker set of L6 corticothalamic-projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023046 -comment: The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000073 ! has characterizing marker set NS forest marker set of L6b glutamatergic neuron of the primary motor cortex (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023121 -comment: The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000083 ! has characterizing marker set NS forest marker set of sst chodl GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -158,37 +158,37 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030059 -comment: The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000065 ! has characterizing marker set NS forest marker set of L2/3 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030063 -comment: The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000066 ! has characterizing marker set NS forest marker set of L4 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030064 -comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000068 ! has characterizing marker set NS forest marker set of L5 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030065 -comment: The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000071 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030067 -comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000069 ! has characterizing marker set NS forest marker set of L5/6 near-projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030068 -comment: The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000072 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting Car3 glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -206,7 +206,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033023 -comment: The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000052 ! has characterizing marker set NS forest marker set of airway submucosal gland collecting duct epithelial cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -224,31 +224,31 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033043 -comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000031 ! has characterizing marker set NS forest marker set of lung interstitial macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033048 -comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000059 ! has characterizing marker set NS forest marker set of respiratory suprabasal cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033077 -comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000006 ! has characterizing marker set NS forest marker set of cycling alveolar macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033080 -comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000010 ! has characterizing marker set NS forest marker set of cycling pulmonary alveolar type 2 cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4042013 -comment: The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000075 ! has characterizing marker set NS forest marker set of Lamp5 Lhx6 neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 diff --git a/clm-base.owl b/clm-base.owl index b61a9af..3e62d26 100644 --- a/clm-base.owl +++ b/clm-base.owl @@ -11,12 +11,12 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 @@ -1709,12 +1709,12 @@ - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1772,12 +1772,12 @@ - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1814,12 +1814,12 @@ - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1883,19 +1883,19 @@ - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1911,12 +1911,12 @@ - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1932,12 +1932,12 @@ - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1953,12 +1953,12 @@ - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1974,12 +1974,12 @@ - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -1995,12 +1995,12 @@ - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2016,12 +2016,12 @@ - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2037,12 +2037,12 @@ - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2058,12 +2058,12 @@ - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2079,12 +2079,12 @@ - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2100,12 +2100,12 @@ - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2163,12 +2163,12 @@ - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2184,12 +2184,12 @@ - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2205,12 +2205,12 @@ - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2226,12 +2226,12 @@ - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2247,12 +2247,12 @@ - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2268,12 +2268,12 @@ - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2331,12 +2331,12 @@ - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2394,12 +2394,12 @@ - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2415,12 +2415,12 @@ - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2436,12 +2436,12 @@ - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2457,12 +2457,12 @@ - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2478,12 +2478,12 @@ - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 diff --git a/clm-cl.json b/clm-cl.json index 93b42ef..a1b455e 100644 --- a/clm-cl.json +++ b/clm-cl.json @@ -899,10 +899,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2024-11-28" + "val": "2024-11-29" } ], - "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-cl.json" + "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-cl.json" }, "nodes": [ { @@ -1965,7 +1965,7 @@ } ], "comments": [ - "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." + "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2010,7 +2010,7 @@ } ], "comments": [ - "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." + "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2040,7 +2040,7 @@ } ], "comments": [ - "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." + "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2085,8 +2085,8 @@ } ], "comments": [ - "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", - "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." + "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", + "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2101,7 +2101,7 @@ } ], "comments": [ - "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." + "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2116,7 +2116,7 @@ } ], "comments": [ - "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." + "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2131,7 +2131,7 @@ } ], "comments": [ - "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." + "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2146,7 +2146,7 @@ } ], "comments": [ - "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." + "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2161,7 +2161,7 @@ } ], "comments": [ - "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." + "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2176,7 +2176,7 @@ } ], "comments": [ - "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." + "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2191,7 +2191,7 @@ } ], "comments": [ - "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." + "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2206,7 +2206,7 @@ } ], "comments": [ - "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." + "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2221,7 +2221,7 @@ } ], "comments": [ - "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." + "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2236,7 +2236,7 @@ } ], "comments": [ - "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." + "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2281,7 +2281,7 @@ } ], "comments": [ - "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." + "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2296,7 +2296,7 @@ } ], "comments": [ - "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." + "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2311,7 +2311,7 @@ } ], "comments": [ - "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." + "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2326,7 +2326,7 @@ } ], "comments": [ - "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." + "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2341,7 +2341,7 @@ } ], "comments": [ - "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." + "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2356,7 +2356,7 @@ } ], "comments": [ - "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." + "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2401,7 +2401,7 @@ } ], "comments": [ - "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." + "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2446,7 +2446,7 @@ } ], "comments": [ - "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." + "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2461,7 +2461,7 @@ } ], "comments": [ - "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." + "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2476,7 +2476,7 @@ } ], "comments": [ - "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." + "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2491,7 +2491,7 @@ } ], "comments": [ - "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." + "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -2506,7 +2506,7 @@ } ], "comments": [ - "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." + "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ] }, "type": "CLASS" diff --git a/clm-cl.obo b/clm-cl.obo index 057942e..4afec05 100644 --- a/clm-cl.obo +++ b/clm-cl.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: clm/releases/2024-11-28/clm-cl.owl +data-version: clm/releases/2024-11-29/clm-cl.owl idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# @@ -8,7 +8,7 @@ property_value: dce:type IAO:8000001 property_value: dcterms:description "None" xsd:string property_value: dcterms:license https://creativecommons.org/licenses/unspecified property_value: dcterms:title "Cell Markers Ontology" xsd:string -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string [Term] id: CL:0000583 @@ -30,7 +30,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002075 -comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000061 ! has characterizing marker set NS forest marker set of brush cell of tracheobronchial tree (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -48,7 +48,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002480 -comment: The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000027 ! has characterizing marker set NS forest marker set of nasal mucosa goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -60,7 +60,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0017000 -comment: The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000032 ! has characterizing marker set NS forest marker set of pulmonary ionocyte (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -78,69 +78,69 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000312 -comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} -comment: The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000026 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). relationship: RO:0015004 CLM:1000028 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023011 -comment: The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000074 ! has characterizing marker set NS forest marker set of lamp5 GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023015 -comment: The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000081 ! has characterizing marker set NS forest marker set of sncg GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023016 -comment: The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000085 ! has characterizing marker set NS forest marker set of VIP GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023017 -comment: The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000082 ! has characterizing marker set NS forest marker set of sst GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023018 -comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000080 ! has characterizing marker set NS forest marker set of pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023036 -comment: The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000063 ! has characterizing marker set NS forest marker set of chandelier pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023041 -comment: The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000067 ! has characterizing marker set NS forest marker set of L5 extratelencephalic projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023042 -comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000070 ! has characterizing marker set NS forest marker set of L6 corticothalamic-projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023046 -comment: The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000073 ! has characterizing marker set NS forest marker set of L6b glutamatergic neuron of the primary motor cortex (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023121 -comment: The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000083 ! has characterizing marker set NS forest marker set of sst chodl GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -158,37 +158,37 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030059 -comment: The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000065 ! has characterizing marker set NS forest marker set of L2/3 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030063 -comment: The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000066 ! has characterizing marker set NS forest marker set of L4 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030064 -comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000068 ! has characterizing marker set NS forest marker set of L5 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030065 -comment: The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000071 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030067 -comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000069 ! has characterizing marker set NS forest marker set of L5/6 near-projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030068 -comment: The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000072 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting Car3 glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -206,7 +206,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033023 -comment: The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000052 ! has characterizing marker set NS forest marker set of airway submucosal gland collecting duct epithelial cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -224,31 +224,31 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033043 -comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000031 ! has characterizing marker set NS forest marker set of lung interstitial macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033048 -comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000059 ! has characterizing marker set NS forest marker set of respiratory suprabasal cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033077 -comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000006 ! has characterizing marker set NS forest marker set of cycling alveolar macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033080 -comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000010 ! has characterizing marker set NS forest marker set of cycling pulmonary alveolar type 2 cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4042013 -comment: The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000075 ! has characterizing marker set NS forest marker set of Lamp5 Lhx6 neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 diff --git a/clm-cl.owl b/clm-cl.owl index 5f3408d..298515f 100644 --- a/clm-cl.owl +++ b/clm-cl.owl @@ -11,12 +11,12 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 @@ -1967,12 +1967,12 @@ - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2030,12 +2030,12 @@ - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2072,12 +2072,12 @@ - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2141,19 +2141,19 @@ - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2169,12 +2169,12 @@ - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2190,12 +2190,12 @@ - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2211,12 +2211,12 @@ - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2232,12 +2232,12 @@ - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2253,12 +2253,12 @@ - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2274,12 +2274,12 @@ - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2295,12 +2295,12 @@ - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2316,12 +2316,12 @@ - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2337,12 +2337,12 @@ - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2358,12 +2358,12 @@ - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2421,12 +2421,12 @@ - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2442,12 +2442,12 @@ - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2463,12 +2463,12 @@ - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2484,12 +2484,12 @@ - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2505,12 +2505,12 @@ - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2526,12 +2526,12 @@ - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2589,12 +2589,12 @@ - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2652,12 +2652,12 @@ - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2673,12 +2673,12 @@ - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2694,12 +2694,12 @@ - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2715,12 +2715,12 @@ - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -2736,12 +2736,12 @@ - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 diff --git a/clm-full.json b/clm-full.json index a990348..2bcb18e 100644 --- a/clm-full.json +++ b/clm-full.json @@ -13,9 +13,9 @@ "val" : "Cell Markers Ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2024-11-28" + "val" : "2024-11-29" } ], - "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-full.json" + "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-full.json" }, "nodes" : [ { "id" : "http://identifiers.org/ensembl/ENSG00000006128", @@ -5279,7 +5279,7 @@ "val" : "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known.", "xrefs" : [ "GOC:tfm", "ISBN:0517223651", "PMID:15817800" ] }, - "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -6362,7 +6362,7 @@ "val" : "A goblet cell located in the nasal epithelium.", "xrefs" : [ "GOC:cjm", "GOC:tfm" ] }, - "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "MP:0002262" } ], @@ -7883,7 +7883,7 @@ "val" : "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice.", "xrefs" : [ "PMID:30069044", "PMID:30069046" ] }, - "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0017000" } ], @@ -8318,7 +8318,7 @@ "val" : "A goblet cell that is part of the epithelium of bronchus.", "xrefs" : [ "GOC:tfm" ] }, - "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "FMA:263032" } ], @@ -9670,7 +9670,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5.", "xrefs" : [ "PMID:30382198", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770149" } ], @@ -9719,7 +9719,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg.", "xrefs" : [ "PMID:33186530", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770150" } ], @@ -9737,7 +9737,7 @@ "val" : "A transcriptomically distinct cortical GABAergic neuron that expresses the vasocactive intestinal polypeptide and that has its soma located in the cerebral cortex. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Vip.", "xrefs" : [ "PMID:33186530", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770151" } ], @@ -9758,7 +9758,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst). The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Sst.", "xrefs" : [ "PMID:27477017", "PMID:33742131", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021).", "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], + "comments" : [ "In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021).", "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770152" } ], @@ -9776,7 +9776,7 @@ "val" : "A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb.", "xrefs" : [ "PMID:27477017", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770154" } ], @@ -9794,7 +9794,7 @@ "val" : "A transcriptomically distinct pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier.", "xrefs" : [ "PMID:27477017", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag.", "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], + "comments" : [ "In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag.", "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0107356" } ], @@ -9839,7 +9839,7 @@ "val" : "A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET.", "xrefs" : [ "PMID:34616075", "PMID:37824655", "https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/" ] }, - "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -9854,7 +9854,7 @@ "val" : "A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT.", "xrefs" : [ "PMID:34616075", "PMID:37824655", "https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/" ] }, - "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -9882,7 +9882,7 @@ "val" : "An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex.", "xrefs" : [ "PMID:33184512" ] }, - "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10068,7 +10068,7 @@ "val" : "A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl.", "xrefs" : [ "PMID:15845086", "PMID:31209381", "PMID:33372656", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10183,7 +10183,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found between cortical layer 2-4. This intratelencephalic-projecting glutamatergic neuron has thin-tufted apical dendrites and extends its axonal projection into L5 in the neocortex. This neuronal type has a hyperpolarised resting membrane potential. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L2/3 IT.", "xrefs" : [ "PMID:25622573", "PMID:34004146", "PMID:37292694", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3.", "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], + "comments" : [ "Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3.", "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770156" } ], @@ -10221,7 +10221,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT.", "xrefs" : [ "PMID:37292694", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3.", "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], + "comments" : [ "Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3.", "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10236,7 +10236,7 @@ "val" : "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT.", "xrefs" : [ "PMID:37292694", "PMID:37609206", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770157" } ], @@ -10254,7 +10254,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT.", "xrefs" : [ "PMID:37292694", "PMID:37609206", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770158" } ], @@ -10272,7 +10272,7 @@ "val" : "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6.", "xrefs" : [ "PMID:34004146", "PMID:37292694", "PMID:37824655" ] }, - "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10287,7 +10287,7 @@ "val" : "A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3.", "xrefs" : [ "PMID:34004146", "PMID:37824655", "doi:10.1007/s00424-024-02923-2", "doi:10.1101/2022.11.30.518285" ] }, - "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10440,7 +10440,7 @@ "val" : "An epithelial cell that is part of a collecting duct of an airway submucosal gland.", "xrefs" : [ "PMID:25648514", "PMID:29656943" ] }, - "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10495,7 +10495,7 @@ "val" : "A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation.", "xrefs" : [ "PMID:33382972", "PMID:35017701", "PMID:36211428" ] }, - "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10510,7 +10510,7 @@ "val" : "A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes.", "xrefs" : [ "PMID:25564622" ] }, - "comments" : [ "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.", "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], + "comments" : [ "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.", "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10606,7 +10606,7 @@ "val" : "A(n) alveolar macrophage that is cycling.", "xrefs" : [ "PMID:37291214" ] }, - "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10631,7 +10631,7 @@ "val" : "A(n) pulmonary alveolar type 2 cell that is cycling.", "xrefs" : [ "PMID:37291214" ] }, - "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10686,7 +10686,7 @@ "val" : "A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6.", "xrefs" : [ "PMID:34004146", "PMID:36007006", "PMID:37824655", "PMID:37824669", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" diff --git a/clm-full.obo b/clm-full.obo index 85b7403..5a25bc8 100644 --- a/clm-full.obo +++ b/clm-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: clm/releases/2024-11-28/clm-full.owl +data-version: clm/releases/2024-11-29/clm-full.owl idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# @@ -7,7 +7,7 @@ ontology: clm/clm-full property_value: dcterms:description "None" xsd:string property_value: dcterms:license https://creativecommons.org/licenses/unspecified property_value: dcterms:title "Cell Markers Ontology" xsd:string -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string [Term] id: CHEBI:24431 @@ -3996,7 +3996,7 @@ is_a: CL:0002086 ! specialized cardiac myocyte id: CL:0002075 name: brush cell of tracheobronchial tree def: "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known." [GOC:tfm, ISBN:0517223651, PMID:15817800] -comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0002204 ! brush cell intersection_of: CL:0002204 ! brush cell @@ -4805,7 +4805,7 @@ relationship: RO:0002104 PR:000001012 id: CL:0002480 name: nasal mucosa goblet cell def: "A goblet cell located in the nasal epithelium." [GOC:cjm, GOC:tfm] -comment: The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: MP:0002262 is_a: CL:0002370 ! respiratory goblet cell is_a: CL:0002631 ! epithelial cell of upper respiratory tract @@ -6041,7 +6041,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:0017000 name: pulmonary ionocyte def: "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice." [PMID:30069044, PMID:30069046] -comment: The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: https://cellxgene.cziscience.com/cellguide/CL_0017000 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0005006 ! ionocyte @@ -6391,8 +6391,8 @@ relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle id: CL:1000312 name: bronchial goblet cell def: "A goblet cell that is part of the epithelium of bronchus." [GOC:tfm] -comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} -comment: The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: FMA:263032 is_a: CL:0002328 ! bronchial epithelial cell is_a: CL:0019003 ! tracheobronchial goblet cell @@ -7458,7 +7458,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023011 name: lamp5 GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:30382198, PMID:37824655] -comment: The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770149 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7498,7 +7498,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023015 name: sncg GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:33186530, PMID:37824655] -comment: The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770150 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7513,7 +7513,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023016 name: VIP GABAergic cortical interneuron def: "A transcriptomically distinct cortical GABAergic neuron that expresses the vasocactive intestinal polypeptide and that has its soma located in the cerebral cortex. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Vip." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:33186530, PMID:37824655] -comment: The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770151 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7530,7 +7530,7 @@ id: CL:4023017 name: sst GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst). The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Sst." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017, PMID:33742131, PMID:37824655] comment: In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021). {xref="PMID:30792151", xref="PMID:33742131", xref="PMID:28821651", xref="PMID:32494634"} -comment: The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770152 is_a: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron intersection_of: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron @@ -7545,7 +7545,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023018 name: pvalb GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017, PMID:37824655] -comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770154 is_a: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron intersection_of: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron @@ -7561,7 +7561,7 @@ id: CL:4023036 name: chandelier pvalb GABAergic cortical interneuron def: "A transcriptomically distinct pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017] comment: In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. {xref="PMID:27477017"} -comment: The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0107356 is_a: CL:4023018 ! pvalb GABAergic cortical interneuron is_a: CL:4023083 ! chandelier cell @@ -7590,7 +7590,7 @@ is_a: CL:4023008 ! intratelencephalic-projecting glutamatergic cortical neuron id: CL:4023041 name: L5 extratelencephalic projecting glutamatergic cortical neuron def: "A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET." [https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/, PMID:34616075, PMID:37824655] -comment: The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023009 ! extratelencephalic-projecting glutamatergic cortical neuron is_a: CL:4023111 ! cerebral cortex pyramidal neuron intersection_of: CL:4023009 ! extratelencephalic-projecting glutamatergic cortical neuron @@ -7603,7 +7603,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023042 name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT." [https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/, PMID:34616075, PMID:37824655] -comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023013 ! corticothalamic-projecting glutamatergic cortical neuron intersection_of: CL:4023013 ! corticothalamic-projecting glutamatergic cortical neuron intersection_of: RO:0002100 UBERON:0005395 ! cortical layer VI @@ -7626,7 +7626,7 @@ relationship: RO:0002100 UBERON:0001384 ! primary motor cortex id: CL:4023046 name: L6b glutamatergic neuron of the primary motor cortex def: "An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex." [PMID:33184512] -comment: The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023038 ! L6b glutamatergic cortical neuron relationship: RO:0002100 UBERON:0001384 ! primary motor cortex relationship: RO:0015004 CLM:1000073 ! has characterizing marker set NS forest marker set of L6b glutamatergic neuron of the primary motor cortex (Human Brain). @@ -7784,7 +7784,7 @@ intersection_of: RO:0002100 UBERON:0000956 ! cerebral cortex id: CL:4023121 name: sst chodl GABAergic cortical interneuron def: "A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:15845086, PMID:31209381, PMID:33372656, PMID:37824655] -comment: The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023017 ! sst GABAergic cortical interneuron relationship: RO:0002292 PR:000005444 relationship: RO:0015004 CLM:1000083 ! has characterizing marker set NS forest marker set of sst chodl GABAergic cortical interneuron (Human Brain). @@ -7882,7 +7882,7 @@ id: CL:4030059 name: L2/3 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found between cortical layer 2-4. This intratelencephalic-projecting glutamatergic neuron has thin-tufted apical dendrites and extends its axonal projection into L5 in the neocortex. This neuronal type has a hyperpolarised resting membrane potential. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L2/3 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:25622573, PMID:34004146, PMID:37292694, PMID:37824655] comment: Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3. {xref="PMID:37824655"} -comment: The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770156 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7914,7 +7914,7 @@ id: CL:4030063 name: L4 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37824655] comment: Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3. -comment: The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: RO:0002100 UBERON:0005393 ! cortical layer IV @@ -7926,7 +7926,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030064 name: L5 intratelencephalic projecting glutamatergic neuron def: "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37609206, PMID:37824655] -comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770157 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7939,7 +7939,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030065 name: L6 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37609206, PMID:37824655] -comment: The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770158 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7952,7 +7952,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030067 name: L5/6 near-projecting glutamatergic neuron def: "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6." [PMID:34004146, PMID:37292694, PMID:37824655] -comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023012 ! near-projecting glutamatergic cortical neuron intersection_of: CL:4023012 ! near-projecting glutamatergic cortical neuron intersection_of: RO:0002100 UBERON:8440002 ! cortical layer V/VI @@ -7964,7 +7964,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030068 name: L6 intratelencephalic projecting Car3 glutamatergic neuron def: "A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3." [doi:10.1007/s00424-024-02923-2, doi:10.1101/2022.11.30.518285, PMID:34004146, PMID:37824655] -comment: The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: BFO:0000002 is_a: CL:4030065 ! L6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4030065 ! L6 intratelencephalic projecting glutamatergic neuron @@ -8089,7 +8089,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4033023 name: airway submucosal gland collecting duct epithelial cell def: "An epithelial cell that is part of a collecting duct of an airway submucosal gland." [PMID:25648514, PMID:29656943] -comment: The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000066 ! epithelial cell relationship: BFO:0000050 UBERON:8410077 ! part of airway submucosal gland relationship: RO:0015004 CLM:1000052 ! has characterizing marker set NS forest marker set of airway submucosal gland collecting duct epithelial cell (Human Lung). @@ -8130,7 +8130,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4033043 name: lung interstitial macrophage def: "A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation." [PMID:33382972, PMID:35017701, PMID:36211428] -comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000864 ! tissue-resident macrophage is_a: CL:0002320 ! connective tissue cell is_a: CL:1001603 ! lung macrophage @@ -8143,7 +8143,7 @@ id: CL:4033048 name: respiratory suprabasal cell def: "A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes." [PMID:25564622] comment: In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3. {xref="PMID:25658372", xref="doi:10.1101/2023.04.20.537495"} -comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002368 ! respiratory epithelial cell is_a: CL:0011026 ! progenitor cell relationship: RO:0002202 CL:0002633 ! respiratory basal cell @@ -8237,7 +8237,7 @@ intersection_of: RO:0000086 PATO:0002354 id: CL:4033077 name: cycling alveolar macrophage def: "A(n) alveolar macrophage that is cycling." [PMID:37291214] -comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000583 ! alveolar macrophage is_a: CL:4033076 ! cycling macrophage intersection_of: CL:0000583 ! alveolar macrophage @@ -8261,7 +8261,7 @@ relationship: RO:0000086 PATO:0002354 id: CL:4033080 name: cycling pulmonary alveolar type 2 cell def: "A(n) pulmonary alveolar type 2 cell that is cycling." [PMID:37291214] -comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002063 ! pulmonary alveolar type 2 cell intersection_of: CL:0002063 ! pulmonary alveolar type 2 cell intersection_of: RO:0000056 GO:0022402 ! participates in cell cycle process @@ -8313,7 +8313,7 @@ relationship: BFO:0000050 UBERON:0004088 ! part of orbital region id: CL:4042013 name: Lamp5 Lhx6 neuron def: "A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:34004146, PMID:36007006, PMID:37824655, PMID:37824669] -comment: The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000075 ! has characterizing marker set NS forest marker set of Lamp5 Lhx6 neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 diff --git a/clm-full.owl b/clm-full.owl index ac80df8..5b20453 100644 --- a/clm-full.owl +++ b/clm-full.owl @@ -11,11 +11,11 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 @@ -16884,7 +16884,7 @@ Until recently, glucagon has been considered a pancreas-specific hormone; howeve Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known. - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). brush cell of tracheobronchial tree @@ -16898,7 +16898,7 @@ Until recently, glucagon has been considered a pancreas-specific hormone; howeve - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -19579,7 +19579,7 @@ In addition to their mucus-secreting capabilities, respiratory goblet cells also A goblet cell located in the nasal epithelium. MP:0002262 - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). nasal mucosa goblet cell @@ -19592,7 +19592,7 @@ In addition to their mucus-secreting capabilities, respiratory goblet cells also - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -23803,7 +23803,7 @@ The pulmonary ionocyte is a relatively newly identified, specific epithelial cel The main responsibility of the pulmonary ionocyte pertains to the regulation and mobilization of chloride ions. They express a high level of CFTR (Cystic Fibrosis Transmembrane Conductance Regulator) gene, which encodes a protein channel across the membrane of cells that produce mucus, sweat, saliva, tears, and digestive enzymes. The activity of CFTR regulates the movement of chloride ions and fluids in and out of cells, which helps maintain a balance of fluid in the organs they are expressed in. If CFTR is dysfunctional, it can cause conditions such as cystic fibrosis, characterized by thick, sticky mucus that can clog the lungs and obstruct the pancreas, leading to respiratory and digestive issues. The discovery of this cell type offers new doors to the treatment and further understanding of diseases like cystic fibrosis. Increased understanding of pulmonary ionocytes could contribute to the development of novel therapeutic approaches to manipulate the function of CFTR in the lungs and other organs affected by dysfunctional CFTR. https://cellxgene.cziscience.com/cellguide/CL_0017000 - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). pulmonary ionocyte @@ -23828,7 +23828,7 @@ The discovery of this cell type offers new doors to the treatment and further un - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -24983,8 +24983,8 @@ The primary function of PNECs is linked to regulation and maintenance of the lun A goblet cell that is part of the epithelium of bronchus. FMA:263032 - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). bronchial goblet cell @@ -24996,13 +24996,13 @@ The primary function of PNECs is linked to regulation and maintenance of the lun - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28589,7 +28589,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5. ILX:0770149 - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). lamp5 GABAergic cortical interneuron @@ -28603,7 +28603,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28726,7 +28726,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg. ILX:0770150 - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). sncg GABAergic cortical interneuron @@ -28740,7 +28740,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28785,7 +28785,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o This neuronal type is distinguished by its heterogeneous morphology and electrophysiological characteristics (Pronneke et al., 2015,2020; Apicella and Marchionni, 2022). Variations in morphology and firing patterns are observed in human cortical VIP interneurons. In a study by Lee et al., 2023, four distinct subtypes of VIP neurons were identified, each exhibiting unique morphologies, soma locations, and electrophysiological properties. These subtypes are defined according to their transcriptomic markers: LBH-VIP and CCD184-VIP, both of which display a bipolar morphology with axons and dendrites extending across cortical layers; and SY16-VIP and ADAMTSL1-VIP, characterized by a dendritic arbor that spreads horizontally within the same layer as the soma (Lee et al., 2023). Disruption or malfunction of VIP cortical interneuron is implicated in neurodevelopmental disorders such as Rett Syndrome and Dravet Syndrome (Goff and Goldberg 2021). ILX:0770151 - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). VIP GABAergic cortical interneuron @@ -28808,7 +28808,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28853,7 +28853,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0770152 In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021). - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). sst GABAergic cortical interneuron @@ -28877,7 +28877,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28921,7 +28921,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb. ILX:0770154 - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). pvalb GABAergic cortical interneuron @@ -28935,7 +28935,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28956,7 +28956,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0107356 In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). chandelier pvalb GABAergic cortical interneuron @@ -28975,7 +28975,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29067,7 +29067,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET. - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). L5 extratelencephalic projecting glutamatergic cortical neuron @@ -29081,7 +29081,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29122,7 +29122,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT. - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). L6 corticothalamic-projecting glutamatergic cortical neuron @@ -29136,7 +29136,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29196,7 +29196,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex. - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). L6b glutamatergic neuron of the primary motor cortex @@ -29208,7 +29208,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29736,7 +29736,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl. - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). sst chodl GABAergic cortical interneuron @@ -29752,7 +29752,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30106,7 +30106,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0770156 Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3. - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). L2/3 intratelencephalic projecting glutamatergic neuron @@ -30128,7 +30128,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30230,7 +30230,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT. Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3. - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). L4 intratelencephalic projecting glutamatergic neuron @@ -30244,7 +30244,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30280,7 +30280,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT. ILX:0770157 - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). L5 intratelencephalic projecting glutamatergic neuron @@ -30295,7 +30295,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30331,7 +30331,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT. ILX:0770158 - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). L6 intratelencephalic projecting glutamatergic neuron @@ -30346,7 +30346,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30381,7 +30381,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6. - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). L5/6 near-projecting glutamatergic neuron @@ -30395,7 +30395,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30435,7 +30435,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3. - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). L6 intratelencephalic projecting Car3 glutamatergic neuron @@ -30450,7 +30450,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30853,7 +30853,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An epithelial cell that is part of a collecting duct of an airway submucosal gland. - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). airway submucosal gland collecting duct epithelial cell @@ -30866,7 +30866,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30997,7 +30997,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation. - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). lung interstitial macrophage @@ -31011,7 +31011,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31037,7 +31037,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes. In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3. - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). respiratory suprabasal cell @@ -31056,7 +31056,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31381,7 +31381,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A(n) alveolar macrophage that is cycling. - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). cycling alveolar macrophage @@ -31393,7 +31393,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31481,7 +31481,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A(n) pulmonary alveolar type 2 cell that is cycling. - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). cycling pulmonary alveolar type 2 cell @@ -31493,7 +31493,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31673,7 +31673,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6. - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). Lamp5 Lhx6 neuron @@ -31689,7 +31689,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 diff --git a/clm-kg.json b/clm-kg.json index d15bbf9..49db939 100644 --- a/clm-kg.json +++ b/clm-kg.json @@ -116779,10 +116779,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2024-11-28" + "val": "2024-11-29" } ], - "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-kg.json" + "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-kg.json" }, "nodes": [ { @@ -784228,12 +784228,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/054da4a9-6679-467d-851b-f6e4ebb63c0e", + "id": "http://example.org/05a161b8-3037-4fc4-a456-435ca9ade8f1", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001126" + "val": "http://purl.obolibrary.org/obo/CLM_1000053" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784241,11 +784241,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3_2" + "val": "SMG mucous" } ], "comments": [ - "A L6 IT Car3_2 in the Human Brain has the gene markers SMYD1, ITGB8 with a NS-Forest FBeta value of 0.6594036697247707s." + "A SMG mucous in the Human Lung has the gene markers BPIFB2 with a NS-Forest FBeta value of 0.93s." ] }, "type": "INDIVIDUAL" @@ -784365,6 +784365,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/09610961-0253-4433-bd68-71662bb7f790", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000057" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Smooth muscle FAM83D+" + } + ], + "comments": [ + "A Smooth muscle FAM83D+ in the Human Lung has the gene markers ACTG2 with a NS-Forest FBeta value of 0.77s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/0a314e5d-3a14-4f15-8b65-257364ebd00d", "meta": { @@ -784435,12 +784458,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/0dceb01b-4f33-40e4-b27b-c51eaeeed4d9", + "id": "http://example.org/0c68ab7f-c9dc-4512-ae06-40584a069e76", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001106" + "val": "http://purl.obolibrary.org/obo/CLM_1000038" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784448,22 +784471,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 ET_1" + "val": "Migratory DCs" } ], "comments": [ - "A L5 ET_1 in the Human Brain has the gene markers LINC00922, POU3F1 with a NS-Forest FBeta value of 0.728891820580475s." + "A Migratory DCs in the Human Lung has the gene markers CCL22 with a NS-Forest FBeta value of 0.50s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/0dfccb77-623b-4af4-92a5-d02b9941432b", + "id": "http://example.org/0dceb01b-4f33-40e4-b27b-c51eaeeed4d9", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001156" + "val": "http://purl.obolibrary.org/obo/CLM_1001106" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784471,22 +784494,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Pvalb_4" + "val": "L5 ET_1" } ], "comments": [ - "A Pvalb_4 in the Human Brain has the gene markers MT-ND4L, RGS5_ENSG00000143248, WIF1, TAC1 with a NS-Forest FBeta value of 0.4390934844192635s." + "A L5 ET_1 in the Human Brain has the gene markers LINC00922, POU3F1 with a NS-Forest FBeta value of 0.728891820580475s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/0f859c55-f825-47b9-8102-4f9e81169898", + "id": "http://example.org/0dfccb77-623b-4af4-92a5-d02b9941432b", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001101" + "val": "http://purl.obolibrary.org/obo/CLM_1001156" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784494,22 +784517,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_2" + "val": "Pvalb_4" } ], "comments": [ - "A L4 IT_2 in the Human Brain has the gene markers C6orf141, ST8SIA4 with a NS-Forest FBeta value of 0.7738095238095238s." + "A Pvalb_4 in the Human Brain has the gene markers MT-ND4L, RGS5_ENSG00000143248, WIF1, TAC1 with a NS-Forest FBeta value of 0.4390934844192635s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/0fd4d7be-306c-4035-a7f5-81dc0291275e", + "id": "http://example.org/11dd76d5-f155-4853-ad98-0a6ff36dead6", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001099" + "val": "http://purl.obolibrary.org/obo/CLM_1000059" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784517,22 +784540,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_6" + "val": "Suprabasal" } ], "comments": [ - "A L2/3 IT_6 in the Human Brain has the gene markers LINC00507, ADAMTS3, LY86-AS1 with a NS-Forest FBeta value of 0.5509868421052632s." + "A Suprabasal in the Human Lung has the gene markers TNC, KRT15, SERPINB4 with a NS-Forest FBeta value of 0.62s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/12096c53-d3e0-49b0-ac4b-4e528bd3aded", + "id": "http://example.org/1283e885-59de-4dde-af7e-7ac63020b98a", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001127" + "val": "http://purl.obolibrary.org/obo/CLM_1001107" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784540,22 +784563,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT_1" + "val": "L5 ET_2" } ], "comments": [ - "A L6 IT_1 in the Human Brain has the gene markers THEMIS, HOPX, MKX with a NS-Forest FBeta value of 0.6710122699386504s." + "A L5 ET_2 in the Human Brain has the gene markers ATP6V1C2, LRP2, ST8SIA2 with a NS-Forest FBeta value of 0.7593749999999999s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/1283e885-59de-4dde-af7e-7ac63020b98a", + "id": "http://example.org/13122086-061b-4b65-9825-195dec515b7f", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001107" + "val": "http://purl.obolibrary.org/obo/CLM_1000026" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784563,11 +784586,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 ET_2" + "val": "Goblet (bronchial)" } ], "comments": [ - "A L5 ET_2 in the Human Brain has the gene markers ATP6V1C2, LRP2, ST8SIA2 with a NS-Forest FBeta value of 0.7593749999999999s." + "A Goblet (bronchial) in the Human Lung has the gene markers PLCG2, ANKRD36C with a NS-Forest FBeta value of 0.55s." ] }, "type": "INDIVIDUAL" @@ -784849,12 +784872,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/1da98ef8-943f-4e50-bc47-6f847e0f5e06", + "id": "http://example.org/1d4a4b12-aabc-4a87-812a-d9e1e44fe6f0", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001100" + "val": "http://purl.obolibrary.org/obo/CLM_1000032" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784862,11 +784885,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_1" + "val": "Ionocyte" } ], "comments": [ - "A L4 IT_1 in the Human Brain has the gene markers TPBG, RP11-197K6.1, ST8SIA4 with a NS-Forest FBeta value of 0.6129032258064517s." + "A Ionocyte in the Human Lung has the gene markers ASCL3, BSND with a NS-Forest FBeta value of 0.82s." ] }, "type": "INDIVIDUAL" @@ -784941,12 +784964,35 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/1f3c1e37-bebb-4c4a-948e-d46bf6c2c1fb", + "id": "http://example.org/1ef3db16-f77e-4805-bd49-90e2d51cbf01", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000013" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "CD4 T cells" + } + ], + "comments": [ + "A CD4 T cells in the Human Lung has the gene markers LTB, CD3D with a NS-Forest FBeta value of 0.59s." + ] + }, + "type": "INDIVIDUAL" + }, + { + "id": "http://example.org/1f9d3b88-1c24-4ace-8f4c-118e31a87f05", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001112" + "val": "http://purl.obolibrary.org/obo/CLM_1000023" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -784954,11 +785000,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_3" + "val": "EC general capillary" } ], "comments": [ - "A L5 IT_3 in the Human Brain has the gene markers RPRM, HPCA, RORB with a NS-Forest FBeta value of 0.49479166666666663s." + "A EC general capillary in the Human Lung has the gene markers FCN3, CA4 with a NS-Forest FBeta value of 0.78s." ] }, "type": "INDIVIDUAL" @@ -785125,12 +785171,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/261cbefd-4d9d-44db-bd78-185068bfae4b", + "id": "http://example.org/27ca98f6-77ae-4b31-8a0f-6baad7aa15c3", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001105" + "val": "http://purl.obolibrary.org/obo/CLM_1000022" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785138,11 +785184,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_6" + "val": "EC arterial" } ], "comments": [ - "A L4 IT_6 in the Human Brain has the gene markers PLEKHH2, CLMN, ST8SIA4 with a NS-Forest FBeta value of 0.6703910614525139s." + "A EC arterial in the Human Lung has the gene markers DKK2 with a NS-Forest FBeta value of 0.71s." ] }, "type": "INDIVIDUAL" @@ -785216,6 +785262,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/2d448eff-9ef8-451a-adec-6df983d69ca2", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000003" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Alveolar macrophages" + } + ], + "comments": [ + "A Alveolar macrophages in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.80s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/2d458b48-ff97-4f6d-a58c-3d9212b1fda5", "meta": { @@ -785309,12 +785378,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/307ef47f-932d-4c47-9aa5-4aded8e28b19", + "id": "http://example.org/2f452984-b170-49fa-b888-d7f87cd04e03", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000072" + "val": "http://purl.obolibrary.org/obo/CLM_1000004" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785322,11 +785391,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3" + "val": "Alveolar Mph CCL3+" } ], "comments": [ - "A L6 IT Car3 in the Human Brain has the gene markers SMYD1, THEMIS with a NS-Forest FBeta value of 0.877752028s." + "A Alveolar Mph CCL3+ in the Human Lung has the gene markers TNIP3, CXCL5 with a NS-Forest FBeta value of 0.67s." ] }, "type": "INDIVIDUAL" @@ -785354,29 +785423,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/31ff1826-df75-4fd3-ab57-56b6547bd238", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001103" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_4" - } - ], - "comments": [ - "A L4 IT_4 in the Human Brain has the gene markers STAC, KCNH8, SYT2 with a NS-Forest FBeta value of 0.6526243093922651s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/32dc9e23-7baa-4171-b2fb-634d2e37b7be", "meta": { @@ -785423,29 +785469,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/34f845c4-f1e6-4ba6-b21c-e16eaea92192", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001094" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_1" - } - ], - "comments": [ - "A L2/3 IT_1 in the Human Brain has the gene markers PRSS12, ROS1, COL5A2, SLC38A11 with a NS-Forest FBeta value of 0.5517711171662125s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/351b7150-94e2-4433-a24e-3e5f1da5ce85", "meta": { @@ -785516,12 +785539,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/380d85c3-b572-4c31-8950-99760dfbb26c", + "id": "http://example.org/387cc996-d53d-4915-8287-38dc5bcf53bf", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001110" + "val": "http://purl.obolibrary.org/obo/CLM_1001157" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785529,22 +785552,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_1" + "val": "Pvalb_5" } ], "comments": [ - "A L5 IT_1 in the Human Brain has the gene markers CHST2, TLL1, RORB with a NS-Forest FBeta value of 0.6250000000000001s." + "A Pvalb_5 in the Human Brain has the gene markers SNTB1, COBLL1, GPR149, TAC1 with a NS-Forest FBeta value of 0.6364329268292682s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/3824f53b-16bc-4f2c-822f-c9e559a76dd7", + "id": "http://example.org/38963ffe-cd49-4dd3-8582-0b5987143bbe", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001125" + "val": "http://purl.obolibrary.org/obo/CLM_1001220" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785552,22 +785575,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3_1" + "val": "Vip_11" } ], "comments": [ - "A L6 IT Car3_1 in the Human Brain has the gene markers LINC00348 with a NS-Forest FBeta value of 0.665s." + "A Vip_11 in the Human Brain has the gene markers ABI3BP, MCTP2, SLC22A3, PROS1 with a NS-Forest FBeta value of 0.43523676880222845s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/387cc996-d53d-4915-8287-38dc5bcf53bf", + "id": "http://example.org/389e37ce-2de6-47f4-88f9-5ce07fa627a0", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001157" + "val": "http://purl.obolibrary.org/obo/CLM_1001137" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785575,22 +785598,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Pvalb_5" + "val": "Lamp5_2" } ], "comments": [ - "A Pvalb_5 in the Human Brain has the gene markers SNTB1, COBLL1, GPR149, TAC1 with a NS-Forest FBeta value of 0.6364329268292682s." + "A Lamp5_2 in the Human Brain has the gene markers PBX3, KIT with a NS-Forest FBeta value of 0.7316272965879266s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/38963ffe-cd49-4dd3-8582-0b5987143bbe", + "id": "http://example.org/38b65b78-8e9c-4e2e-b3b5-cc121efd7805", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001220" + "val": "http://purl.obolibrary.org/obo/CLM_1000050" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785598,22 +785621,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_11" + "val": "pre-TB secretory" } ], "comments": [ - "A Vip_11 in the Human Brain has the gene markers ABI3BP, MCTP2, SLC22A3, PROS1 with a NS-Forest FBeta value of 0.43523676880222845s." + "A pre-TB secretory in the Human Lung has the gene markers SCGB1A1, SFTPB with a NS-Forest FBeta value of 0.73s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/389e37ce-2de6-47f4-88f9-5ce07fa627a0", + "id": "http://example.org/3a095232-0cbf-41e8-8958-ac2addae1fcd", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001137" + "val": "http://purl.obolibrary.org/obo/CLM_1000025" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785621,22 +785644,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Lamp5_2" + "val": "EC venous systemic" } ], "comments": [ - "A Lamp5_2 in the Human Brain has the gene markers PBX3, KIT with a NS-Forest FBeta value of 0.7316272965879266s." + "A EC venous systemic in the Human Lung has the gene markers PLVAP, EMCN with a NS-Forest FBeta value of 0.63s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/3c077be9-c44f-42fd-81c3-66babe4ae6e6", + "id": "http://example.org/3a321ad7-1888-4b01-a3b7-99188a7bd701", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001209" + "val": "http://purl.obolibrary.org/obo/CLM_1000018" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785644,22 +785667,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "VLMC_2" + "val": "DC1" } ], "comments": [ - "A VLMC_2 in the Human Brain has the gene markers SLC19A1, COLEC12 with a NS-Forest FBeta value of 0.876753507014028s." + "A DC1 in the Human Lung has the gene markers CLEC9A, DNASE1L3 with a NS-Forest FBeta value of 0.77s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/3c69c5fa-eb50-44a6-9696-c708d886184f", + "id": "http://example.org/3c077be9-c44f-42fd-81c3-66babe4ae6e6", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001105" + "val": "http://purl.obolibrary.org/obo/CLM_1001209" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785667,11 +785690,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_6" + "val": "VLMC_2" } ], "comments": [ - "A L4 IT_6 in the Human Brain has the gene markers PLEKHH2, CLMN, ST8SIA4 with a NS-Forest FBeta value of 0.6703910614525139s." + "A VLMC_2 in the Human Brain has the gene markers SLC19A1, COLEC12 with a NS-Forest FBeta value of 0.876753507014028s." ] }, "type": "INDIVIDUAL" @@ -785746,12 +785769,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/404cfd4d-f543-41bf-8c97-8963961e28d0", + "id": "http://example.org/40c40961-4a3f-4130-9e26-bff95e998493", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000066" + "val": "http://purl.obolibrary.org/obo/CLM_1000008" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785759,11 +785782,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT" + "val": "AT1" } ], "comments": [ - "A L4 IT in the Human Brain has the gene markers RORB, ST8SIA4 with a NS-Forest FBeta value of 0.720108696s." + "A AT1 in the Human Lung has the gene markers AGER with a NS-Forest FBeta value of 0.85s." ] }, "type": "INDIVIDUAL" @@ -785838,12 +785861,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/45ac7103-83e2-434b-86e9-ff2a7aad2ca3", + "id": "http://example.org/43e4a85a-e6bd-48b0-805c-667d2429cd32", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001100" + "val": "http://purl.obolibrary.org/obo/CLM_1000049" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785851,11 +785874,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_1" + "val": "Plasmacytoid DCs" } ], "comments": [ - "A L4 IT_1 in the Human Brain has the gene markers TPBG, RP11-197K6.1, ST8SIA4 with a NS-Forest FBeta value of 0.6129032258064517s." + "A Plasmacytoid DCs in the Human Lung has the gene markers LILRA4, JCHAIN with a NS-Forest FBeta value of 0.79s." ] }, "type": "INDIVIDUAL" @@ -785953,35 +785976,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/494a401d-12c2-4da4-9cf8-c05f359924ca", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001202" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_32" - } - ], - "comments": [ - "A Sst_32 in the Human Brain has the gene markers HPGD, PENK, EYA2 with a NS-Forest FBeta value of 0.40567282321899734s." - ] - }, - "type": "INDIVIDUAL" - }, - { - "id": "http://example.org/4b21f37f-902e-423c-a8d5-2740f05836d5", + "id": "http://example.org/493420ec-1b85-4b6b-92b4-c80e9c5185fd", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001094" + "val": "http://purl.obolibrary.org/obo/CLM_1000056" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -785989,22 +785989,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_1" + "val": "Smooth muscle" } ], "comments": [ - "A L2/3 IT_1 in the Human Brain has the gene markers PRSS12, ROS1, COL5A2, SLC38A11 with a NS-Forest FBeta value of 0.5517711171662125s." + "A Smooth muscle in the Human Lung has the gene markers ACTA2, TAGLN with a NS-Forest FBeta value of 0.69s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/4c103243-651d-43a2-8a61-7f9cdd8e53fa", + "id": "http://example.org/494a401d-12c2-4da4-9cf8-c05f359924ca", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000068" + "val": "http://purl.obolibrary.org/obo/CLM_1001202" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -786012,11 +786012,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT" + "val": "Sst_32" } ], "comments": [ - "A L5 IT in the Human Brain has the gene markers ARSJ, RORB, KCNK2 with a NS-Forest FBeta value of 0.764261336s." + "A Sst_32 in the Human Brain has the gene markers HPGD, PENK, EYA2 with a NS-Forest FBeta value of 0.40567282321899734s." ] }, "type": "INDIVIDUAL" @@ -786113,29 +786113,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/4f82e20a-0535-4bc9-b60d-fbcee07b7d7d", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001095" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_2" - } - ], - "comments": [ - "A L2/3 IT_2 in the Human Brain has the gene markers THSD4, TESPA1, TRPC3 with a NS-Forest FBeta value of 0.6621140142517815s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/504c1fa9-a4a3-4fdd-b8e9-823f43950925", "meta": { @@ -786183,12 +786160,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/5216640a-e65e-4a1a-8c6c-98697b477bea", + "id": "http://example.org/51915dea-bf5d-4f94-b815-17d278624f43", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001104" + "val": "http://purl.obolibrary.org/obo/CLM_1000001" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -786196,11 +786173,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_5" + "val": "Adventitial fibroblasts" } ], "comments": [ - "A L4 IT_5 in the Human Brain has the gene markers COL22A1, CMAHP with a NS-Forest FBeta value of 0.6576797385620915s." + "A Adventitial fibroblasts in the Human Lung has the gene markers SCARA5, CD248 with a NS-Forest FBeta value of 0.85s." ] }, "type": "INDIVIDUAL" @@ -786274,6 +786251,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/54fe0503-1d47-4b3a-945e-dcd3e02edb07", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000043" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Neuroendocrine" + } + ], + "comments": [ + "A Neuroendocrine in the Human Lung has the gene markers CHGA, GRP with a NS-Forest FBeta value of 0.94s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/55249b58-791c-4a2a-a405-f119fe3aab6e", "meta": { @@ -786343,6 +786343,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/571be27e-ad46-4c79-9e9e-840c3242d4bc", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000045" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Non-classical monocytes" + } + ], + "comments": [ + "A Non-classical monocytes in the Human Lung has the gene markers LILRB2, LILRB1 with a NS-Forest FBeta value of 0.46s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/57bc5b03-85a3-4230-b633-836e9519a0c1", "meta": { @@ -786435,6 +786458,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/58716fb2-4237-429e-b38f-db1adf6daab9", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000012" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Basal resting" + } + ], + "comments": [ + "A Basal resting in the Human Lung has the gene markers KRT15, KRT17 with a NS-Forest FBeta value of 0.75s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/58ad3c67-8972-4838-b8d8-d0950413aad2", "meta": { @@ -786505,12 +786551,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/59cd909c-2593-4170-a1b2-b65b96184253", + "id": "http://example.org/59d628d3-9629-41fc-8fbc-3d3adf676d0a", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001096" + "val": "http://purl.obolibrary.org/obo/CLM_1000015" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -786518,11 +786564,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_3" + "val": "Classical monocytes" } ], "comments": [ - "A L2/3 IT_3 in the Human Brain has the gene markers COL27A1, ONECUT2, MOXD1, BMPR1B with a NS-Forest FBeta value of 0.675117924528302s." + "A Classical monocytes in the Human Lung has the gene markers S100A12, FCN1 with a NS-Forest FBeta value of 0.77s." ] }, "type": "INDIVIDUAL" @@ -786574,12 +786620,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/5a1fc0ca-d3cb-4d0e-9a1d-93413453f997", + "id": "http://example.org/5a00c58e-24db-48f5-beab-db654b778265", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000071" + "val": "http://purl.obolibrary.org/obo/CLM_1000002" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -786587,11 +786633,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT" + "val": "Alveolar fibroblasts" } ], "comments": [ - "A L6 IT in the Human Brain has the gene markers LINC00507, THEMIS with a NS-Forest FBeta value of 0.641695703s." + "A Alveolar fibroblasts in the Human Lung has the gene markers AOC3, LUM with a NS-Forest FBeta value of 0.70s." ] }, "type": "INDIVIDUAL" @@ -786619,6 +786665,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/5b0a2e31-ad33-4746-876e-e0c08bc04f39", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000037" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Mesothelium" + } + ], + "comments": [ + "A Mesothelium in the Human Lung has the gene markers CALB2, PRG4 with a NS-Forest FBeta value of 0.89s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/5b0fa9ca-41e2-4cbf-8150-5eacead7b1e2", "meta": { @@ -786688,29 +786757,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/5db33b12-251d-43b4-a213-cffa789d0f16", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001111" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_2" - } - ], - "comments": [ - "A L5 IT_2 in the Human Brain has the gene markers NPY2R, PCED1B, TLL1, RORB with a NS-Forest FBeta value of 0.5685240963855422s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/5f095659-97ae-43b5-b5f9-66b4eb0f5262", "meta": { @@ -786872,29 +786918,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/624c82b4-3a2f-4807-92ef-c886ae5d7122", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001113" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_4" - } - ], - "comments": [ - "A L5 IT_4 in the Human Brain has the gene markers C22orf34, LDLRAD3, RORB, KCNK2 with a NS-Forest FBeta value of 0.44211195928753183s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/6284d436-fd2f-4bdf-810b-d2e1ade07747", "meta": { @@ -786942,12 +786965,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/654eb5a5-939b-40a4-be4c-edb5611a0e94", + "id": "http://example.org/65933b13-741b-4c8a-9b8f-95ccaf50699c", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001114" + "val": "http://purl.obolibrary.org/obo/CLM_1000029" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -786955,11 +786978,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_5" + "val": "Hematopoietic stem cells" } ], "comments": [ - "A L5 IT_5 in the Human Brain has the gene markers NPNT, CA10, RORB, KCNK2 with a NS-Forest FBeta value of 0.5813953488372092s." + "A Hematopoietic stem cells in the Human Lung has the gene markers CYTL1, FAM30A with a NS-Forest FBeta value of 0.66s." ] }, "type": "INDIVIDUAL" @@ -787102,6 +787125,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/68a3748e-03ab-464f-84ad-f4c2b3c733b4", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000051" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "SM activated stress response" + } + ], + "comments": [ + "A SM activated stress response in the Human Lung has the gene markers RERGL, C11orf96 with a NS-Forest FBeta value of 0.58s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/68e218e7-b1a6-4533-a239-5355ea2875c4", "meta": { @@ -787172,12 +787218,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/6acb9255-58fe-4869-9779-234c1447cd09", + "id": "http://example.org/6a0dd9b9-02d1-4911-8205-a82cd058279e", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001089" + "val": "http://purl.obolibrary.org/obo/CLM_1000054" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787185,22 +787231,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Astro_4" + "val": "SMG serous (bronchial)" } ], "comments": [ - "A Astro_4 in the Human Brain has the gene markers PPP1R3C, ETNPPL, ID4, OBI1-AS1 with a NS-Forest FBeta value of 0.47279792746113986s." + "A SMG serous (bronchial) in the Human Lung has the gene markers PRR4, C6orf58 with a NS-Forest FBeta value of 0.75s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6cae250e-47da-4f3c-bcf5-0680109a77bc", + "id": "http://example.org/6acb9255-58fe-4869-9779-234c1447cd09", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001155" + "val": "http://purl.obolibrary.org/obo/CLM_1001089" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787208,22 +787254,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Pvalb_3" + "val": "Astro_4" } ], "comments": [ - "A Pvalb_3 in the Human Brain has the gene markers TAFA4, SYT10, ANOS1, HTR4 with a NS-Forest FBeta value of 0.635593220338983s." + "A Astro_4 in the Human Brain has the gene markers PPP1R3C, ETNPPL, ID4, OBI1-AS1 with a NS-Forest FBeta value of 0.47279792746113986s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6d289c03-0476-40c6-9740-f38ce36ee205", + "id": "http://example.org/6bcac2e9-ca94-4342-b2ba-f169a06ce6d2", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001201" + "val": "http://purl.obolibrary.org/obo/CLM_1000028" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787231,22 +787277,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_31" + "val": "Goblet (subsegmental)" } ], "comments": [ - "A Sst_31 in the Human Brain has the gene markers FRZB, CBLN4, RGS5_ENSG00000143248, ARHGAP10 with a NS-Forest FBeta value of 0.4743083003952569s." + "A Goblet (subsegmental) in the Human Lung has the gene markers MTRNR2L8, SCGB1A1 with a NS-Forest FBeta value of 0.61s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6dafb4f0-cb9b-40ee-8107-bfd1db796c10", + "id": "http://example.org/6cae250e-47da-4f3c-bcf5-0680109a77bc", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001237" + "val": "http://purl.obolibrary.org/obo/CLM_1001155" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787254,22 +787300,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_28" + "val": "Pvalb_3" } ], "comments": [ - "A Vip_28 in the Human Brain has the gene markers HTR2C, DCN with a NS-Forest FBeta value of 0.3763440860215054s." + "A Pvalb_3 in the Human Brain has the gene markers TAFA4, SYT10, ANOS1, HTR4 with a NS-Forest FBeta value of 0.635593220338983s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6e37c6a2-5c93-40c1-b8ce-094f7e3a5847", + "id": "http://example.org/6d289c03-0476-40c6-9740-f38ce36ee205", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000070" + "val": "http://purl.obolibrary.org/obo/CLM_1001201" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787277,22 +787323,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 CT" + "val": "Sst_31" } ], "comments": [ - "A L6 CT in the Human Brain has the gene markers SEMA5B, ADAMTSL1, SULF1 with a NS-Forest FBeta value of 0.631898455s." + "A Sst_31 in the Human Brain has the gene markers FRZB, CBLN4, RGS5_ENSG00000143248, ARHGAP10 with a NS-Forest FBeta value of 0.4743083003952569s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6e998bae-8655-4876-830f-7f6004f62735", + "id": "http://example.org/6dafb4f0-cb9b-40ee-8107-bfd1db796c10", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001148" + "val": "http://purl.obolibrary.org/obo/CLM_1001237" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787300,22 +787346,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Oligo_4" + "val": "Vip_28" } ], "comments": [ - "A Oligo_4 in the Human Brain has the gene markers OPALIN, TRIM59, CERCAM with a NS-Forest FBeta value of 0.5434782608695652s." + "A Vip_28 in the Human Brain has the gene markers HTR2C, DCN with a NS-Forest FBeta value of 0.3763440860215054s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/6faa9fa7-e27d-4757-a275-07792ff7d143", + "id": "http://example.org/6e37c6a2-5c93-40c1-b8ce-094f7e3a5847", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001176" + "val": "http://purl.obolibrary.org/obo/CLM_1000070" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787323,22 +787369,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_6" + "val": "L6 CT" } ], "comments": [ - "A Sst_6 in the Human Brain has the gene markers DPP4, MAFB with a NS-Forest FBeta value of 0.38520801232665647s." + "A L6 CT in the Human Brain has the gene markers SEMA5B, ADAMTSL1, SULF1 with a NS-Forest FBeta value of 0.631898455s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/701a1c10-768d-4d50-8586-b52df10a4978", + "id": "http://example.org/6e998bae-8655-4876-830f-7f6004f62735", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001171" + "val": "http://purl.obolibrary.org/obo/CLM_1001148" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787346,22 +787392,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_1" + "val": "Oligo_4" } ], "comments": [ - "A Sst_1 in the Human Brain has the gene markers NDST4, ANGPT1, EPB41L4A with a NS-Forest FBeta value of 0.5104166666666666s." + "A Oligo_4 in the Human Brain has the gene markers OPALIN, TRIM59, CERCAM with a NS-Forest FBeta value of 0.5434782608695652s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/70921b59-1c01-47bc-a0a4-693fa1836939", + "id": "http://example.org/6faa9fa7-e27d-4757-a275-07792ff7d143", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001184" + "val": "http://purl.obolibrary.org/obo/CLM_1001176" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787369,22 +787415,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_14" + "val": "Sst_6" } ], "comments": [ - "A Sst_14 in the Human Brain has the gene markers SLC9A2, ROR1, EYA4 with a NS-Forest FBeta value of 0.46314741035856577s." + "A Sst_6 in the Human Brain has the gene markers DPP4, MAFB with a NS-Forest FBeta value of 0.38520801232665647s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/70c087c4-2b8d-4a4f-8b78-f096c536dad6", + "id": "http://example.org/701a1c10-768d-4d50-8586-b52df10a4978", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001103" + "val": "http://purl.obolibrary.org/obo/CLM_1001171" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787392,22 +787438,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_4" + "val": "Sst_1" } ], "comments": [ - "A L4 IT_4 in the Human Brain has the gene markers STAC, KCNH8, SYT2 with a NS-Forest FBeta value of 0.6526243093922651s." + "A Sst_1 in the Human Brain has the gene markers NDST4, ANGPT1, EPB41L4A with a NS-Forest FBeta value of 0.5104166666666666s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/70cec8cd-a13b-4cd5-8cf5-4d09158618ea", + "id": "http://example.org/70921b59-1c01-47bc-a0a4-693fa1836939", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001097" + "val": "http://purl.obolibrary.org/obo/CLM_1001184" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787415,11 +787461,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_4" + "val": "Sst_14" } ], "comments": [ - "A L2/3 IT_4 in the Human Brain has the gene markers TPBG, FAP, ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.6337047353760445s." + "A Sst_14 in the Human Brain has the gene markers SLC9A2, ROR1, EYA4 with a NS-Forest FBeta value of 0.46314741035856577s." ] }, "type": "INDIVIDUAL" @@ -787608,6 +787654,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/75219c79-070e-4db7-9d97-3b66dfba075d", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000046" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Peribronchial fibroblasts" + } + ], + "comments": [ + "A Peribronchial fibroblasts in the Human Lung has the gene markers DPT, APOD with a NS-Forest FBeta value of 0.58s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/75a87b58-7db5-4cc1-8dcb-144afd9d4b85", "meta": { @@ -787654,6 +787723,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/761ac72c-caed-4bd9-aec7-275e9f6ca152", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000011" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "B cells" + } + ], + "comments": [ + "A B cells in the Human Lung has the gene markers MS4A1, CD79A with a NS-Forest FBeta value of 0.86s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/76fc7b4b-3f50-45ef-b810-fd6d7e1801ab", "meta": { @@ -787769,6 +787861,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/7a54700f-f9aa-424f-af3d-75fcccb4309e", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000052" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "SMG duct" + } + ], + "comments": [ + "A SMG duct in the Human Lung has the gene markers GLYATL2, DMBT1 with a NS-Forest FBeta value of 0.46s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/7cc86d0d-56c1-4d77-8b57-34792b97cc0f", "meta": { @@ -787793,12 +787908,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/7dd2b3b4-7581-4db7-812b-03a1aea15839", + "id": "http://example.org/7ce33e68-4880-42a0-9cd3-e14ae536c590", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000071" + "val": "http://purl.obolibrary.org/obo/CLM_1000030" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787806,22 +787921,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT" + "val": "Hillock-like" } ], "comments": [ - "A L6 IT in the Human Brain has the gene markers LINC00507, THEMIS with a NS-Forest FBeta value of 0.641695703s." + "A Hillock-like in the Human Lung has the gene markers KRT14, KRT6A with a NS-Forest FBeta value of 0.66s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/7de6d945-9194-46fd-bcc7-f27792fc9ced", + "id": "http://example.org/7f19c09a-3c32-4642-aef9-f213e031e0fd", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001099" + "val": "http://purl.obolibrary.org/obo/CLM_1000048" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787829,11 +787944,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_6" + "val": "Plasma cells" } ], "comments": [ - "A L2/3 IT_6 in the Human Brain has the gene markers LINC00507, ADAMTS3, LY86-AS1 with a NS-Forest FBeta value of 0.5509868421052632s." + "A Plasma cells in the Human Lung has the gene markers JCHAIN with a NS-Forest FBeta value of 0.91s." ] }, "type": "INDIVIDUAL" @@ -787885,12 +788000,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/82711ec2-43f3-4894-a00c-b8d17826bc81", + "id": "http://example.org/81a13212-6bc5-419e-9871-1592d73df781", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001215" + "val": "http://purl.obolibrary.org/obo/CLM_1000056" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787898,22 +788013,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_6" + "val": "Smooth muscle" } ], "comments": [ - "A Vip_6 in the Human Brain has the gene markers SMOC1, IQGAP2, PARD3B with a NS-Forest FBeta value of 0.5082179930795848s." + "A Smooth muscle in the Human Lung has the gene markers ACTA2, TAGLN with a NS-Forest FBeta value of 0.69s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/82ac6dd7-1d50-43f4-b058-a83028ba41c7", + "id": "http://example.org/81de57dc-65f5-4014-a757-432a74d25c58", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001212" + "val": "http://purl.obolibrary.org/obo/CLM_1000016" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787921,22 +788036,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_3" + "val": "Club (nasal)" } ], "comments": [ - "A Vip_3 in the Human Brain has the gene markers HPSE2, TRPC6, VIP with a NS-Forest FBeta value of 0.40249999999999997s." + "A Club (nasal) in the Human Lung has the gene markers TFCP2L1, PSCA with a NS-Forest FBeta value of 0.43s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/83088ff0-4f05-4506-9f89-476f36907eee", + "id": "http://example.org/82711ec2-43f3-4894-a00c-b8d17826bc81", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001173" + "val": "http://purl.obolibrary.org/obo/CLM_1001215" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787944,22 +788059,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_3" + "val": "Vip_6" } ], "comments": [ - "A Sst_3 in the Human Brain has the gene markers TCF7L1, FBXL7, CBLN2 with a NS-Forest FBeta value of 0.6936997319034853s." + "A Vip_6 in the Human Brain has the gene markers SMOC1, IQGAP2, PARD3B with a NS-Forest FBeta value of 0.5082179930795848s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/865d72a0-fa38-483d-bf02-7fb9bffa6300", + "id": "http://example.org/82ab9563-45ec-49e1-a862-75f58c66c005", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001098" + "val": "http://purl.obolibrary.org/obo/CLM_1000040" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787967,22 +788082,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_5" + "val": "Multiciliated (nasal)" } ], "comments": [ - "A L2/3 IT_5 in the Human Brain has the gene markers GPX3, ADCYAP1, RMST with a NS-Forest FBeta value of 0.5061141304347826s." + "A Multiciliated (nasal) in the Human Lung has the gene markers FMO3, MRLN, OMG with a NS-Forest FBeta value of 0.59s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/869ac50b-cafc-4d75-88ad-398595b34d83", + "id": "http://example.org/82ac6dd7-1d50-43f4-b058-a83028ba41c7", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001086" + "val": "http://purl.obolibrary.org/obo/CLM_1001212" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -787990,22 +788105,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Astro_1" + "val": "Vip_3" } ], "comments": [ - "A Astro_1 in the Human Brain has the gene markers SLC1A3, HPSE2 with a NS-Forest FBeta value of 0.6796875s." + "A Vip_3 in the Human Brain has the gene markers HPSE2, TRPC6, VIP with a NS-Forest FBeta value of 0.40249999999999997s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/872bc20b-c59d-40eb-a258-f2e016896387", + "id": "http://example.org/83088ff0-4f05-4506-9f89-476f36907eee", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000070" + "val": "http://purl.obolibrary.org/obo/CLM_1001173" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -788013,22 +788128,45 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 CT" + "val": "Sst_3" } ], "comments": [ - "A L6 CT in the Human Brain has the gene markers SEMA5B, ADAMTSL1, SULF1 with a NS-Forest FBeta value of 0.631898455s." + "A Sst_3 in the Human Brain has the gene markers TCF7L1, FBXL7, CBLN2 with a NS-Forest FBeta value of 0.6936997319034853s." + ] + }, + "type": "INDIVIDUAL" + }, + { + "id": "http://example.org/869ac50b-cafc-4d75-88ad-398595b34d83", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1001086" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Astro_1" + } + ], + "comments": [ + "A Astro_1 in the Human Brain has the gene markers SLC1A3, HPSE2 with a NS-Forest FBeta value of 0.6796875s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/874a5685-1362-4a05-aed6-45d54c44abe5", + "id": "http://example.org/872bc20b-c59d-40eb-a258-f2e016896387", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001126" + "val": "http://purl.obolibrary.org/obo/CLM_1000070" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -788036,11 +788174,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3_2" + "val": "L6 CT" } ], "comments": [ - "A L6 IT Car3_2 in the Human Brain has the gene markers SMYD1, ITGB8 with a NS-Forest FBeta value of 0.6594036697247707s." + "A L6 CT in the Human Brain has the gene markers SEMA5B, ADAMTSL1, SULF1 with a NS-Forest FBeta value of 0.631898455s." ] }, "type": "INDIVIDUAL" @@ -788253,12 +788391,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/8d2404cb-bbdb-4808-8d57-dc74b893f303", + "id": "http://example.org/8cef1166-94a5-4ef6-b92a-0eb75a1078c7", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001115" + "val": "http://purl.obolibrary.org/obo/CLM_1000047" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -788266,11 +788404,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_6" + "val": "Pericytes" } ], "comments": [ - "A L5 IT_6 in the Human Brain has the gene markers NPFFR2, SULF2, RORB with a NS-Forest FBeta value of 0.6619822485207101s." + "A Pericytes in the Human Lung has the gene markers HIGD1B, KCNK3 with a NS-Forest FBeta value of 0.84s." ] }, "type": "INDIVIDUAL" @@ -788298,6 +788436,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/8deff728-c5c4-4fc3-bad3-8611f3fde461", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000055" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "SMG serous (nasal)" + } + ], + "comments": [ + "A SMG serous (nasal) in the Human Lung has the gene markers STATH with a NS-Forest FBeta value of 0.92s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/8e85bfaa-5338-4ecf-b79e-5c3410ba8872", "meta": { @@ -788528,29 +788689,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/948b04d6-ef7c-4bf1-9ee7-d8265a0c47cb", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000068" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT" - } - ], - "comments": [ - "A L5 IT in the Human Brain has the gene markers ARSJ, RORB, KCNK2 with a NS-Forest FBeta value of 0.764261336s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/94cf90e9-faf1-4b67-b645-ed77a61b26c2", "meta": { @@ -788666,6 +788804,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/95a98198-08d8-4800-8eaf-afc4a0475cae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000009" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "AT2" + } + ], + "comments": [ + "A AT2 in the Human Lung has the gene markers SFTPA1 with a NS-Forest FBeta value of 0.95s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/9622e78f-f55c-410c-8cee-669bc8bad04b", "meta": { @@ -788689,6 +788850,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/97082fa7-8eeb-4bdb-9b3a-d50e693ee1dc", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000007" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "AT0" + } + ], + "comments": [ + "A AT0 in the Human Lung has the gene markers HSD17B6, XIST, SCGB3A2 with a NS-Forest FBeta value of 0.28s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/97275027-975c-4154-97b5-8c3f82e62869", "meta": { @@ -789034,6 +789218,75 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/9d938e9f-152e-46f6-b2a4-b60c9be20e56", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000044" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "NK cells" + } + ], + "comments": [ + "A NK cells in the Human Lung has the gene markers KLRF1, PRF1 with a NS-Forest FBeta value of 0.79s." + ] + }, + "type": "INDIVIDUAL" + }, + { + "id": "http://example.org/9dd926b6-0891-4a8c-b081-d76501f8f15d", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000042" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Myofibroblasts" + } + ], + "comments": [ + "A Myofibroblasts in the Human Lung has the gene markers ASPN, DKK3, BCHE with a NS-Forest FBeta value of 0.48s." + ] + }, + "type": "INDIVIDUAL" + }, + { + "id": "http://example.org/9e45c8ba-6ade-41d4-922e-7f710c99ce8a", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000019" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "DC2" + } + ], + "comments": [ + "A DC2 in the Human Lung has the gene markers CLEC10A, HLA-DQA1 with a NS-Forest FBeta value of 0.53s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/9e70bc7e-430d-4f13-9ef5-a227c640d592", "meta": { @@ -789058,12 +789311,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/9f99963b-363e-4131-8600-29cd31caf96c", + "id": "http://example.org/9fe63e4a-5acd-424e-9529-dbfacc4ccae0", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001101" + "val": "http://purl.obolibrary.org/obo/CLM_1000005" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789071,11 +789324,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_2" + "val": "Alveolar Mph MT-positive" } ], "comments": [ - "A L4 IT_2 in the Human Brain has the gene markers C6orf141, ST8SIA4 with a NS-Forest FBeta value of 0.7738095238095238s." + "A Alveolar Mph MT-positive in the Human Lung has the gene markers HMOX1, HPGD with a NS-Forest FBeta value of 0.41s." ] }, "type": "INDIVIDUAL" @@ -789195,6 +789448,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/a438c795-deaf-4c88-b32e-06ad4cc6b46d", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000014" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "CD8 T cells" + } + ], + "comments": [ + "A CD8 T cells in the Human Lung has the gene markers CCL5, CD3D with a NS-Forest FBeta value of 0.76s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/a4ce7c05-0645-46d9-b686-65498c887ff8", "meta": { @@ -789265,12 +789541,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/a7666632-cfdc-404c-b4d4-f9f5550585a1", + "id": "http://example.org/a6c1f66f-4dec-49f9-8dd8-1163130ffa3c", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001229" + "val": "http://purl.obolibrary.org/obo/CLM_1000006" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789278,22 +789554,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_20" + "val": "Alveolar Mph proliferating" } ], "comments": [ - "A Vip_20 in the Human Brain has the gene markers CBLN1, VIPR2, PPP1R1C, VIP with a NS-Forest FBeta value of 0.3658536585365853s." + "A Alveolar Mph proliferating in the Human Lung has the gene markers PCLAF, RRM2, UBE2C, NUSAP1 with a NS-Forest FBeta value of 0.26s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/a7e0fbd8-93cd-4507-8f63-820721bbc635", + "id": "http://example.org/a7666632-cfdc-404c-b4d4-f9f5550585a1", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001095" + "val": "http://purl.obolibrary.org/obo/CLM_1001229" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789301,11 +789577,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_2" + "val": "Vip_20" } ], "comments": [ - "A L2/3 IT_2 in the Human Brain has the gene markers THSD4, TESPA1, TRPC3 with a NS-Forest FBeta value of 0.6621140142517815s." + "A Vip_20 in the Human Brain has the gene markers CBLN1, VIPR2, PPP1R1C, VIP with a NS-Forest FBeta value of 0.3658536585365853s." ] }, "type": "INDIVIDUAL" @@ -789402,6 +789678,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/a91c9cfc-1d76-4d58-9f33-d7e213bc2602", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000027" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Goblet (nasal)" + } + ], + "comments": [ + "A Goblet (nasal) in the Human Lung has the gene markers LYPD2, MUC5AC with a NS-Forest FBeta value of 0.81s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/a9b19d8f-4433-4605-b2e1-17a2e02eecb6", "meta": { @@ -789425,6 +789724,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/a9e162c0-0ee4-4e76-a6c2-6ee7ce723407", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000041" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Multiciliated (non-nasal)" + } + ], + "comments": [ + "A Multiciliated (non-nasal) in the Human Lung has the gene markers C1orf194, MS4A8 with a NS-Forest FBeta value of 0.86s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/a9fff2bf-8e91-491b-9071-b9cbcf161ae3", "meta": { @@ -789495,12 +789817,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/ad7851ab-7e7d-4f83-a3a4-525e32543915", + "id": "http://example.org/ad3ddf07-7c56-4ac2-97ef-37d4c1eeead8", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001169" + "val": "http://purl.obolibrary.org/obo/CLM_1000058" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789508,22 +789830,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sncg_8" + "val": "Subpleural fibroblasts" } ], "comments": [ - "A Sncg_8 in the Human Brain has the gene markers NDST4, HTR2C, PRELID2 with a NS-Forest FBeta value of 0.49476135040745045s." + "A Subpleural fibroblasts in the Human Lung has the gene markers WT1, CXCL12 with a NS-Forest FBeta value of 0.60s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/aebf6e1e-7478-4304-b9dc-672beab7b4d5", + "id": "http://example.org/ad7851ab-7e7d-4f83-a3a4-525e32543915", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001217" + "val": "http://purl.obolibrary.org/obo/CLM_1001169" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789531,22 +789853,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_8" + "val": "Sncg_8" } ], "comments": [ - "A Vip_8 in the Human Brain has the gene markers VWDE, WSCD1, DACH2 with a NS-Forest FBeta value of 0.3183962264150943s." + "A Sncg_8 in the Human Brain has the gene markers NDST4, HTR2C, PRELID2 with a NS-Forest FBeta value of 0.49476135040745045s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/af030ed6-2635-4e00-a762-0c9b51eb4f83", + "id": "http://example.org/adfe9ec0-e162-49f1-9baa-e3a64d2515ce", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001151" + "val": "http://purl.obolibrary.org/obo/CLM_1000036" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789554,22 +789876,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Pax6_3" + "val": "Mast cells" } ], "comments": [ - "A Pax6_3 in the Human Brain has the gene markers PBX3, PDLIM5, FBN2 with a NS-Forest FBeta value of 0.7090163934426228s." + "A Mast cells in the Human Lung has the gene markers TPSAB1 with a NS-Forest FBeta value of 0.96s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b09fb3ba-53d1-4ed7-8331-7bdfeb583a8a", + "id": "http://example.org/aebf6e1e-7478-4304-b9dc-672beab7b4d5", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001180" + "val": "http://purl.obolibrary.org/obo/CLM_1001217" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789577,22 +789899,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_10" + "val": "Vip_8" } ], "comments": [ - "A Sst_10 in the Human Brain has the gene markers HPSE2, EYA4, SST, PLCH1 with a NS-Forest FBeta value of 0.3615384615384615s." + "A Vip_8 in the Human Brain has the gene markers VWDE, WSCD1, DACH2 with a NS-Forest FBeta value of 0.3183962264150943s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b148344f-8287-429d-a834-5e76ccda5458", + "id": "http://example.org/af030ed6-2635-4e00-a762-0c9b51eb4f83", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001211" + "val": "http://purl.obolibrary.org/obo/CLM_1001151" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789600,22 +789922,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_2" + "val": "Pax6_3" } ], "comments": [ - "A Vip_2 in the Human Brain has the gene markers IGFBP5, SLC22A3, PTGDS, VIP with a NS-Forest FBeta value of 0.4741379310344827s." + "A Pax6_3 in the Human Brain has the gene markers PBX3, PDLIM5, FBN2 with a NS-Forest FBeta value of 0.7090163934426228s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b1e21fc9-3b33-4e7a-a48c-975522c51a6a", + "id": "http://example.org/b09fb3ba-53d1-4ed7-8331-7bdfeb583a8a", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001139" + "val": "http://purl.obolibrary.org/obo/CLM_1001180" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789623,22 +789945,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Lamp5_4" + "val": "Sst_10" } ], "comments": [ - "A Lamp5_4 in the Human Brain has the gene markers ROR2, TRPC3, FBXL7, LINC00298 with a NS-Forest FBeta value of 0.40425531914893614s." + "A Sst_10 in the Human Brain has the gene markers HPSE2, EYA4, SST, PLCH1 with a NS-Forest FBeta value of 0.3615384615384615s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b382c5b7-f32c-4c19-8c0a-7af70de2830b", + "id": "http://example.org/b148344f-8287-429d-a834-5e76ccda5458", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001128" + "val": "http://purl.obolibrary.org/obo/CLM_1001211" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789646,22 +789968,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT_2" + "val": "Vip_2" } ], "comments": [ - "A L6 IT_2 in the Human Brain has the gene markers LINC00343, ADAMTS3, PXDN with a NS-Forest FBeta value of 0.5810546875s." + "A Vip_2 in the Human Brain has the gene markers IGFBP5, SLC22A3, PTGDS, VIP with a NS-Forest FBeta value of 0.4741379310344827s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b3bd2a48-2691-4067-8bd4-804ece0fac2a", + "id": "http://example.org/b1e21fc9-3b33-4e7a-a48c-975522c51a6a", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001102" + "val": "http://purl.obolibrary.org/obo/CLM_1001139" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789669,22 +789991,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_3" + "val": "Lamp5_4" } ], "comments": [ - "A L4 IT_3 in the Human Brain has the gene markers TMEM215, KCNH8, RORB with a NS-Forest FBeta value of 0.6151315789473684s." + "A Lamp5_4 in the Human Brain has the gene markers ROR2, TRPC3, FBXL7, LINC00298 with a NS-Forest FBeta value of 0.40425531914893614s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/b460b5db-8709-4ab4-b1b2-09cd49e40c96", + "id": "http://example.org/b449f1f9-3b0a-4c96-8a66-1465e499a850", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001115" + "val": "http://purl.obolibrary.org/obo/CLM_1000010" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789692,11 +790014,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_6" + "val": "AT2 proliferating" } ], "comments": [ - "A L5 IT_6 in the Human Brain has the gene markers NPFFR2, SULF2, RORB with a NS-Forest FBeta value of 0.6619822485207101s." + "A AT2 proliferating in the Human Lung has the gene markers PEG10, PRC1, TOP2A with a NS-Forest FBeta value of 0.61s." ] }, "type": "INDIVIDUAL" @@ -789840,12 +790162,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/bacb2560-b0aa-4a07-8285-28b82a874184", + "id": "http://example.org/ba99e73c-b2e6-4cba-ac66-43258571fd4e", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001227" + "val": "http://purl.obolibrary.org/obo/CLM_1000035" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789853,22 +790175,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Vip_18" + "val": "Lymphatic EC proliferating" } ], "comments": [ - "A Vip_18 in the Human Brain has the gene markers NOX4, RXRG, NDST4 with a NS-Forest FBeta value of 0.38953488372093026s." + "A Lymphatic EC proliferating in the Human Lung has the gene markers CENPF, CCL21 with a NS-Forest FBeta value of 0.73s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/bc3fce46-6bfa-4890-bc3c-32cce12c67b3", + "id": "http://example.org/bacb2560-b0aa-4a07-8285-28b82a874184", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001113" + "val": "http://purl.obolibrary.org/obo/CLM_1001227" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -789876,11 +790198,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_4" + "val": "Vip_18" } ], "comments": [ - "A L5 IT_4 in the Human Brain has the gene markers C22orf34, LDLRAD3, RORB, KCNK2 with a NS-Forest FBeta value of 0.44211195928753183s." + "A Vip_18 in the Human Brain has the gene markers NOX4, RXRG, NDST4 with a NS-Forest FBeta value of 0.38953488372093026s." ] }, "type": "INDIVIDUAL" @@ -789908,29 +790230,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/be35ae6e-9a07-4f44-a413-0471570cdcc9", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001127" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT_1" - } - ], - "comments": [ - "A L6 IT_1 in the Human Brain has the gene markers THEMIS, HOPX, MKX with a NS-Forest FBeta value of 0.6710122699386504s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/bf7c5bd9-847a-4d01-b0d5-7c184e16cb00", "meta": { @@ -790023,29 +790322,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/c1b3cbbb-54ea-4524-9182-f0058e0c46de", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000066" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT" - } - ], - "comments": [ - "A L4 IT in the Human Brain has the gene markers RORB, ST8SIA4 with a NS-Forest FBeta value of 0.720108696s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/c1c0cae1-5730-48ec-8c95-3358bdaa539d", "meta": { @@ -790208,12 +790484,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/c861355b-5f23-476b-9f4a-e5ba7d8d8f63", + "id": "http://example.org/c6008f39-aef8-4e05-8d50-06881c2b7c5e", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001125" + "val": "http://purl.obolibrary.org/obo/CLM_1000021" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790221,11 +790497,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3_1" + "val": "EC aerocyte capillary" } ], "comments": [ - "A L6 IT Car3_1 in the Human Brain has the gene markers LINC00348 with a NS-Forest FBeta value of 0.665s." + "A EC aerocyte capillary in the Human Lung has the gene markers EDNRB with a NS-Forest FBeta value of 0.83s." ] }, "type": "INDIVIDUAL" @@ -790254,12 +790530,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/c91fa0d7-21c1-4dc2-9a75-b7ec7cd3735a", + "id": "http://example.org/c9229e9e-646b-4edf-9a40-3c1974fa7466", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001111" + "val": "http://purl.obolibrary.org/obo/CLM_1001190" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790267,22 +790543,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_2" + "val": "Sst_20" } ], "comments": [ - "A L5 IT_2 in the Human Brain has the gene markers NPY2R, PCED1B, TLL1, RORB with a NS-Forest FBeta value of 0.5685240963855422s." + "A Sst_20 in the Human Brain has the gene markers QRFPR, HGF, RELN with a NS-Forest FBeta value of 0.4671717171717172s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/c9229e9e-646b-4edf-9a40-3c1974fa7466", + "id": "http://example.org/ca069a16-f319-4a69-9f0b-68cbd852794d", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001190" + "val": "http://purl.obolibrary.org/obo/CLM_1000034" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790290,11 +790566,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_20" + "val": "Lymphatic EC mature" } ], "comments": [ - "A Sst_20 in the Human Brain has the gene markers QRFPR, HGF, RELN with a NS-Forest FBeta value of 0.4671717171717172s." + "A Lymphatic EC mature in the Human Lung has the gene markers CCL21 with a NS-Forest FBeta value of 0.88s." ] }, "type": "INDIVIDUAL" @@ -790392,12 +790668,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/cd8458ae-2b00-4c9d-b037-15eb3a7d102a", + "id": "http://example.org/cc78ad3d-4993-431a-a874-ecc3dbe1e6b5", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001162" + "val": "http://purl.obolibrary.org/obo/CLM_1000003" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790405,22 +790681,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sncg_1" + "val": "Alveolar macrophages" } ], "comments": [ - "A Sncg_1 in the Human Brain has the gene markers UNC5B, TAFA4, THSD7B with a NS-Forest FBeta value of 0.5883947939262474s." + "A Alveolar macrophages in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.80s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/d0e8eb57-c582-4eae-85b5-7358e53b32e4", + "id": "http://example.org/cd7b17d6-26fe-4a1c-a79e-30f921ed7d1c", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001097" + "val": "http://purl.obolibrary.org/obo/CLM_1000033" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790428,11 +790704,34 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_4" + "val": "Lymphatic EC differentiating" } ], "comments": [ - "A L2/3 IT_4 in the Human Brain has the gene markers TPBG, FAP, ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.6337047353760445s." + "A Lymphatic EC differentiating in the Human Lung has the gene markers SEMA3D, KALRN with a NS-Forest FBeta value of 0.42s." + ] + }, + "type": "INDIVIDUAL" + }, + { + "id": "http://example.org/cd8458ae-2b00-4c9d-b037-15eb3a7d102a", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1001162" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Sncg_1" + } + ], + "comments": [ + "A Sncg_1 in the Human Brain has the gene markers UNC5B, TAFA4, THSD7B with a NS-Forest FBeta value of 0.5883947939262474s." ] }, "type": "INDIVIDUAL" @@ -790484,12 +790783,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/d2bec2e1-a0fe-4734-969b-68637063bbbe", + "id": "http://example.org/d33e232a-c423-42af-a211-5ae4b1514a3f", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001096" + "val": "http://purl.obolibrary.org/obo/CLM_1001194" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790497,22 +790796,22 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_3" + "val": "Sst_24" } ], "comments": [ - "A L2/3 IT_3 in the Human Brain has the gene markers COL27A1, ONECUT2, MOXD1, BMPR1B with a NS-Forest FBeta value of 0.675117924528302s." + "A Sst_24 in the Human Brain has the gene markers NDST4, BMP6, MYO5B with a NS-Forest FBeta value of 0.37790697674418605s." ] }, "type": "INDIVIDUAL" }, { - "id": "http://example.org/d33e232a-c423-42af-a211-5ae4b1514a3f", + "id": "http://example.org/d35e9a00-11fb-4526-9c1b-1370ef1c5882", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001194" + "val": "http://purl.obolibrary.org/obo/CLM_1000020" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790520,11 +790819,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "Sst_24" + "val": "Deuterosomal" } ], "comments": [ - "A Sst_24 in the Human Brain has the gene markers NDST4, BMP6, MYO5B with a NS-Forest FBeta value of 0.37790697674418605s." + "A Deuterosomal in the Human Lung has the gene markers CDC20B, CEP78 with a NS-Forest FBeta value of 0.71s." ] }, "type": "INDIVIDUAL" @@ -790736,29 +791035,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/da1f1295-c108-4e0c-8628-f329b721e718", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001098" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT_5" - } - ], - "comments": [ - "A L2/3 IT_5 in the Human Brain has the gene markers GPX3, ADCYAP1, RMST with a NS-Forest FBeta value of 0.5061141304347826s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/da6215c4-7a9c-4e65-87af-7c7742209017", "meta": { @@ -790805,29 +791081,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/dbea52cb-6e5b-4582-b0a1-be11a22fbdbc", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000065" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT" - } - ], - "comments": [ - "A L2/3 IT in the Human Brain has the gene markers ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.670149932s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/dc0eae21-4900-4745-a48e-f2d173aa4ba2", "meta": { @@ -790875,12 +791128,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/dd598065-7064-4bc2-b0e8-0fc231b9b397", + "id": "http://example.org/df6d8651-e642-45fa-9fa9-eeb9ea209de1", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001112" + "val": "http://purl.obolibrary.org/obo/CLM_1000009" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -790888,11 +791141,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_3" + "val": "AT2" } ], "comments": [ - "A L5 IT_3 in the Human Brain has the gene markers RPRM, HPCA, RORB with a NS-Forest FBeta value of 0.49479166666666663s." + "A AT2 in the Human Lung has the gene markers SFTPA1 with a NS-Forest FBeta value of 0.95s." ] }, "type": "INDIVIDUAL" @@ -790989,6 +791242,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/e208050d-fe54-4bff-875b-43f77d17bf51", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000017" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Club (non-nasal)" + } + ], + "comments": [ + "A Club (non-nasal) in the Human Lung has the gene markers CYP2F1, SCGB1A1 with a NS-Forest FBeta value of 0.68s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/e3576779-5afa-46ee-8a6c-ca581aaa0c7d", "meta": { @@ -791059,12 +791335,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/e499c819-9527-4d49-96b1-638da342a9ac", + "id": "http://example.org/e4c9cbe4-7822-4d73-ae81-bdb9ce5a47b8", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000065" + "val": "http://purl.obolibrary.org/obo/CLM_1000039" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -791072,11 +791348,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L2/3 IT" + "val": "Monocyte-derived Mph" } ], "comments": [ - "A L2/3 IT in the Human Brain has the gene markers ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.670149932s." + "A Monocyte-derived Mph in the Human Lung has the gene markers C15orf48, CD68 with a NS-Forest FBeta value of 0.37s." ] }, "type": "INDIVIDUAL" @@ -791196,29 +791472,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/e810d277-abf0-4978-bcb1-99060c6698b3", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1000072" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT Car3" - } - ], - "comments": [ - "A L6 IT Car3 in the Human Brain has the gene markers SMYD1, THEMIS with a NS-Forest FBeta value of 0.877752028s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/e83996b8-3411-4196-90db-fb63059e393a", "meta": { @@ -791312,12 +791565,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/ea19611e-9214-45f8-aa82-40be4c9edd34", + "id": "http://example.org/e96f493f-a505-47d9-a68f-af359b4dc020", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001104" + "val": "http://purl.obolibrary.org/obo/CLM_1000024" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -791325,11 +791578,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_5" + "val": "EC venous pulmonary" } ], "comments": [ - "A L4 IT_5 in the Human Brain has the gene markers COL22A1, CMAHP with a NS-Forest FBeta value of 0.6576797385620915s." + "A EC venous pulmonary in the Human Lung has the gene markers ACKR1, SRPX with a NS-Forest FBeta value of 0.74s." ] }, "type": "INDIVIDUAL" @@ -791404,12 +791657,12 @@ "type": "INDIVIDUAL" }, { - "id": "http://example.org/ec18351e-d7ef-4b77-a5a0-9398fd8cfa4b", + "id": "http://example.org/ec4ae2f2-2216-44b7-aa0b-d0ee7fa12bca", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001114" + "val": "http://purl.obolibrary.org/obo/CLM_1000060" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002175", @@ -791417,34 +791670,11 @@ }, { "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_5" + "val": "T cells proliferating" } ], "comments": [ - "A L5 IT_5 in the Human Brain has the gene markers NPNT, CA10, RORB, KCNK2 with a NS-Forest FBeta value of 0.5813953488372092s." - ] - }, - "type": "INDIVIDUAL" - }, - { - "id": "http://example.org/ec1d2563-d8a5-40d5-9367-bf5fe668b019", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001128" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L6 IT_2" - } - ], - "comments": [ - "A L6 IT_2 in the Human Brain has the gene markers LINC00343, ADAMTS3, PXDN with a NS-Forest FBeta value of 0.5810546875s." + "A T cells proliferating in the Human Lung has the gene markers CD3G, MKI67, PCLAF, CD3E with a NS-Forest FBeta value of 0.71s." ] }, "type": "INDIVIDUAL" @@ -791472,29 +791702,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/ed4ab22d-72f8-46ba-97db-7bfc71b8a5a4", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001102" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L4 IT_3" - } - ], - "comments": [ - "A L4 IT_3 in the Human Brain has the gene markers TMEM215, KCNH8, RORB with a NS-Forest FBeta value of 0.6151315789473684s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/f07984d6-a208-4758-b07b-c09c35692989", "meta": { @@ -791633,29 +791840,6 @@ }, "type": "INDIVIDUAL" }, - { - "id": "http://example.org/f5fbd1fd-52bf-43d1-8aac-6a1f2af3b568", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/CLM_0010000", - "val": "http://purl.obolibrary.org/obo/CLM_1001110" - }, - { - "pred": "http://purl.obolibrary.org/obo/RO_0002175", - "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" - }, - { - "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", - "val": "L5 IT_1" - } - ], - "comments": [ - "A L5 IT_1 in the Human Brain has the gene markers CHST2, TLL1, RORB with a NS-Forest FBeta value of 0.6250000000000001s." - ] - }, - "type": "INDIVIDUAL" - }, { "id": "http://example.org/f64a9d59-af5e-4bb3-a4e7-53a5b535d7b5", "meta": { @@ -791886,6 +792070,29 @@ }, "type": "INDIVIDUAL" }, + { + "id": "http://example.org/fde22c9c-eeb9-4300-89dd-478c36471def", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/CLM_0010000", + "val": "http://purl.obolibrary.org/obo/CLM_1000061" + }, + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://www.w3.org/2004/02/skos/core#prefLabel", + "val": "Tuft" + } + ], + "comments": [ + "A Tuft in the Human Lung has the gene markers POU2F3, HOMER3, MYB with a NS-Forest FBeta value of 0.56s." + ] + }, + "type": "INDIVIDUAL" + }, { "id": "http://example.org/fe28676e-2945-42a1-80dc-af999e68c0ad", "meta": { @@ -792033,7 +792240,7 @@ } ], "comments": [ - "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." + "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792078,7 +792285,7 @@ } ], "comments": [ - "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." + "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792108,7 +792315,7 @@ } ], "comments": [ - "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." + "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792153,8 +792360,8 @@ } ], "comments": [ - "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", - "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." + "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", + "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792169,7 +792376,7 @@ } ], "comments": [ - "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." + "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792184,7 +792391,7 @@ } ], "comments": [ - "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." + "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792199,7 +792406,7 @@ } ], "comments": [ - "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." + "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792214,7 +792421,7 @@ } ], "comments": [ - "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." + "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792229,7 +792436,7 @@ } ], "comments": [ - "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." + "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792244,7 +792451,7 @@ } ], "comments": [ - "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." + "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792259,7 +792466,7 @@ } ], "comments": [ - "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." + "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792274,7 +792481,7 @@ } ], "comments": [ - "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." + "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792289,7 +792496,7 @@ } ], "comments": [ - "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." + "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792304,7 +792511,7 @@ } ], "comments": [ - "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." + "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792349,7 +792556,7 @@ } ], "comments": [ - "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." + "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792364,7 +792571,7 @@ } ], "comments": [ - "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." + "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792379,7 +792586,7 @@ } ], "comments": [ - "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." + "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792394,7 +792601,7 @@ } ], "comments": [ - "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." + "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792409,7 +792616,7 @@ } ], "comments": [ - "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." + "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792424,7 +792631,7 @@ } ], "comments": [ - "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." + "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792469,7 +792676,7 @@ } ], "comments": [ - "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." + "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792514,7 +792721,7 @@ } ], "comments": [ - "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." + "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792529,7 +792736,7 @@ } ], "comments": [ - "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." + "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792544,7 +792751,7 @@ } ], "comments": [ - "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." + "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792559,7 +792766,7 @@ } ], "comments": [ - "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." + "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ] }, "type": "CLASS" @@ -792574,7 +792781,7 @@ } ], "comments": [ - "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." + "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ] }, "type": "CLASS" diff --git a/clm-kg.obo b/clm-kg.obo index 5f23638..d77a0a1 100644 --- a/clm-kg.obo +++ b/clm-kg.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: clm/releases/2024-11-28/clm-kg.owl +data-version: clm/releases/2024-11-29/clm-kg.owl idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# @@ -9,7 +9,7 @@ property_value: dce:type IAO:8000001 property_value: dcterms:description "None" xsd:string property_value: dcterms:license https://creativecommons.org/licenses/unspecified property_value: dcterms:title "Cell Markers Ontology" xsd:string -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string [Term] id: CL:0000583 @@ -31,7 +31,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002075 -comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000061 ! has characterizing marker set NS forest marker set of brush cell of tracheobronchial tree (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -49,7 +49,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0002480 -comment: The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000027 ! has characterizing marker set NS forest marker set of nasal mucosa goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -61,7 +61,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0017000 -comment: The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000032 ! has characterizing marker set NS forest marker set of pulmonary ionocyte (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -79,69 +79,69 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000312 -comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} -comment: The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000026 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). relationship: RO:0015004 CLM:1000028 ! has characterizing marker set NS forest marker set of bronchial goblet cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023011 -comment: The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000074 ! has characterizing marker set NS forest marker set of lamp5 GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023015 -comment: The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000081 ! has characterizing marker set NS forest marker set of sncg GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023016 -comment: The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000085 ! has characterizing marker set NS forest marker set of VIP GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023017 -comment: The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000082 ! has characterizing marker set NS forest marker set of sst GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023018 -comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000080 ! has characterizing marker set NS forest marker set of pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023036 -comment: The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000063 ! has characterizing marker set NS forest marker set of chandelier pvalb GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023041 -comment: The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000067 ! has characterizing marker set NS forest marker set of L5 extratelencephalic projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023042 -comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000070 ! has characterizing marker set NS forest marker set of L6 corticothalamic-projecting glutamatergic cortical neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023046 -comment: The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000073 ! has characterizing marker set NS forest marker set of L6b glutamatergic neuron of the primary motor cortex (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023121 -comment: The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000083 ! has characterizing marker set NS forest marker set of sst chodl GABAergic cortical interneuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -159,37 +159,37 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030059 -comment: The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000065 ! has characterizing marker set NS forest marker set of L2/3 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030063 -comment: The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000066 ! has characterizing marker set NS forest marker set of L4 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030064 -comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000068 ! has characterizing marker set NS forest marker set of L5 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030065 -comment: The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000071 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030067 -comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000069 ! has characterizing marker set NS forest marker set of L5/6 near-projecting glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4030068 -comment: The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000072 ! has characterizing marker set NS forest marker set of L6 intratelencephalic projecting Car3 glutamatergic neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -207,7 +207,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033023 -comment: The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000052 ! has characterizing marker set NS forest marker set of airway submucosal gland collecting duct epithelial cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 @@ -225,31 +225,31 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033043 -comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000031 ! has characterizing marker set NS forest marker set of lung interstitial macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033048 -comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000059 ! has characterizing marker set NS forest marker set of respiratory suprabasal cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033077 -comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000006 ! has characterizing marker set NS forest marker set of cycling alveolar macrophage (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033080 -comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000010 ! has characterizing marker set NS forest marker set of cycling pulmonary alveolar type 2 cell (Human Lung). property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4042013 -comment: The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000075 ! has characterizing marker set NS forest marker set of Lamp5 Lhx6 neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 @@ -4875,8 +4875,8 @@ property_value: RO:0002162 NCBITaxon:10090 id: https://identifiers.org/uniprot:A0A075B6A3 name: Ig-like domain-containing protein is_a: PR:000000001 -property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:12867038"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:14988498"} +property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:12867038"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16492738"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:8418208"} @@ -13431,8 +13431,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0002162 NCBITaxon:10090 @@ -13461,8 +13461,8 @@ name: Calponin-homology (CH) domain-containing protein is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0002162 NCBITaxon:10090 @@ -18505,8 +18505,8 @@ property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:12225984"} property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:14592810"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:23610411"} -property_value: RO:0002327 GO:0140892 {evidence="IDA", xref="PMID:34585968"} property_value: RO:0002327 GO:0140892 {evidence="IDA", xref="PMID:27114614"} +property_value: RO:0002327 GO:0140892 {evidence="IDA", xref="PMID:34585968"} property_value: RO:0002327 GO:0140900 {evidence="IMP", xref="PMID:25745107"} [Term] @@ -30513,12 +30513,12 @@ name: Cilia- and flagella- associated protein 210 is_a: PR:000000001 property_value: IAO:0000028 "Cfap210" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} @@ -31776,8 +31776,8 @@ property_value: RO:0001025 GO:0032420 {evidence="IDA", xref="PMID:20170899"} property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:28209736"} property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:37952086"} property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:30159668"} -property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:30380417"} property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:24285636"} +property_value: RO:0001025 GO:0120044 {evidence="IDA", xref="PMID:30380417"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0060088 {evidence="IGI", xref="PMID:30380417"} property_value: RO:0002331 GO:0120045 {evidence="IMP", xref="PMID:27693694"} @@ -32958,8 +32958,8 @@ property_value: RO:0001025 GO:0005813 {evidence="IDA", xref="PMID:23386061"} property_value: RO:0001025 GO:0005814 {evidence="IDA", xref="PMID:29487109"} property_value: RO:0001025 GO:0005814 {evidence="IDA", xref="PMID:16297385"} property_value: RO:0001025 GO:0005814 {evidence="IDA", xref="PMID:19625297"} -property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:16687649"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:16920728"} +property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:16687649"} property_value: RO:0001025 GO:0036126 {evidence="IDA", xref="PMID:25361759"} property_value: RO:0001025 GO:0036126 {evidence="IDA", xref="PMID:37198331"} property_value: RO:0001025 GO:0036126 {evidence="IDA", xref="PMID:31904090"} @@ -33563,8 +33563,8 @@ property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} [Term] id: https://identifiers.org/uniprot:A6H8H2 @@ -53328,8 +53328,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19409883"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23786676"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22984613"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24582971"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16314515"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:25433207"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16314515"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23284756"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17257418"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12355204"} @@ -54860,8 +54860,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Lmod3" xsd:string property_value: RO:0001025 GO:0031672 {evidence="IDA", xref="PMID:24960163"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002331 GO:0048741 {evidence="IMP", xref="PMID:25774500"} property_value: RO:0002331 GO:0048741 {evidence="IMP", xref="PMID:26035871"} +property_value: RO:0002331 GO:0048741 {evidence="IMP", xref="PMID:25774500"} [Term] id: https://identifiers.org/uniprot:E9QAG8 @@ -57423,8 +57423,8 @@ name: Nucleoprotein TPR is_a: PR:000000001 property_value: BFO:0000050 GO:0005643 {evidence="IDA", xref="PMID:12513910"} property_value: IAO:0000028 "Tpr" xsd:string -property_value: RO:0001025 GO:0005635 {evidence="IDA", xref="PMID:12424524"} property_value: RO:0001025 GO:0005635 {evidence="IDA", xref="PMID:12513910"} +property_value: RO:0001025 GO:0005635 {evidence="IDA", xref="PMID:12424524"} property_value: RO:0001025 GO:0034399 {evidence="IDA", xref="PMID:22401879"} property_value: RO:0001025 GO:0042405 {evidence="IDA", xref="PMID:12513910"} property_value: RO:0002162 NCBITaxon:10090 @@ -60778,8 +60778,8 @@ property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -69747,8 +69747,8 @@ id: https://identifiers.org/uniprot:M0QY88 name: B9 domain containing 2 is_a: PR:000000001 property_value: IAO:0000028 "B9D2" xsd:string -property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:15916950"} property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:21422230"} +property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:15916950"} property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:19208769"} property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:21763481"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:19208769"} @@ -71403,8 +71403,8 @@ name: C-C motif chemokine 21 is_a: PR:000000001 property_value: IAO:0000028 "CCL21" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002327 GO:0008009 {evidence="IDA", xref="PMID:18308860"} property_value: RO:0002327 GO:0008009 {evidence="IDA", xref="PMID:15778365"} +property_value: RO:0002327 GO:0008009 {evidence="IDA", xref="PMID:18308860"} property_value: RO:0002331 GO:0001768 {evidence="IDA", xref="PMID:12729902"} property_value: RO:0002331 GO:0002407 {evidence="IDA", xref="PMID:15778365"} property_value: RO:0002331 GO:0035759 {evidence="IDA", xref="PMID:15569314"} @@ -73053,8 +73053,8 @@ id: https://identifiers.org/uniprot:O14503 name: Class E basic helix-loop-helix protein 40 is_a: PR:000000001 property_value: IAO:0000028 "BHLHE40" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12624110"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:28797635"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12624110"} property_value: RO:0001025 GO:0016604 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -73333,8 +73333,8 @@ property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:16154903"} property_value: RO:0001025 GO:0031985 {evidence="IDA", xref="PMID:17389686"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0032456 {evidence="IMP", xref="PMID:23677696"} -property_value: RO:0002331 GO:0042147 {evidence="IMP", xref="PMID:17389686"} property_value: RO:0002331 GO:0042147 {evidence="IDA", xref="PMID:15215310"} +property_value: RO:0002331 GO:0042147 {evidence="IMP", xref="PMID:17389686"} property_value: RO:0002331 GO:0042147 {evidence="IDA", xref="PMID:18195106"} [Term] @@ -73448,8 +73448,8 @@ property_value: RO:0002331 GO:0051683 {evidence="IMP", xref="PMID:24862762"} id: https://identifiers.org/uniprot:O14746 name: Telomerase reverse transcriptase is_a: PR:000000001 -property_value: BFO:0000050 GO:0000333 {evidence="IDA", xref="PMID:17940095"} property_value: BFO:0000050 GO:0000333 {evidence="IMP", xref="PMID:11313459"} +property_value: BFO:0000050 GO:0000333 {evidence="IDA", xref="PMID:17940095"} property_value: BFO:0000050 GO:0000333 {evidence="IPI", xref="PMID:19701182"} property_value: BFO:0000050 GO:0000333 {evidence="IDA", xref="PMID:9443919"} property_value: BFO:0000050 GO:0000333 {evidence="IDA", xref="PMID:9398860"} @@ -73951,8 +73951,8 @@ property_value: RO:0002331 GO:0000054 {evidence="IMP", xref="PMID:12724356"} property_value: RO:0002331 GO:0000055 {evidence="IMP", xref="PMID:12773398"} property_value: RO:0002331 GO:0000056 {evidence="IMP", xref="PMID:12773398"} property_value: RO:0002331 GO:0006611 {evidence="IPI", xref="PMID:29666234"} -property_value: RO:0002331 GO:0006611 {evidence="IDA", xref="PMID:22250199"} property_value: RO:0002331 GO:0006611 {evidence="IDA", xref="PMID:29666234"} +property_value: RO:0002331 GO:0006611 {evidence="IDA", xref="PMID:22250199"} property_value: RO:0002331 GO:0006611 {evidence="IMP", xref="PMID:12773398"} property_value: RO:0002331 GO:0006913 {evidence="IMP", xref="PMID:11000203"} @@ -74794,8 +74794,8 @@ name: Histone deacetylase 3 is_a: PR:000000001 property_value: BFO:0000050 GO:0000118 {evidence="IDA", xref="PMID:18326024"} property_value: IAO:0000028 "HDAC3" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18347167"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21030595"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18347167"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18326024"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} @@ -74946,8 +74946,8 @@ property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:25986174"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:31791063"} -property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:11856762"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:25986174"} +property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:11856762"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:31791063"} property_value: RO:0001025 GO:0031088 {evidence="IDA", xref="PMID:15297306"} property_value: RO:0002162 NCBITaxon:9606 @@ -74960,8 +74960,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "ABCC5" xsd:string property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:31791063"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:10840050"} -property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:31791063"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:15501592"} +property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:31791063"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -77219,8 +77219,8 @@ property_value: RO:0002331 GO:0045585 {evidence="IDA", xref="PMID:10209962"} id: https://identifiers.org/uniprot:O43292 name: Glycosylphosphatidylinositol anchor attachment 1 protein is_a: PR:000000001 -property_value: BFO:0000050 GO:0042765 {evidence="IPI", xref="PMID:12802054"} property_value: BFO:0000050 GO:0042765 {evidence="IDA", xref="PMID:14660601"} +property_value: BFO:0000050 GO:0042765 {evidence="IPI", xref="PMID:12802054"} property_value: BFO:0000050 GO:0042765 {evidence="IDA", xref="PMID:11483512"} property_value: BFO:0000050 GO:0042765 {evidence="IDA", xref="PMID:12802054"} property_value: IAO:0000028 "GPAA1" xsd:string @@ -77282,8 +77282,8 @@ property_value: IAO:0000028 "CCP110" xsd:string property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0007099 {evidence="IMP", xref="PMID:17681131"} property_value: RO:0002331 GO:0007099 {evidence="IMP", xref="PMID:16244668"} -property_value: RO:0002331 GO:0051298 {evidence="IMP", xref="PMID:12361598"} property_value: RO:0002331 GO:0051298 {evidence="IDA", xref="PMID:20596027"} +property_value: RO:0002331 GO:0051298 {evidence="IMP", xref="PMID:12361598"} property_value: RO:0002331 GO:0051298 {evidence="IMP", xref="PMID:16760425"} property_value: RO:0002331 GO:0051298 {evidence="IMP", xref="PMID:23486064"} @@ -77633,8 +77633,8 @@ property_value: BFO:0000050 GO:0005634 {evidence="IDA", xref="PMID:18393360"} property_value: BFO:0000050 GO:0090571 {evidence="IPI", xref="PMID:18393360"} property_value: IAO:0000028 "FOXO3" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15084260"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23640897"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22761832"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23640897"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23283301"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16751106"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21329882"} @@ -77812,8 +77812,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:10866665"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:25893292"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0001649 {evidence="IEP", xref="PMID:20128911"} -property_value: RO:0002331 GO:0001837 {evidence="IMP", xref="PMID:17984306"} property_value: RO:0002331 GO:0001837 {evidence="IMP", xref="PMID:9182671"} +property_value: RO:0002331 GO:0001837 {evidence="IMP", xref="PMID:17984306"} property_value: RO:0002331 GO:0014032 {evidence="IMP", xref="PMID:12444107"} [Term] @@ -78107,8 +78107,8 @@ property_value: IAO:0000028 "STX6" xsd:string property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:10506127"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:23818989"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:16154903"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002264 GO:0032456 {evidence="IMP", xref="PMID:25799061"} @@ -78197,8 +78197,8 @@ property_value: BFO:0000050 GO:0005847 {evidence="IDA", xref="PMID:23187700"} property_value: BFO:0000050 GO:0005849 {evidence="IPI", xref="PMID:20695905"} property_value: BFO:0000050 GO:0005849 {evidence="IDA", xref="PMID:20695905"} property_value: BFO:0000050 GO:0005849 {evidence="IPI", xref="PMID:21295486"} -property_value: BFO:0000050 GO:0005849 {evidence="IDA", xref="PMID:21295486"} property_value: BFO:0000050 GO:0005849 {evidence="IDA", xref="PMID:29276085"} +property_value: BFO:0000050 GO:0005849 {evidence="IDA", xref="PMID:21295486"} property_value: IAO:0000028 "NUDT21" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20695905"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19864460"} @@ -78237,8 +78237,8 @@ name: Cilia- and flagella-associated protein 410 is_a: PR:000000001 property_value: IAO:0000028 "CFAP410" xsd:string property_value: RO:0001025 GO:0001750 {evidence="IDA", xref="PMID:27548899"} -property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:26294103"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:26167768"} +property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:26294103"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -78933,8 +78933,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:1990512 {evidence="IPI", xref="PMID:20840750"} property_value: IAO:0000028 "Per2" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23418588"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11889036"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22767893"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11889036"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22208286"} property_value: RO:0001025 GO:0005634 {evidence="IPI", xref="PMID:15689618"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15860628"} @@ -79379,8 +79379,8 @@ id: https://identifiers.org/uniprot:O55186 name: CD59A glycoprotein is_a: PR:000000001 property_value: IAO:0000028 "Cd59a" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18947875"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19299737"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18947875"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:11471050"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0001971 {evidence="IDA", xref="PMID:11471050"} @@ -79485,8 +79485,8 @@ id: https://identifiers.org/uniprot:O55240 name: Retinol dehydrogenase 5 is_a: PR:000000001 property_value: IAO:0000028 "Rdh5" xsd:string -property_value: RO:0001025 GO:0005788 {evidence="IDA", xref="PMID:16223484"} property_value: RO:0001025 GO:0005788 {evidence="IDA", xref="PMID:10739682"} +property_value: RO:0001025 GO:0005788 {evidence="IDA", xref="PMID:16223484"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -81312,8 +81312,8 @@ property_value: RO:0001025 GO:0030016 {evidence="IDA", xref="PMID:10545522"} property_value: RO:0001025 GO:0030017 {evidence="IDA", xref="PMID:17075052"} property_value: RO:0001025 GO:0031672 {evidence="IDA", xref="PMID:10532952"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0045214 {evidence="IMP", xref="PMID:16380103"} property_value: RO:0002264 GO:0045214 {evidence="IMP", xref="PMID:16224063"} +property_value: RO:0002264 GO:0045214 {evidence="IMP", xref="PMID:16380103"} property_value: RO:0002264 GO:0045214 {evidence="IMP", xref="PMID:17075052"} property_value: RO:0002264 GO:0060048 {evidence="IMP", xref="PMID:16224063"} property_value: RO:0002264 GO:0060048 {evidence="IMP", xref="PMID:16380103"} @@ -82243,8 +82243,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20889716"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:27932497"} -property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:28154160"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:20889716"} +property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:28154160"} property_value: RO:0001025 GO:0097546 {evidence="IDA", xref="PMID:20889716"} property_value: RO:0001025 GO:0097731 {evidence="IDA", xref="PMID:20889716"} property_value: RO:0002162 NCBITaxon:9606 @@ -82486,8 +82486,8 @@ name: Transcription initiation protein SPT3 homolog is_a: PR:000000001 property_value: BFO:0000050 GO:0033276 {evidence="IDA", xref="PMID:10373431"} property_value: IAO:0000028 "SUPT3H" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11564863"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:9726987"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11564863"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -83782,8 +83782,8 @@ name: Unconventional myosin-Ia is_a: PR:000000001 property_value: IAO:0000028 "Myo1a" xsd:string property_value: RO:0001025 GO:0005902 {evidence="IDA", xref="PMID:9933937"} -property_value: RO:0001025 GO:0005903 {evidence="IDA", xref="PMID:22114352"} property_value: RO:0001025 GO:0005903 {evidence="IDA", xref="PMID:15758024"} +property_value: RO:0001025 GO:0005903 {evidence="IDA", xref="PMID:22114352"} property_value: RO:0001025 GO:0005903 {evidence="IDA", xref="PMID:20089841"} property_value: RO:0001025 GO:0009925 {evidence="IDA", xref="PMID:9933937"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:9933937"} @@ -84182,15 +84182,15 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17044021"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:9824159"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17409423"} +property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:12941803"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:16195383"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:14633735"} -property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:12941803"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:17927973"} property_value: RO:0002263 GO:0008283 {evidence="IDA", xref="PMID:17975067"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:15060136"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:16740708"} -property_value: RO:0002263 GO:0044342 {evidence="IMP", xref="PMID:12941803"} property_value: RO:0002263 GO:0044342 {evidence="IMP", xref="PMID:16195383"} +property_value: RO:0002263 GO:0044342 {evidence="IMP", xref="PMID:12941803"} property_value: RO:0002263 GO:0044342 {evidence="IMP", xref="PMID:15060136"} property_value: RO:0002263 GO:0044342 {evidence="IDA", xref="PMID:17975067"} property_value: RO:0002263 GO:0044346 {evidence="IDA", xref="PMID:14688275"} @@ -84857,8 +84857,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17383628"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12368184"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11522642"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18159078"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11106548"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16466397"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11106548"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15585950"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0043616 {evidence="IGI", xref="PMID:24075906"} @@ -85218,8 +85218,8 @@ name: Transcription factor Sp1 is_a: PR:000000001 property_value: IAO:0000028 "Sp1" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12119294"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15016652"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:27918959"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15016652"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11004506"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15817708"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15282343"} @@ -85406,8 +85406,8 @@ id: https://identifiers.org/uniprot:O94777 name: Dolichol phosphate-mannose biosynthesis regulatory protein is_a: PR:000000001 property_value: BFO:0000050 GO:0000506 {evidence="IDA", xref="PMID:16162815"} -property_value: BFO:0000050 GO:0000506 {evidence="IPI", xref="PMID:16162815"} property_value: BFO:0000050 GO:0000506 {evidence="IDA", xref="PMID:10944123"} +property_value: BFO:0000050 GO:0000506 {evidence="IPI", xref="PMID:16162815"} property_value: BFO:0000050 GO:0005789 {evidence="IDA", xref="PMID:16162815"} property_value: IAO:0000028 "DPM2" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -86117,8 +86117,8 @@ name: Starch-binding domain-containing protein 1 is_a: PR:000000001 property_value: IAO:0000028 "STBD1" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:9794794"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:24837458"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0030315 {evidence="IDA", xref="PMID:9794794"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0046907 {evidence="IGI", xref="PMID:27358407"} @@ -86223,8 +86223,8 @@ property_value: BFO:0000050 GO:0005654 {evidence="IDA", xref="PMID:16387653"} property_value: BFO:0000050 GO:0036409 {evidence="IDA", xref="PMID:21753189"} property_value: IAO:0000028 "KAT7" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21753189"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24065767"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24739512"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24065767"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="PMID:16387653"} property_value: RO:0002162 NCBITaxon:9606 @@ -86323,8 +86323,8 @@ name: Vesicle-associated membrane protein-associated protein B/C is_a: PR:000000001 property_value: IAO:0000028 "VAPB" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:16891305"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:15372378"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:18713837"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:15372378"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:16227268"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:33124732"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:32344433"} @@ -86791,8 +86791,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:O95602 name: DNA-directed RNA polymerase I subunit RPA1 is_a: PR:000000001 -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR1A" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -86876,8 +86876,8 @@ name: Phosphatidate cytidylyltransferase 2 is_a: PR:000000001 property_value: IAO:0000028 "CDS2" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:31548309"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:26946540"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:25375833"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:26946540"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -87711,8 +87711,8 @@ property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0032839 {evidence="IDA", xref="PMID:17324120"} property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:17324120"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:24140062"} property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:15544046"} +property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:24140062"} property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:17324120"} property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:24567322"} property_value: RO:0002327 GO:0004784 {evidence="IDA", xref="PMID:12551919"} @@ -87851,8 +87851,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "MOS" xsd:string property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0001556 {evidence="IMP", xref="PMID:35670744"} -property_value: RO:0002331 GO:0001556 {evidence="IMP", xref="PMID:34779126"} property_value: RO:0002331 GO:0001556 {evidence="IMP", xref="PMID:34997960"} +property_value: RO:0002331 GO:0001556 {evidence="IMP", xref="PMID:34779126"} [Term] id: https://identifiers.org/uniprot:P00558 @@ -87905,8 +87905,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "F12" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0002353 {evidence="IDA", xref="PMID:6793628"} property_value: RO:0002331 GO:0002353 {evidence="IDA", xref="PMID:18725990"} +property_value: RO:0002331 GO:0002353 {evidence="IDA", xref="PMID:6793628"} property_value: RO:0002331 GO:0002542 {evidence="IDA", xref="PMID:18725990"} [Term] @@ -88274,8 +88274,8 @@ property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:17461796"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:15166224"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:17461796"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:17461796"} -property_value: RO:0001025 GO:0005905 {evidence="IDA", xref="PMID:15166224"} property_value: RO:0001025 GO:0005905 {evidence="IDA", xref="PMID:6091915"} +property_value: RO:0001025 GO:0005905 {evidence="IDA", xref="PMID:15166224"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15166224"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:17461796"} property_value: RO:0002162 NCBITaxon:9606 @@ -88546,8 +88546,8 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21709260"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21606376"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21217760"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20956546"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17658279"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21613615"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17658279"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0042098 {evidence="IDA", xref="PMID:16280321"} property_value: RO:0002264 GO:0001781 {evidence="IMP", xref="PMID:12925700"} @@ -88648,8 +88648,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Il2ra" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16973387"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15843532"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18958875"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15843532"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8769481"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18792410"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16301745"} @@ -88658,15 +88658,15 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15294943"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477352"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8125140"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7688139"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7584142"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17082577"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7584142"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8262055"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15368291"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15909309"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18628982"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15728238"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10760791"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18628982"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12867038"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10760791"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10072077"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19723499"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16227984"} @@ -88744,8 +88744,8 @@ id: https://identifiers.org/uniprot:P01731 name: T-cell surface glycoprotein CD8 alpha chain is_a: PR:000000001 property_value: IAO:0000028 "Cd8a" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19349303"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18836449"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15322158"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17357106"} @@ -88776,8 +88776,8 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9208839"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18776904"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21460847"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20709950"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15240714"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7589135"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15240714"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17082577"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:14568922"} property_value: RO:0002162 NCBITaxon:10090 @@ -88927,11 +88927,11 @@ property_value: RO:0002264 GO:0050778 {evidence="IDA", xref="PMID:10395649"} id: https://identifiers.org/uniprot:P01867 name: Immunoglobulin heavy constant gamma 2B is_a: PR:000000001 -property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16492738"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:7688139"} +property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16492738"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:8041705"} -property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:14988498"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:12867038"} +property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:14988498"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11057672"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:8418208"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:10704460"} @@ -88973,8 +88973,8 @@ property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16275384"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:9834074"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:15692051"} -property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:7688139"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16492738"} +property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:7688139"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:8041705"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:12867038"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11714799"} @@ -89050,8 +89050,8 @@ property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:9834074"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:16492738"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:7688139"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11911823"} -property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11714799"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:12867038"} +property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11714799"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:8041705"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:11911824"} property_value: BFO:0000050 GO:0042571 {evidence="IDA", xref="PMID:6952213"} @@ -89152,11 +89152,11 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10979977"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10704460"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14662849"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477352"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477353"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10072077"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12882831"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17941951"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12882831"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9254656"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19861679"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8041705"} @@ -89171,8 +89171,8 @@ property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:9707605"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:25284781"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:15240667"} -property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:14607964"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:8666928"} +property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:14607964"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:9254656"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:10979977"} property_value: RO:0002263 GO:0042113 {evidence="IDA", xref="PMID:8566034"} @@ -89188,8 +89188,8 @@ property_value: RO:0002264 GO:0019882 {evidence="IDA", xref="PMID:11854359"} property_value: RO:0002264 GO:0045022 {evidence="IDA", xref="PMID:11854359"} property_value: RO:0002264 GO:0050778 {evidence="IMP", xref="PMID:9707605"} property_value: RO:0002264 GO:0050829 {evidence="IMP", xref="PMID:14688352"} -property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:8626447"} property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:7499277"} +property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:8626447"} property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:1373499"} property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:9254656"} @@ -89641,8 +89641,8 @@ name: Collagen alpha-1(II) chain is_a: PR:000000001 property_value: BFO:0000050 GO:0005585 {evidence="IDA", xref="PMID:8660302"} property_value: IAO:0000028 "COL2A1" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} @@ -89714,8 +89714,8 @@ name: Laminin subunit gamma-1 is_a: PR:000000001 property_value: BFO:0000050 GO:0043259 {evidence="IPI", xref="PMID:9299121"} property_value: IAO:0000028 "Lamc1" xsd:string -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12051813"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9264260"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:1292752"} @@ -89739,8 +89739,8 @@ property_value: BFO:0000050 GO:0005606 {evidence="IDA", xref="PMID:9264260"} property_value: BFO:0000050 GO:0043256 {evidence="IDA", xref="PMID:8034675"} property_value: BFO:0000050 GO:0043259 {evidence="IPI", xref="PMID:9299121"} property_value: IAO:0000028 "Lamb1" xsd:string -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:16631359"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:16041630"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15102706"} @@ -90450,8 +90450,8 @@ id: https://identifiers.org/uniprot:P03991 name: H-2 class I histocompatibility antigen, K-W28 alpha chain is_a: PR:000000001 property_value: IAO:0000028 "H2-K1" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11754812"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1538753"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12902470"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15314074"} @@ -90514,8 +90514,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "VTN" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:1632457"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0002162 NCBITaxon:9606 @@ -90537,8 +90537,8 @@ name: Catalase is_a: PR:000000001 property_value: IAO:0000028 "CAT" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002327 GO:0004096 {evidence="IDA", xref="PMID:7882369"} property_value: RO:0002327 GO:0004096 {evidence="IDA", xref="PMID:18379038"} +property_value: RO:0002327 GO:0004096 {evidence="IDA", xref="PMID:7882369"} property_value: RO:0002327 GO:0004096 {evidence="IDA", xref="PMID:18312938"} property_value: RO:0002327 GO:0004096 {evidence="IDA", xref="PMID:16644728"} property_value: RO:0002327 GO:0016209 {evidence="IDA", xref="PMID:10514471"} @@ -90635,8 +90635,8 @@ name: Platelet-derived growth factor subunit A is_a: PR:000000001 property_value: IAO:0000028 "PDGFA" xsd:string property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:2538439"} -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:2836953"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:291037"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:2836953"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -90708,8 +90708,8 @@ property_value: IAO:0000028 "NR3C1" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22022502"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17635946"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:9353307"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15769988"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23878391"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15769988"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0016607 {evidence="IDA", xref="PMID:9353307"} property_value: RO:0002162 NCBITaxon:9606 @@ -90866,8 +90866,8 @@ name: H-2 class I histocompatibility antigen, K-K alpha chain is_a: PR:000000001 property_value: IAO:0000028 "H2-K1" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1538753"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11754812"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11754812"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9133426"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15314074"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12902470"} @@ -90898,8 +90898,8 @@ id: https://identifiers.org/uniprot:P04227 name: H-2 class II histocompatibility antigen, A-Q alpha chain is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:11148202"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598040"} @@ -90931,8 +90931,8 @@ name: H-2 class II histocompatibility antigen, A-D alpha chain is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598040"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598041"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:11148202"} @@ -91180,8 +91180,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:22031944"} property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:7694806"} property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:8805302"} -property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:8906788"} property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:25631937"} +property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:8906788"} property_value: BFO:0000050 GO:0042824 {evidence="IDA", xref="PMID:21263072"} property_value: IAO:0000028 "HLA-A" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:8805302"} @@ -91195,8 +91195,8 @@ property_value: RO:0001025 GO:0070971 {evidence="IDA", xref="PMID:20946353"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0001913 {evidence="IDA", xref="PMID:7504010"} property_value: RO:0002331 GO:0001916 {evidence="IDA", xref="PMID:22031944"} -property_value: RO:0002331 GO:0001916 {evidence="IDA", xref="PMID:25631937"} property_value: RO:0002331 GO:0001916 {evidence="IDA", xref="PMID:8805302"} +property_value: RO:0002331 GO:0001916 {evidence="IDA", xref="PMID:25631937"} property_value: RO:0002331 GO:0001916 {evidence="IDA", xref="PMID:2420472"} property_value: RO:0002331 GO:0002419 {evidence="IDA", xref="PMID:17189421"} property_value: RO:0002331 GO:0002419 {evidence="IDA", xref="PMID:20364150"} @@ -91214,8 +91214,8 @@ property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:20364150"} property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:12138174"} property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:8630735"} property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:17189421"} -property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:2784196"} property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:7504010"} +property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:2784196"} property_value: RO:0002331 GO:0036037 {evidence="IDA", xref="PMID:1402688"} property_value: RO:0002331 GO:0042270 {evidence="IDA", xref="PMID:18502829"} property_value: RO:0002331 GO:0042270 {evidence="IDA", xref="PMID:8839770"} @@ -91327,8 +91327,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19234109"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16507995"} property_value: RO:0001025 GO:0005634 {evidence="IMP", xref="PMID:16479015"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:14963330"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16322561"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24625977"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16322561"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17403783"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20096447"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19011621"} @@ -91384,8 +91384,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Chrng" xsd:string property_value: RO:0001025 GO:0045211 {evidence="IDA", xref="PMID:15883046"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002327 GO:0022848 {evidence="IGI", xref="PMID:8798466"} property_value: RO:0002327 GO:0022848 {evidence="IGI", xref="PMID:2383398"} +property_value: RO:0002327 GO:0022848 {evidence="IGI", xref="PMID:8798466"} [Term] id: https://identifiers.org/uniprot:P04768 @@ -92018,8 +92018,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0005634 {evidence="IDA", xref="PMID:12370307"} property_value: BFO:0000050 GO:0005634 {evidence="IDA", xref="PMID:9443941"} property_value: BFO:0000050 GO:0005634 {evidence="IDA", xref="PMID:21113145"} -property_value: BFO:0000050 GO:0035976 {evidence="IPI", xref="PMID:8662824"} property_value: BFO:0000050 GO:0035976 {evidence="IMP", xref="PMID:26514923"} +property_value: BFO:0000050 GO:0035976 {evidence="IPI", xref="PMID:8662824"} property_value: BFO:0000050 GO:0035976 {evidence="IPI", xref="PMID:9510247"} property_value: BFO:0000050 GO:0035976 {evidence="IDA", xref="PMID:10508860"} property_value: BFO:0000050 GO:0035976 {evidence="IPI", xref="PMID:7816143"} @@ -92037,8 +92037,8 @@ id: https://identifiers.org/uniprot:P05423 name: DNA-directed RNA polymerase III subunit RPC4 is_a: PR:000000001 property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:33335104"} -property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:34675218"} property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:24107381"} +property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:34675218"} property_value: IAO:0000028 "POLR3D" xsd:string property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -92097,8 +92097,8 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15947484"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18971422"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12714519"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12714518"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12714518"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18958875"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15909309"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} @@ -92142,8 +92142,8 @@ property_value: IAO:0000028 "Ly6a" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18971422"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21708977"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20660734"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21508411"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12714519"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12935903"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20103531"} @@ -92216,8 +92216,8 @@ property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:25063885"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:1715889"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:21310825"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19234460"} -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:23154389"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:23023225"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:23154389"} property_value: RO:0001025 GO:0009986 {evidence="HDA", xref="PMID:23981064"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:20563599"} property_value: RO:0001025 GO:0030175 {evidence="IDA", xref="PMID:16803572"} @@ -92325,8 +92325,8 @@ property_value: BFO:0000050 GO:0005588 {evidence="IMP", xref="PMID:9425231"} property_value: IAO:0000028 "COL5A2" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27068509"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0002162 NCBITaxon:9606 @@ -92445,19 +92445,19 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12421911"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18836449"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15322158"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16287714"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8524870"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16287714"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7589135"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17082577"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14609575"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20706986"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15368291"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9208839"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15368291"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19723499"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15795238"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18776904"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18641307"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18776904"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:22072979"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21508411"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19008373"} @@ -92539,8 +92539,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:11148202"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9432982"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598041"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598040"} @@ -92576,8 +92576,8 @@ name: H-2 class II histocompatibility antigen, A-S beta chain is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:11148202"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9432982"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598040"} @@ -92614,8 +92614,8 @@ name: H-2 class II histocompatibility antigen, A-F beta chain is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:11148202"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9432982"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598041"} @@ -92908,8 +92908,8 @@ property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12080348"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:18809582"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19208757"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19160485"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16041368"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16041368"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19188445"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:22528486"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:17475909"} @@ -92977,16 +92977,16 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477352"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477353"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8552190"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19861679"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8041705"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11466198"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8666928"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:6610701"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19015308"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15795238"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17277142"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15845452"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12900455"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15845452"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14609575"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9208839"} @@ -93250,8 +93250,8 @@ property_value: RO:0002264 GO:0006956 {evidence="IDA", xref="PMID:20675597"} property_value: RO:0002264 GO:0006956 {evidence="IMP", xref="PMID:15574507"} property_value: RO:0002264 GO:0006956 {evidence="IDA", xref="PMID:19411110"} property_value: RO:0002264 GO:0006956 {evidence="IMP", xref="PMID:19541934"} -property_value: RO:0002264 GO:0006956 {evidence="IMP", xref="PMID:17921253"} property_value: RO:0002264 GO:0006956 {evidence="IMP", xref="PMID:17517971"} +property_value: RO:0002264 GO:0006956 {evidence="IMP", xref="PMID:17921253"} property_value: RO:0002264 GO:0006957 {evidence="IMP", xref="PMID:27564415"} property_value: RO:0002264 GO:0007601 {evidence="IMP", xref="PMID:17517971"} property_value: RO:0002264 GO:0007601 {evidence="IMP", xref="PMID:25991857"} @@ -93428,8 +93428,8 @@ property_value: IAO:0000028 "P4HB" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:24415753"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:12095988"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:23152784"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:23475612"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:23152784"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21670307"} property_value: RO:0001025 GO:0030027 {evidence="IDA", xref="PMID:24415753"} property_value: RO:0002162 NCBITaxon:9606 @@ -93641,8 +93641,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "DCN" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -94822,8 +94822,8 @@ property_value: BFO:0000050 GO:0005681 {evidence="IPI", xref="PMID:33677607"} property_value: BFO:0000050 GO:0005681 {evidence="IDA", xref="PMID:9731529"} property_value: BFO:0000050 GO:0005681 {evidence="IDA", xref="PMID:9531537"} property_value: BFO:0000050 GO:0005685 {evidence="IDA", xref="PMID:25555158"} -property_value: BFO:0000050 GO:0005685 {evidence="IDA", xref="PMID:23793891"} property_value: BFO:0000050 GO:0005685 {evidence="IDA", xref="PMID:21113136"} +property_value: BFO:0000050 GO:0005685 {evidence="IDA", xref="PMID:23793891"} property_value: BFO:0000050 GO:0005685 {evidence="IPI", xref="PMID:33677607"} property_value: IAO:0000028 "SNRNP70" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21113136"} @@ -95328,8 +95328,8 @@ id: https://identifiers.org/uniprot:P09079 name: Homeobox protein Hox-B5 is_a: PR:000000001 property_value: IAO:0000028 "Hoxb5" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:1353982"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:10579975"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:1353982"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0045446 {evidence="IDA", xref="PMID:12897140"} @@ -95359,8 +95359,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0034663 {evidence="IDA", xref="PMID:12475965"} property_value: IAO:0000028 "P4hb" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:14622145"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:28053051"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:15767459"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:28053051"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:15767678"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:9493907"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:9806833"} @@ -95563,8 +95563,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0030154 {evidence="IDA", xref="PMID:11456449"} property_value: RO:0002264 GO:0001570 {evidence="IMP", xref="PMID:10022836"} property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:14769860"} -property_value: RO:0002264 GO:0001829 {evidence="IDA", xref="PMID:11456449"} property_value: RO:0002264 GO:0001829 {evidence="IMP", xref="PMID:10022836"} +property_value: RO:0002264 GO:0001829 {evidence="IDA", xref="PMID:11456449"} property_value: RO:0002264 GO:0002158 {evidence="IMP", xref="PMID:14769860"} property_value: RO:0002264 GO:0030316 {evidence="IMP", xref="PMID:14769860"} property_value: RO:0002264 GO:0033687 {evidence="IMP", xref="PMID:14769860"} @@ -95706,8 +95706,8 @@ property_value: IAO:0000028 "HMOX1" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:22503972"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:19556236"} property_value: RO:0001025 GO:0005789 {evidence="IMP", xref="PMID:19556236"} -property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:27184847"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:22419571"} +property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:27184847"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0002246 {evidence="IMP", xref="PMID:9884342"} property_value: RO:0002331 GO:0006879 {evidence="IDA", xref="PMID:17915953"} @@ -96798,8 +96798,8 @@ name: DNA-directed RNA polymerases I and III subunit RPAC2 is_a: PR:000000001 property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:33335104"} property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:34675218"} -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR1D" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -96847,16 +96847,16 @@ property_value: IAO:0000028 "TRA" xsd:string property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:29997621"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0002250 {evidence="IDA", xref="PMID:18275829"} -property_value: RO:0002331 GO:0002250 {evidence="IDA", xref="PMID:27036003"} property_value: RO:0002331 GO:0002250 {evidence="IDA", xref="PMID:29997621"} +property_value: RO:0002331 GO:0002250 {evidence="IDA", xref="PMID:27036003"} property_value: RO:0002331 GO:0002286 {evidence="IDA", xref="PMID:27036003"} [Term] id: https://identifiers.org/uniprot:P0DSE2 name: M1-specific T cell receptor beta chain is_a: PR:000000001 -property_value: BFO:0000050 GO:0042101 {evidence="IDA", xref="PMID:27036003"} property_value: BFO:0000050 GO:0042101 {evidence="IDA", xref="PMID:29997621"} +property_value: BFO:0000050 GO:0042101 {evidence="IDA", xref="PMID:27036003"} property_value: BFO:0000050 GO:0042101 {evidence="IDA", xref="PMID:12796775"} property_value: BFO:0000050 GO:0042101 {evidence="IDA", xref="PMID:18275829"} property_value: IAO:0000028 "TRB" xsd:string @@ -97230,8 +97230,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "ACR" xsd:string property_value: RO:0001025 GO:0005634 {evidence="HDA", xref="PMID:21630459"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0007340 {evidence="IMP", xref="PMID:37004249"} property_value: RO:0002331 GO:0007340 {evidence="IMP", xref="PMID:2550339"} +property_value: RO:0002331 GO:0007340 {evidence="IMP", xref="PMID:37004249"} [Term] id: https://identifiers.org/uniprot:P10412 @@ -97355,8 +97355,8 @@ name: Nidogen-1 is_a: PR:000000001 property_value: IAO:0000028 "Nid1" xsd:string property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:16330543"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12588956"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:14566019"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12588956"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:17596926"} @@ -97606,8 +97606,8 @@ property_value: RO:0002331 GO:0001809 {evidence="IDA", xref="PMID:15579591"} property_value: RO:0002331 GO:0002455 {evidence="IDA", xref="PMID:20382503"} property_value: RO:0002331 GO:0007339 {evidence="IMP", xref="PMID:11417900"} property_value: RO:0002331 GO:0007339 {evidence="IGI", xref="PMID:9609824"} -property_value: RO:0002331 GO:0035803 {evidence="IMP", xref="PMID:14645511"} property_value: RO:0002331 GO:0035803 {evidence="IMP", xref="PMID:18420282"} +property_value: RO:0002331 GO:0035803 {evidence="IMP", xref="PMID:14645511"} property_value: RO:0002331 GO:0048599 {evidence="IMP", xref="PMID:18420282"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:18667753"} @@ -97779,8 +97779,8 @@ id: https://identifiers.org/uniprot:P10922 name: Histone H1.0 is_a: PR:000000001 property_value: IAO:0000028 "H1-0" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12606334"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:9067599"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12606334"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22868987"} property_value: RO:0002162 NCBITaxon:10090 @@ -98073,8 +98073,8 @@ property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:10742111"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:22984613"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:11511678"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:22821713"} -property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:2209468"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:18559979"} +property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:2209468"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:15065125"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:9421166"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:15728191"} @@ -98587,8 +98587,8 @@ id: https://identifiers.org/uniprot:P11802 name: Cyclin-dependent kinase 4 is_a: PR:000000001 property_value: IAO:0000028 "CDK4" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20399237"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18827403"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20399237"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16109376"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} @@ -98651,8 +98651,8 @@ property_value: RO:0002263 GO:1990874 {evidence="IMP", xref="PMID:8675666"} property_value: RO:0002264 GO:0001543 {evidence="IMP", xref="PMID:11384650"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:11606482"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:9507198"} -property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:12574102"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:10076178"} +property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:12574102"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:7989296"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:9466969"} property_value: RO:0002264 GO:0001991 {evidence="IMP", xref="PMID:9852267"} @@ -98789,8 +98789,8 @@ property_value: BFO:0000050 GO:0070557 {evidence="IDA", xref="PMID:11595739"} property_value: BFO:0000050 GO:0070557 {evidence="IDA", xref="PMID:18794347"} property_value: IAO:0000028 "PCNA" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24939902"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15494374"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19736315"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15494374"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19734146"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0016604 {evidence="IDA", xref="GO_REF:0000052"} @@ -98889,8 +98889,8 @@ name: Collagen alpha-1(XI) chain is_a: PR:000000001 property_value: BFO:0000050 GO:0005592 {evidence="IDA", xref="PMID:3182841"} property_value: IAO:0000028 "COL11A1" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0007601 {evidence="IMP", xref="PMID:10573014"} property_value: RO:0002331 GO:0007601 {evidence="IMP", xref="PMID:8872475"} @@ -98902,8 +98902,8 @@ id: https://identifiers.org/uniprot:P12109 name: Collagen alpha-1(VI) chain is_a: PR:000000001 property_value: IAO:0000028 "COL6A1" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} @@ -98919,8 +98919,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "COL6A2" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0002162 NCBITaxon:9606 @@ -99887,8 +99887,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "VCAN" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -100082,8 +100082,8 @@ property_value: BFO:0000050 GO:0032398 {evidence="IDA", xref="PMID:25631937"} property_value: BFO:0000050 GO:0032398 {evidence="IDA", xref="PMID:9427624"} property_value: BFO:0000050 GO:0032398 {evidence="IDA", xref="PMID:30087334"} property_value: BFO:0000050 GO:0032398 {evidence="IDA", xref="PMID:23335510"} -property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:18448674"} property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:16474394"} +property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:18448674"} property_value: BFO:0000050 GO:0042612 {evidence="IDA", xref="PMID:12411439"} property_value: IAO:0000028 "HLA-E" xsd:string property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:25631937"} @@ -100170,8 +100170,8 @@ property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:21705333"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:12958022"} property_value: RO:0001025 GO:0016323 {evidence="IDA", 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property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15843532"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8920854"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9645617"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7566153"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477353"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7795661"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19299737"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7795661"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15117976"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11380685"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7790813"} @@ -102539,8 +102539,8 @@ id: https://identifiers.org/uniprot:P16298 name: Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform is_a: 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xref="PMID:16203996"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10072077"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18836449"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15477346"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18836449"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16973387"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16227984"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18628982"} @@ -104260,8 +104260,8 @@ property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:14625387"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0001993 {evidence="IMP", xref="PMID:10358008"} property_value: RO:0002264 GO:0002025 {evidence="IMP", xref="PMID:10358009"} -property_value: RO:0002264 GO:0002025 {evidence="IGI", xref="PMID:10358009"} property_value: RO:0002264 GO:0002025 {evidence="IGI", 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property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12944467"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12944467"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19393617"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:24071584"} property_value: RO:0002162 NCBITaxon:9606 @@ -104762,8 +104762,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0005665 {evidence="IDA", xref="PMID:9852112"} property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:33335104"} property_value: BFO:0000050 GO:0005666 {evidence="IDA", xref="PMID:34675218"} -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", 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-property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:25335925"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15183310"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18662995"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:25335925"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="PMID:21076177"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19480014"} property_value: RO:0001025 GO:0043073 {evidence="IDA", xref="PMID:12641567"} @@ -105435,8 +105435,8 @@ id: https://identifiers.org/uniprot:P20293 name: T-box transcription factor T is_a: PR:000000001 property_value: IAO:0000028 "Tbxt" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:8293872"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16801560"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:8293872"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:7588606"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19796622"} property_value: RO:0002162 NCBITaxon:10090 @@ -105532,13 +105532,13 @@ property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17114649"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:12074840"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:15255972"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:19208628"} +property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:22523538"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:24554721"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:22022532"} -property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:22523538"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:24035762"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:16980967"} -property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:23861879"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:17984326"} +property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:23861879"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:8535073"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:15834957"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:3147150"} @@ -105789,8 +105789,8 @@ name: Histone H2A type 1-D is_a: PR:000000001 property_value: IAO:0000028 "H2AC7" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16319397"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16457589"} property_value: RO:0001025 GO:0005634 {evidence="HDA", xref="PMID:21630459"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16457589"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -105799,10 +105799,10 @@ name: Low affinity immunoglobulin epsilon Fc receptor is_a: PR:000000001 property_value: IAO:0000028 "Fcer2" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:11435465"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15909309"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14662849"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8418208"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15909309"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8041705"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8418208"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12882831"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19414760"} @@ -105879,8 +105879,8 @@ id: https://identifiers.org/uniprot:P20749 name: B-cell lymphoma 3 protein is_a: PR:000000001 property_value: IAO:0000028 "BCL3" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16306601"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16280327"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16306601"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:8196632"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="GO_REF:0000052"} @@ -106605,8 +106605,8 @@ property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:19246320"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002327 GO:0005201 {evidence="HDA", xref="PMID:28344315"} property_value: RO:0002331 GO:0002922 {evidence="IDA", xref="PMID:19004505"} -property_value: RO:0002331 GO:0007339 {evidence="IDA", xref="PMID:19700799"} property_value: RO:0002331 GO:0007339 {evidence="IMP", xref="PMID:19004505"} +property_value: RO:0002331 GO:0007339 {evidence="IDA", xref="PMID:19700799"} property_value: RO:0002331 GO:0007339 {evidence="IDA", xref="PMID:19246320"} property_value: RO:0002331 GO:0007339 {evidence="IGI", xref="PMID:9609824"} @@ -107265,9 +107265,9 @@ is_a: PR:000000001 property_value: IAO:0000028 "USF1" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18234320"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:2249772"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15358760"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="GO_REF:0000054"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:8576131"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="GO_REF:0000054"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15358760"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -107422,8 +107422,8 @@ property_value: BFO:0000050 GO:0042105 {evidence="IDA", xref="PMID:9064344"} property_value: IAO:0000028 "Cd3e" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:22732588"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15368291"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10485657"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20660734"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10485657"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8125140"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7630421"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19838199"} @@ -107603,8 +107603,8 @@ property_value: RO:0002331 GO:0099170 {evidence="IDA", xref="PMID:28069946"} property_value: RO:0002331 GO:0099170 {evidence="IMP", xref="PMID:28069946"} property_value: RO:0002331 GO:1904948 {evidence="IDA", xref="PMID:23517308"} property_value: RO:0002331 GO:1904948 {evidence="IDA", xref="PMID:14557550"} -property_value: RO:0002331 GO:1904948 {evidence="IMP", xref="PMID:18953410"} property_value: RO:0002331 GO:1904948 {evidence="IGI", xref="PMID:23324743"} +property_value: RO:0002331 GO:1904948 {evidence="IMP", xref="PMID:18953410"} property_value: RO:0002331 GO:1904948 {evidence="IDA", xref="PMID:15748172"} [Term] @@ -107804,8 +107804,8 @@ name: Fibulin-1 is_a: PR:000000001 property_value: IAO:0000028 "FBLN1" xsd:string property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:2269669"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0001025 GO:0071953 {evidence="IDA", xref="PMID:7534784"} property_value: RO:0002162 NCBITaxon:9606 @@ -107818,8 +107818,8 @@ id: https://identifiers.org/uniprot:P23150 name: H-2 class II histocompatibility antigen, I-E alpha chain is_a: PR:000000001 property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:9492004"} -property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8638109"} +property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7985028"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:7679955"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598041"} property_value: BFO:0000050 GO:0042613 {evidence="IDA", xref="PMID:8598040"} @@ -108075,8 +108075,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19460357"} property_value: RO:0001025 GO:0005634 {evidence="IMP", xref="PMID:21871177"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18045535"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19059439"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20041225"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17560175"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20041225"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16814409"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:14988002"} property_value: RO:0001025 GO:0005634 {evidence="IMP", xref="PMID:21399639"} @@ -108231,10 +108231,10 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17332504"} property_value: RO:0001025 GO:0005654 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0016604 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:9230084"} -property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:17332504"} property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:15247905"} -property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:17245429"} +property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:17332504"} property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:12470659"} +property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:17245429"} property_value: RO:0001025 GO:0016605 {evidence="IDA", xref="PMID:14647468"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0030870 {evidence="IDA", xref="PMID:15767676"} @@ -108518,8 +108518,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11718560"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22173032"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12927808"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12154087"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19090619"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16129783"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:19090619"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16129783"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15195100"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:11718560"} @@ -108648,8 +108648,8 @@ id: https://identifiers.org/uniprot:P23949 name: mRNA decay activator protein ZFP36L2 is_a: PR:000000001 property_value: IAO:0000028 "Zfp36l2" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24733888"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22367205"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24733888"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11796723"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0030097 {evidence="IMP", xref="PMID:19633199"} @@ -109042,13 +109042,13 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8543797"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14707049"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15314074"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18958875"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1346270"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1346270"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19487454"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8125140"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7477352"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19299737"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7795661"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19299737"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8920854"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7774619"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12882831"} @@ -109056,8 +109056,8 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15477346"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1385153"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:9028339"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10365441"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20103531"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:22732588"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:7807014"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:2118158"} @@ -109766,8 +109766,8 @@ id: https://identifiers.org/uniprot:P25940 name: Collagen alpha-3(V) chain is_a: PR:000000001 property_value: IAO:0000028 "COL5A3" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002327 GO:0030020 {evidence="HDA", xref="PMID:28344315"} @@ -110071,8 +110071,8 @@ property_value: BFO:0000050 GO:0005681 {evidence="IDA", xref="PMID:9731529"} property_value: BFO:0000050 GO:0071004 {evidence="IDA", xref="PMID:2531895"} property_value: BFO:0000050 GO:0089701 {evidence="IDA", xref="PMID:1824937"} property_value: BFO:0000050 GO:0089701 {evidence="IPI", xref="PMID:23273425"} -property_value: BFO:0000050 GO:0089701 {evidence="IDA", xref="PMID:2531895"} property_value: BFO:0000050 GO:0089701 {evidence="IPI", xref="PMID:11551507"} +property_value: BFO:0000050 GO:0089701 {evidence="IDA", xref="PMID:2531895"} property_value: IAO:0000028 "U2AF2" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:1824937"} property_value: RO:0001025 GO:0016607 {evidence="IDA", xref="PMID:21984414"} @@ -110524,14 +110524,14 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18684012"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14560001"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17277142"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10979977"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15240714"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:20685650"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:11894097"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:14607964"} -property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:8666928"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:10979977"} +property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:8666928"} property_value: RO:0002263 GO:0042100 {evidence="IDA", xref="PMID:8920854"} property_value: RO:0002263 GO:0042100 {evidence="IGI", xref="PMID:15963492"} property_value: RO:0002264 GO:0002768 {evidence="IDA", xref="PMID:15240714"} @@ -110672,8 +110672,8 @@ name: Collagen alpha-1(VIII) chain is_a: PR:000000001 property_value: IAO:0000028 "COL8A1" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23979707"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27068509"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} @@ -110707,9 +110707,9 @@ property_value: RO:0001025 GO:0001673 {evidence="IDA", xref="PMID:19176879"} property_value: RO:0001025 GO:0001673 {evidence="IDA", xref="PMID:17475928"} property_value: RO:0001025 GO:0001673 {evidence="IDA", xref="PMID:17696610"} property_value: RO:0001025 GO:0001673 {evidence="IDA", xref="PMID:14611631"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21991325"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22297488"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20360685"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21991325"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21911473"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20516196"} property_value: RO:0002162 NCBITaxon:10090 @@ -110739,8 +110739,8 @@ id: https://identifiers.org/uniprot:P27694 name: Replication protein A 70 kDa DNA-binding subunit is_a: PR:000000001 property_value: BFO:0000050 GO:0005662 {evidence="IPI", xref="PMID:7760808"} -property_value: BFO:0000050 GO:0005662 {evidence="IDA", xref="PMID:11927569"} property_value: BFO:0000050 GO:0005662 {evidence="IDA", xref="PMID:27723717"} +property_value: BFO:0000050 GO:0005662 {evidence="IDA", xref="PMID:11927569"} property_value: BFO:0000050 GO:0005662 {evidence="IPI", xref="PMID:11927569"} property_value: BFO:0000050 GO:0005662 {evidence="IDA", xref="PMID:27723720"} property_value: IAO:0000028 "RPA1" xsd:string @@ -110811,8 +110811,8 @@ property_value: BFO:0000050 GO:0005634 {evidence="IDA", xref="PMID:16936075"} property_value: BFO:0000050 GO:0090575 {evidence="IPI", xref="PMID:21075118"} property_value: BFO:0000050 GO:1990907 {evidence="IDA", xref="PMID:20371816"} property_value: IAO:0000028 "Lef1" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12551949"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20371816"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12551949"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:30659184"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18202148"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:10498690"} @@ -110898,8 +110898,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:10229828"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:14990792"} -property_value: RO:0002264 GO:0045953 {evidence="IGI", xref="PMID:19535641"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:10229823"} +property_value: RO:0002264 GO:0045953 {evidence="IGI", xref="PMID:19535641"} [Term] id: https://identifiers.org/uniprot:P27814 @@ -110909,8 +110909,8 @@ property_value: IAO:0000028 "Klrb1c" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16973387"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10229828"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14607906"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1506685"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14607906"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:16455951"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:23034280"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10704459"} @@ -110956,8 +110956,8 @@ property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:21190736"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:24263861"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:24454821"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:22572157"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:30188326"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:22572157"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:23826168"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:14966132"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:18458083"} @@ -110993,8 +110993,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15647252"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:1673925"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:14656222"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15280201"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15067314"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16880268"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15067314"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15550389"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:1900200 {evidence="IMP", xref="PMID:20040500"} @@ -111066,8 +111066,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15519652"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18824566"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15870285"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12821655"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15509789"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:12871593"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:15509789"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:10588870"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11940593"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21122806"} @@ -111712,8 +111712,8 @@ name: Nck-associated protein 1 is_a: PR:000000001 property_value: IAO:0000028 "Nckap1" xsd:string property_value: RO:0001025 GO:0001726 {evidence="IDA", xref="PMID:27927633"} -property_value: RO:0001025 GO:0030027 {evidence="IDA", xref="PMID:14765121"} property_value: RO:0001025 GO:0030027 {evidence="IDA", xref="PMID:27927633"} +property_value: RO:0001025 GO:0030027 {evidence="IDA", xref="PMID:14765121"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007354 {evidence="IMP", xref="PMID:16831833"} property_value: RO:0002264 GO:0008078 {evidence="IMP", xref="PMID:16831833"} @@ -112093,8 +112093,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17242199"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:11861477"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22194471"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16522640"} -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17641088"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:18722179"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17641088"} property_value: RO:0001025 GO:0045120 {evidence="IDA", xref="PMID:16822332"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002432 GO:0005634 {evidence="IPI", xref="PMID:22323595"} @@ -112424,8 +112424,8 @@ name: Caspase-1 is_a: PR:000000001 property_value: IAO:0000028 "CASP1" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:12191486"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:32109412"} +property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:12191486"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:32553275"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:15326478"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:32553275"} @@ -112472,8 +112472,8 @@ id: https://identifiers.org/uniprot:P29508 name: Serpin B3 is_a: PR:000000001 property_value: IAO:0000028 "SERPINB3" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21383048"} property_value: RO:0001025 GO:0005634 {evidence="HDA", xref="PMID:21630459"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21383048"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:20527027"} property_value: RO:0002162 NCBITaxon:9606 @@ -112934,8 +112934,8 @@ id: https://identifiers.org/uniprot:P30282 name: G1/S-specific cyclin-D3 is_a: PR:000000001 property_value: IAO:0000028 "Ccnd3" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23109711"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:21539824"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:23109711"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0042098 {evidence="IMP", xref="PMID:14706337"} @@ -113244,8 +113244,8 @@ id: https://identifiers.org/uniprot:P30740 name: Leukocyte elastase inhibitor is_a: PR:000000001 property_value: IAO:0000028 "SERPINB1" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28344315"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0044342 {evidence="IDA", xref="PMID:26701651"} @@ -113378,10 +113378,10 @@ property_value: IAO:0000028 "Des" xsd:string property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:26787680"} property_value: RO:0001025 GO:0005635 {evidence="IDA", xref="PMID:35959657"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:11694502"} -property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:10532952"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:32878913"} -property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:15138196"} +property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:10532952"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:26787680"} +property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:15138196"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:14627610"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:11694502"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:11694502"} @@ -113980,8 +113980,8 @@ id: https://identifiers.org/uniprot:P31809 name: Cell adhesion molecule CEACAM1 is_a: PR:000000001 property_value: IAO:0000028 "Ceacam1" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:23123061"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12832451"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:23123061"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19008452"} property_value: RO:0001025 GO:0060170 {evidence="IDA", xref="PMID:22179047"} property_value: RO:0002162 NCBITaxon:10090 @@ -114729,8 +114729,8 @@ property_value: RO:0002264 GO:0042110 {evidence="IGI", xref="PMID:17164250"} property_value: RO:0002327 GO:0004905 {evidence="IMP", xref="PMID:14532120"} property_value: RO:0002327 GO:0004905 {evidence="IDA", xref="PMID:23872679"} property_value: RO:0002331 GO:0060337 {evidence="IMP", xref="PMID:14532120"} -property_value: RO:0002331 GO:0060337 {evidence="IDA", xref="PMID:23872679"} property_value: RO:0002331 GO:0060337 {evidence="IMP", xref="PMID:27129230"} +property_value: RO:0002331 GO:0060337 {evidence="IDA", xref="PMID:23872679"} [Term] id: https://identifiers.org/uniprot:P33897 @@ -115810,8 +115810,8 @@ property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16855206"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:18625840"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12714744"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16129783"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:20168299"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:14612397"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:20168299"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:23500592"} property_value: RO:0001025 GO:0015030 {evidence="IDA", xref="PMID:7768196"} property_value: RO:0002162 NCBITaxon:10090 @@ -115826,8 +115826,8 @@ property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:3536967"} property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:7534784"} property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:1860873"} property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:22355679"} -property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:12429738"} property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:10424889"} +property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:12429738"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:3536967"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:3536967"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} @@ -115847,8 +115847,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "FBN2" xsd:string property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:8120105"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -115874,8 +115874,8 @@ name: Calnexin is_a: PR:000000001 property_value: IAO:0000028 "Canx" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:17204322"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:9094723"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:34338405"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:9094723"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:15452145"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:16204232"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:21606205"} @@ -117550,8 +117550,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Col18a1" xsd:string property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12588956"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:19651211"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15254016"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:19651211"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:7568013"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:22159717"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28071719"} @@ -117625,8 +117625,8 @@ property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:16427635"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:21947081"} property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:23434913"} property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:24191021"} -property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:23863479"} property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:23610556"} +property_value: RO:0001025 GO:0045177 {evidence="IDA", xref="PMID:23863479"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0036305 {evidence="IMP", xref="PMID:27015268"} property_value: RO:0002331 GO:1903672 {evidence="IMP", xref="PMID:25753039"} @@ -118002,8 +118002,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0005802 {evidence="IDA", xref="PMID:17488291"} property_value: IAO:0000028 "ARL1" xsd:string property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000054"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0042147 {evidence="IMP", xref="PMID:19224922"} @@ -118112,8 +118112,8 @@ property_value: BFO:0000050 GO:0090575 {evidence="IMP", xref="PMID:16946298"} property_value: BFO:0000050 GO:0090575 {evidence="IPI", xref="PMID:8662591"} property_value: BFO:0000050 GO:0090575 {evidence="IPI", xref="PMID:17676033"} property_value: IAO:0000028 "STAT3" xsd:string -property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17360477"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:28065600"} +property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:17360477"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:31899195"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:24846175"} property_value: RO:0001025 GO:0005634 {evidence="IDA", xref="PMID:22783022"} @@ -121131,8 +121131,8 @@ property_value: RO:0002264 GO:0043366 {evidence="IGI", xref="PMID:9275205"} property_value: RO:0002264 GO:0045588 {evidence="IMP", xref="PMID:7477352"} property_value: RO:0002264 GO:0045588 {evidence="IMP", xref="PMID:8790395"} property_value: RO:0002264 GO:0046638 {evidence="IGI", xref="PMID:9275205"} -property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:8626447"} property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:7499277"} +property_value: RO:0002264 GO:0050853 {evidence="IDA", xref="PMID:8626447"} property_value: RO:0002264 GO:0051649 {evidence="IMP", xref="PMID:9000133"} property_value: RO:0002331 GO:0002223 {evidence="IMP", xref="PMID:19136564"} property_value: RO:0002331 GO:0002281 {evidence="IMP", xref="PMID:17086186"} @@ -122924,8 +122924,8 @@ id: https://identifiers.org/uniprot:P50289 name: Acrosomal protein SP-10 is_a: PR:000000001 property_value: IAO:0000028 "Acrv1" xsd:string -property_value: RO:0001025 GO:0001669 {evidence="IDA", xref="PMID:1591350"} property_value: RO:0001025 GO:0001669 {evidence="IDA", xref="PMID:16093322"} +property_value: RO:0001025 GO:0001669 {evidence="IDA", xref="PMID:1591350"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -123137,8 +123137,8 @@ property_value: RO:0002331 GO:0016558 {evidence="IDA", xref="PMID:24235149"} property_value: RO:0002331 GO:0016558 {evidence="IDA", xref="PMID:26344566"} property_value: RO:0002331 GO:0016558 {evidence="IGI", xref="PMID:18346465"} property_value: RO:0002331 GO:0016558 {evidence="IDA", xref="PMID:24662292"} -property_value: RO:0002331 GO:0016558 {evidence="IMP", xref="PMID:11463335"} property_value: RO:0002331 GO:0016558 {evidence="IMP", xref="PMID:33389129"} +property_value: RO:0002331 GO:0016558 {evidence="IMP", xref="PMID:11463335"} property_value: RO:0002331 GO:0016558 {evidence="IDA", xref="PMID:25538232"} property_value: RO:0002331 GO:0016558 {evidence="IDA", xref="PMID:21976670"} property_value: RO:0002331 GO:0016560 {evidence="IDA", xref="PMID:21976670"} @@ -123459,8 +123459,8 @@ property_value: RO:0001025 GO:0005768 {evidence="IDA", xref="PMID:26582200"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:24035762"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:24334765"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:11172003"} -property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:15588329"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:25592972"} +property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:15588329"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:27390154"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:24760869"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:35353806"} @@ -123823,8 +123823,8 @@ property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:11115849"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:24066022"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:21084288"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:16319126"} -property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12138167"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:9008709"} +property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12138167"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0014902 {evidence="IMP", xref="PMID:14517320"} property_value: RO:0002263 GO:0051649 {evidence="IMP", xref="PMID:21084288"} @@ -124549,8 +124549,8 @@ property_value: RO:0002162 NCBITaxon:10090 id: https://identifiers.org/uniprot:P52434 name: DNA-directed RNA polymerases I, II, and III subunit RPABC3 is_a: PR:000000001 -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR2H" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -124775,8 +124775,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0002002 {evidence="IMP", xref="PMID:15173164"} property_value: RO:0002264 GO:0002448 {evidence="IMP", xref="PMID:10466726"} property_value: RO:0002264 GO:0002448 {evidence="IMP", xref="PMID:10466727"} -property_value: RO:0002432 GO:0005794 {evidence="IDA", xref="PMID:8294485"} property_value: RO:0002432 GO:0005794 {evidence="IDA", xref="PMID:10639137"} +property_value: RO:0002432 GO:0005794 {evidence="IDA", xref="PMID:8294485"} property_value: RO:0002432 GO:0005794 {evidence="IDA", xref="PMID:24326668"} [Term] @@ -125451,8 +125451,8 @@ property_value: RO:0002264 GO:0016446 {evidence="IMP", xref="PMID:17015724"} property_value: RO:0002264 GO:0016446 {evidence="IMP", xref="PMID:16618598"} property_value: RO:0002264 GO:0016446 {evidence="IMP", xref="PMID:15238604"} property_value: RO:0002264 GO:0016446 {evidence="IMP", xref="PMID:10662804"} -property_value: RO:0002264 GO:0045190 {evidence="IGI", xref="PMID:17015724"} property_value: RO:0002264 GO:0045190 {evidence="IMP", xref="PMID:16618598"} +property_value: RO:0002264 GO:0045190 {evidence="IGI", xref="PMID:17015724"} [Term] id: https://identifiers.org/uniprot:P54279 @@ -125749,8 +125749,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0001527 {evidence="IDA", xref="PMID:24353434"} property_value: IAO:0000028 "MFAP2" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -126145,8 +126145,8 @@ property_value: RO:0001025 GO:0055037 {evidence="IDA", xref="PMID:18094055"} property_value: RO:0001025 GO:0055037 {evidence="IDA", xref="PMID:19061864"} property_value: RO:0001025 GO:0060170 {evidence="IDA", xref="PMID:29038301"} property_value: RO:0001025 GO:0097546 {evidence="IDA", xref="PMID:24947469"} -property_value: RO:0001025 GO:0097730 {evidence="IDA", xref="PMID:19625297"} property_value: RO:0001025 GO:0097730 {evidence="IDA", xref="PMID:20592197"} +property_value: RO:0001025 GO:0097730 {evidence="IDA", xref="PMID:19625297"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -126761,8 +126761,8 @@ property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:18488998"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:22689656"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:33886552"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:19684112"} -property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:25644602"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:19654211"} +property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:25644602"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:35353806"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:29487109"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:21209331"} @@ -127185,8 +127185,8 @@ id: https://identifiers.org/uniprot:P57780 name: Alpha-actinin-4 is_a: PR:000000001 property_value: IAO:0000028 "Actn4" xsd:string -property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20215401"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20368620"} +property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20215401"} property_value: RO:0001025 GO:0031143 {evidence="IDA", xref="PMID:15633123"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0090521 {evidence="IMP", xref="PMID:16837921"} @@ -128478,8 +128478,8 @@ property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:21540189"} property_value: RO:0001025 GO:0005770 {evidence="IDA", xref="PMID:21540189"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:23620790"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19106094"} -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:10521508"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19665027"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:10521508"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:10644702"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:18308860"} property_value: RO:0001025 GO:0031252 {evidence="IDA", xref="PMID:12421915"} @@ -128727,8 +128727,8 @@ property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: BFO:0000050 GO:0022627 {evidence="HDA", xref="PMID:15883184"} property_value: BFO:0000050 GO:0022627 {evidence="IDA", xref="PMID:8706699"} property_value: IAO:0000028 "RPS3A" xsd:string -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15572026"} property_value: RO:0001025 GO:0005730 {evidence="HDA", xref="PMID:16791210"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15572026"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -129368,8 +129368,8 @@ property_value: BFO:0000050 GO:0022627 {evidence="IDA", xref="PMID:25957688"} property_value: IAO:0000028 "RPS23" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002327 GO:0003735 {evidence="IDA", xref="PMID:23636399"} property_value: RO:0002327 GO:0003735 {evidence="IMP", xref="PMID:28257692"} +property_value: RO:0002327 GO:0003735 {evidence="IDA", xref="PMID:23636399"} property_value: RO:0002327 GO:0003735 {evidence="HDA", xref="PMID:15883184"} [Term] @@ -130154,8 +130154,8 @@ property_value: RO:0002264 GO:0008283 {evidence="IDA", xref="PMID:14712229"} id: https://identifiers.org/uniprot:P62875 name: DNA-directed RNA polymerases I, II, and III subunit RPABC5 is_a: PR:000000001 -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR2L" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -130198,8 +130198,8 @@ id: https://identifiers.org/uniprot:P62888 name: Large ribosomal subunit protein eL30 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL30" xsd:string @@ -130228,8 +130228,8 @@ id: https://identifiers.org/uniprot:P62891 name: Large ribosomal subunit protein eL39 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL39" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -130288,8 +130288,8 @@ name: Large ribosomal subunit protein uL1 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL10A" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -130311,8 +130311,8 @@ name: Large ribosomal subunit protein eL32 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL32" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -130363,8 +130363,8 @@ property_value: RO:0002432 GO:0042585 {evidence="IDA", xref="PMID:24244602"} id: https://identifiers.org/uniprot:P62917 name: Large ribosomal subunit protein uL2 is_a: PR:000000001 -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} @@ -131466,8 +131466,8 @@ property_value: IAO:0000028 "EEF1A1" xsd:string property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:9852145"} property_value: RO:0001025 GO:0032587 {evidence="IDA", xref="PMID:19158340"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002432 GO:0005840 {evidence="IDA", xref="PMID:26651998"} property_value: RO:0002432 GO:0005840 {evidence="IDA", xref="PMID:36264623"} +property_value: RO:0002432 GO:0005840 {evidence="IDA", xref="PMID:26651998"} property_value: RO:0002432 GO:0022626 {evidence="IDA", xref="PMID:36638793"} [Term] @@ -131549,8 +131549,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -132290,8 +132290,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Has2" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0001570 {evidence="IMP", xref="PMID:10930438"} -property_value: RO:0002331 GO:0030213 {evidence="IDA", xref="PMID:10455188"} property_value: RO:0002331 GO:0030213 {evidence="IMP", xref="PMID:10930438"} +property_value: RO:0002331 GO:0030213 {evidence="IDA", xref="PMID:10455188"} property_value: RO:0002331 GO:0030213 {evidence="IDA", xref="PMID:8798545"} property_value: RO:0002331 GO:0090500 {evidence="IMP", xref="PMID:10930438"} @@ -132491,11 +132491,11 @@ property_value: RO:0002331 GO:0050729 {evidence="IMP", xref="PMID:23348507"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:34671164"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:30392956"} property_value: RO:0002331 GO:0050830 {evidence="IDA", xref="PMID:30392956"} -property_value: RO:0002331 GO:0070269 {evidence="IMP", xref="PMID:23348507"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:34671164"} +property_value: RO:0002331 GO:0070269 {evidence="IMP", xref="PMID:23348507"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:30135078"} -property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:30589883"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:32109412"} +property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:30589883"} property_value: RO:0002331 GO:0141201 {evidence="IDA", xref="PMID:38632402"} property_value: RO:0002331 GO:1900227 {evidence="IDA", xref="PMID:26173909"} @@ -133278,8 +133278,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "CX3CL1" xsd:string property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:12714508"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002327 GO:0008009 {evidence="IDA", xref="PMID:21829356"} property_value: RO:0002327 GO:0008009 {evidence="IGI", xref="PMID:10415068"} +property_value: RO:0002327 GO:0008009 {evidence="IDA", xref="PMID:21829356"} property_value: RO:0002331 GO:0002523 {evidence="IMP", xref="PMID:23125415"} property_value: RO:0002331 GO:0050729 {evidence="IEP", xref="PMID:11777952"} property_value: RO:0002331 GO:0060326 {evidence="IDA", xref="PMID:10415068"} @@ -133902,8 +133902,8 @@ property_value: RO:0002331 GO:0048863 {evidence="IEP", xref="PMID:27749823"} id: https://identifiers.org/uniprot:P83881 name: Large ribosomal subunit protein eL42 is_a: PR:000000001 -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL36A" xsd:string @@ -134038,8 +134038,8 @@ property_value: RO:0002327 GO:0003735 {evidence="IDA", xref="PMID:23636399"} id: https://identifiers.org/uniprot:P84099 name: Large ribosomal subunit protein eL19 is_a: PR:000000001 -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:23500592"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:36517592"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:23500592"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:36517592"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:6993285"} property_value: IAO:0000028 "Rpl19" xsd:string @@ -134782,8 +134782,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0050673 {evidence="IMP", xref="PMID:11002344"} property_value: RO:0002263 GO:0060767 {evidence="IMP", xref="PMID:11002344"} property_value: RO:0002263 GO:0060767 {evidence="IMP", xref="PMID:11839815"} -property_value: RO:0002264 GO:0060442 {evidence="IMP", xref="PMID:11002344"} property_value: RO:0002264 GO:0060442 {evidence="IMP", xref="PMID:10215624"} +property_value: RO:0002264 GO:0060442 {evidence="IMP", xref="PMID:11002344"} property_value: RO:0002264 GO:0060442 {evidence="IMP", xref="PMID:10906459"} property_value: RO:0002264 GO:0060664 {evidence="IMP", xref="PMID:10906459"} property_value: RO:0002331 GO:0008584 {evidence="IEP", xref="PMID:9142502"} @@ -135064,8 +135064,8 @@ property_value: RO:0002264 GO:0001570 {evidence="IMP", xref="PMID:18231602"} property_value: RO:0002264 GO:0001764 {evidence="IMP", xref="PMID:18206388"} property_value: RO:0002264 GO:0021855 {evidence="IMP", xref="PMID:18206388"} property_value: RO:0002264 GO:0035886 {evidence="IMP", xref="PMID:18458156"} -property_value: RO:0002264 GO:0055007 {evidence="IMP", xref="PMID:12397115"} property_value: RO:0002264 GO:0055007 {evidence="IMP", xref="PMID:17234970"} +property_value: RO:0002264 GO:0055007 {evidence="IMP", xref="PMID:12397115"} property_value: RO:0002264 GO:0055015 {evidence="IMP", xref="PMID:18292603"} property_value: RO:0002264 GO:0061325 {evidence="IMP", xref="PMID:16836994"} property_value: RO:0002331 GO:0003253 {evidence="IMP", xref="PMID:12464179"} @@ -135595,8 +135595,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Lama4" xsd:string property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9396756"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9346933"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9614228"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9614228"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28071719"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:22159717"} @@ -136105,8 +136105,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Cd80" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15314074"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:1385153"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15240714"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8566034"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:15568026"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14560001"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18684012"} @@ -136422,8 +136422,8 @@ id: https://identifiers.org/uniprot:Q01102 name: P-selectin is_a: PR:000000001 property_value: IAO:0000028 "Selp" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:23583643"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19349303"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:23583643"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17114491"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:8562500"} property_value: RO:0002162 NCBITaxon:10090 @@ -136811,8 +136811,8 @@ property_value: RO:0002264 GO:0019229 {evidence="IMP", xref="PMID:14609949"} property_value: RO:0002264 GO:0030073 {evidence="IMP", xref="PMID:12881419"} property_value: RO:0002264 GO:0030252 {evidence="IDA", xref="PMID:1385406"} property_value: RO:0002264 GO:0051649 {evidence="IDA", xref="PMID:32109384"} -property_value: RO:0002264 GO:0051649 {evidence="IMP", xref="PMID:15132976"} property_value: RO:0002264 GO:0051649 {evidence="IMP", xref="PMID:12881419"} +property_value: RO:0002264 GO:0051649 {evidence="IMP", xref="PMID:15132976"} property_value: RO:0002327 GO:0086007 {evidence="IDA", xref="PMID:32109384"} [Term] @@ -136843,8 +136843,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q01853 name: Transitional endoplasmic reticulum ATPase is_a: PR:000000001 -property_value: BFO:0000050 GO:0034098 {evidence="IPI", xref="PMID:12847084"} property_value: BFO:0000050 GO:0034098 {evidence="IDA", xref="PMID:10811609"} +property_value: BFO:0000050 GO:0034098 {evidence="IPI", xref="PMID:12847084"} property_value: BFO:0000050 GO:0034098 {evidence="IDA", xref="PMID:17000876"} property_value: BFO:0000050 GO:0036513 {evidence="IDA", xref="PMID:15215856"} property_value: IAO:0000028 "Vcp" xsd:string @@ -137353,8 +137353,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q02543 name: Large ribosomal subunit protein eL20 is_a: PR:000000001 -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} @@ -137504,8 +137504,8 @@ property_value: RO:0001025 GO:0030315 {evidence="IDA", xref="PMID:10444070"} property_value: RO:0001025 GO:0030315 {evidence="IDA", xref="PMID:8943043"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007520 {evidence="IMP", xref="PMID:10949052"} -property_value: RO:0002264 GO:0048741 {evidence="IDA", xref="PMID:8143864"} property_value: RO:0002264 GO:0048741 {evidence="IMP", xref="PMID:8462749"} +property_value: RO:0002264 GO:0048741 {evidence="IDA", xref="PMID:8143864"} property_value: RO:0002264 GO:0048741 {evidence="IMP", xref="PMID:289331"} property_value: RO:0002264 GO:0055001 {evidence="IMP", xref="PMID:5041196"} @@ -137544,8 +137544,8 @@ id: https://identifiers.org/uniprot:Q02878 name: Large ribosomal subunit protein eL6 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL6" xsd:string @@ -138330,8 +138330,8 @@ property_value: RO:0002264 GO:0098528 {evidence="IGI", xref="PMID:19293339"} property_value: RO:0002432 GO:0005604 {evidence="IDA", xref="PMID:31837950"} property_value: RO:0002432 GO:0016529 {evidence="IMP", xref="PMID:22024752"} property_value: RO:0002432 GO:0030016 {evidence="IMP", xref="PMID:20716577"} -property_value: RO:0002432 GO:0031012 {evidence="IDA", xref="PMID:19248115"} property_value: RO:0002432 GO:0031012 {evidence="IDA", xref="PMID:23300779"} +property_value: RO:0002432 GO:0031012 {evidence="IDA", xref="PMID:19248115"} property_value: RO:0002432 GO:0031012 {evidence="IMP", xref="PMID:20951202"} [Term] @@ -138667,8 +138667,8 @@ id: https://identifiers.org/uniprot:Q05707 name: Collagen alpha-1(XIV) chain is_a: PR:000000001 property_value: IAO:0000028 "COL14A1" xsd:string -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -138714,12 +138714,12 @@ name: Basement membrane-specific heparan sulfate proteoglycan core protein is_a: PR:000000001 property_value: IAO:0000028 "Hspg2" xsd:string property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15381701"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:10352025"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:11787818"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12588956"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:10579729"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12588956"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15928325"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:11802174"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:7670489"} @@ -139546,8 +139546,8 @@ property_value: RO:0002264 GO:0002352 {evidence="IGI", xref="PMID:16055554"} property_value: RO:0002264 GO:0002358 {evidence="IMP", xref="PMID:7569956"} property_value: RO:0002264 GO:0007281 {evidence="IGI", xref="PMID:10894153"} property_value: RO:0002264 GO:0007283 {evidence="IMP", xref="PMID:7569956"} -property_value: RO:0002264 GO:0007283 {evidence="IGI", xref="PMID:10894153"} property_value: RO:0002264 GO:0007283 {evidence="IMP", xref="PMID:11906913"} +property_value: RO:0002264 GO:0007283 {evidence="IGI", xref="PMID:10894153"} property_value: RO:0002264 GO:0007548 {evidence="IMP", xref="PMID:15342910"} property_value: RO:0002264 GO:0008283 {evidence="IGI", xref="PMID:10762311"} property_value: RO:0002264 GO:0008584 {evidence="IMP", xref="PMID:16270031"} @@ -139853,13 +139853,13 @@ property_value: IAO:0000028 "GOLGA2" xsd:string property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:17724343"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:15229288"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:22792322"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:20605918"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:22792322"} property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:24648492"} property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:21525244"} property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:22802641"} -property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:23814182"} property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:18166528"} +property_value: RO:0001025 GO:0005801 {evidence="IDA", xref="PMID:23814182"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0007098 {evidence="IDA", xref="PMID:19109421"} property_value: RO:0002331 GO:0007098 {evidence="IMP", xref="PMID:18045989"} @@ -140034,8 +140034,8 @@ property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:16476422"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:15668330"} property_value: RO:0002263 GO:0050673 {evidence="IMP", xref="PMID:15668330"} property_value: RO:0002263 GO:0072089 {evidence="IMP", xref="PMID:15668330"} -property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:15389629"} property_value: RO:0002264 GO:0001649 {evidence="IGI", xref="PMID:16099986"} +property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:15389629"} property_value: RO:0002264 GO:0001649 {evidence="IGI", xref="PMID:15565649"} property_value: RO:0002264 GO:0002051 {evidence="IGI", xref="PMID:15150273"} property_value: RO:0002264 GO:0002062 {evidence="IGI", xref="PMID:16476422"} @@ -142584,8 +142584,8 @@ id: https://identifiers.org/uniprot:Q13795 name: ADP-ribosylation factor-related protein 1 is_a: PR:000000001 property_value: IAO:0000028 "ARFRP1" xsd:string -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:16129887"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0042147 {evidence="IMP", xref="PMID:16129887"} @@ -142862,8 +142862,8 @@ property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:22952693"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27068509"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -143261,8 +143261,8 @@ id: https://identifiers.org/uniprot:Q14442 name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit H is_a: PR:000000001 property_value: BFO:0000050 GO:0000506 {evidence="IDA", xref="PMID:16162815"} -property_value: BFO:0000050 GO:0000506 {evidence="IPI", xref="PMID:16162815"} property_value: BFO:0000050 GO:0000506 {evidence="IDA", xref="PMID:10944123"} +property_value: BFO:0000050 GO:0000506 {evidence="IPI", xref="PMID:16162815"} property_value: BFO:0000050 GO:0005789 {evidence="IDA", xref="PMID:16162815"} property_value: IAO:0000028 "PIGH" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -143320,8 +143320,8 @@ property_value: IAO:0000028 "SCN5A" xsd:string property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:22529811"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19943616"} -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19666841"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:14500339"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19666841"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:19943616"} property_value: RO:0001025 GO:0030315 {evidence="IDA", xref="PMID:15579534"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:17060380"} @@ -143626,8 +143626,8 @@ property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:12429738"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:8617200"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23979707"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:16157329"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -143930,8 +143930,8 @@ property_value: RO:0001025 GO:0097228 {evidence="IDA", xref="PMID:17244819"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0060294 {evidence="IMP", xref="PMID:17244819"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} @@ -144023,13 +144023,13 @@ is_a: PR:000000001 property_value: IAO:0000028 "Kcnc2" xsd:string property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:10903572"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:10903572"} -property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:10531438"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:12000114"} +property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:10531438"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:15317859"} property_value: RO:0001025 GO:0032809 {evidence="IDA", xref="PMID:10531438"} property_value: RO:0001025 GO:0042734 {evidence="IDA", xref="PMID:10531438"} -property_value: RO:0001025 GO:0043204 {evidence="IDA", xref="PMID:12000114"} property_value: RO:0001025 GO:0043204 {evidence="IDA", xref="PMID:10531438"} +property_value: RO:0001025 GO:0043204 {evidence="IDA", xref="PMID:12000114"} property_value: RO:0001025 GO:0044297 {evidence="IDA", xref="PMID:15317859"} property_value: RO:0001025 GO:0045211 {evidence="IDA", xref="PMID:10531438"} property_value: RO:0002162 NCBITaxon:10090 @@ -144503,8 +144503,8 @@ name: Early endosome antigen 1 is_a: PR:000000001 property_value: IAO:0000028 "EEA1" xsd:string property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:12536145"} -property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:15229288"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:25327288"} +property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:15229288"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:22719997"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:16542649"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:18767904"} @@ -144807,8 +144807,8 @@ property_value: IAO:0000028 "ANGPT1" xsd:string property_value: RO:0001025 GO:0005902 {evidence="IDA", xref="PMID:19424712"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0030210 {evidence="IDA", xref="PMID:19297368"} -property_value: RO:0002331 GO:0043116 {evidence="IDA", xref="PMID:19297368"} property_value: RO:0002331 GO:0043116 {evidence="IDA", xref="PMID:14978158"} +property_value: RO:0002331 GO:0043116 {evidence="IDA", xref="PMID:19297368"} property_value: RO:0002331 GO:1905605 {evidence="IMP", xref="PMID:19148554"} [Term] @@ -145022,8 +145022,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "TGFBI" xsd:string property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:19478074"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23979707"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:27559042"} property_value: RO:0002162 NCBITaxon:9606 @@ -147102,8 +147102,8 @@ property_value: RO:0002264 GO:0014904 {evidence="IMP", xref="PMID:31391242"} id: https://identifiers.org/uniprot:Q3B726 name: DNA-directed RNA polymerase I subunit RPA43 is_a: PR:000000001 -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR1F" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -147333,8 +147333,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q3SYG4 name: Protein PTHB1 is_a: PR:000000001 -property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} +property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} @@ -147825,8 +147825,8 @@ name: Calponin-homology (CH) domain-containing protein is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0002162 NCBITaxon:10090 @@ -148059,8 +148059,8 @@ id: https://identifiers.org/uniprot:Q3TXX4 name: Vesicular glutamate transporter 1 is_a: PR:000000001 property_value: IAO:0000028 "Slc17a7" xsd:string -property_value: RO:0001025 GO:0008021 {evidence="IDA", xref="PMID:21378974"} property_value: RO:0001025 GO:0008021 {evidence="IDA", xref="PMID:15579147"} +property_value: RO:0001025 GO:0008021 {evidence="IDA", xref="PMID:21378974"} property_value: RO:0001025 GO:0030672 {evidence="IDA", xref="PMID:15860731"} property_value: RO:0001025 GO:0044300 {evidence="IDA", xref="PMID:23791195"} property_value: RO:0001025 GO:0048786 {evidence="IDA", xref="PMID:18986540"} @@ -149394,8 +149394,8 @@ id: https://identifiers.org/uniprot:Q3UQS9 name: Myomesin-2 is_a: PR:000000001 property_value: IAO:0000028 "Myom2" xsd:string -property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20215401"} +property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -149905,8 +149905,8 @@ name: Calponin-homology (CH) domain-containing protein is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0002162 NCBITaxon:10090 @@ -150063,8 +150063,8 @@ property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q3V0Q7 @@ -150698,8 +150698,8 @@ property_value: RO:0002264 GO:0016322 {evidence="IMP", xref="PMID:19805386"} property_value: RO:0002264 GO:0030182 {evidence="IGI", xref="PMID:9883720"} property_value: RO:0002264 GO:0046632 {evidence="IGI", xref="PMID:18025176"} property_value: RO:0002264 GO:0048813 {evidence="IGI", xref="PMID:23365224"} -property_value: RO:0002264 GO:0048813 {evidence="IMP", xref="PMID:23365224"} property_value: RO:0002264 GO:0048813 {evidence="IGI", xref="PMID:22357865"} +property_value: RO:0002264 GO:0048813 {evidence="IMP", xref="PMID:23365224"} property_value: RO:0002264 GO:0051649 {evidence="IGI", xref="PMID:23100514"} property_value: RO:0002264 GO:0051649 {evidence="IMP", xref="PMID:22665498"} property_value: RO:0002264 GO:0060020 {evidence="IGI", xref="PMID:20980600"} @@ -150731,10 +150731,10 @@ property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -151956,8 +151956,8 @@ property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q5BN46 @@ -155699,8 +155699,8 @@ id: https://identifiers.org/uniprot:Q60675 name: Laminin subunit alpha-2 is_a: PR:000000001 property_value: IAO:0000028 "Lama2" xsd:string -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9524190"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9396756"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12051813"} @@ -156676,16 +156676,16 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0043259 {evidence="IPI", xref="PMID:9299121"} property_value: IAO:0000028 "Lama5" xsd:string property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:19651211"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9735344"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12051813"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9735344"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:11507772"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9396756"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12743034"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15895400"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:22665518"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:12921739"} -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9299121"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:8707838"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:9299121"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:14568553"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:16886065"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} @@ -156707,8 +156707,8 @@ name: Muscle, skeletal receptor tyrosine-protein kinase is_a: PR:000000001 property_value: IAO:0000028 "Musk" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:18957220"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:20053883"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:19038220"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:20053883"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} property_value: RO:0001025 GO:0045211 {evidence="IDA", xref="PMID:19038220"} property_value: RO:0002162 NCBITaxon:10090 @@ -157666,9 +157666,9 @@ property_value: RO:0001025 GO:0044295 {evidence="IDA", xref="PMID:18716223"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0001935 {evidence="IGI", xref="PMID:9159163"} property_value: RO:0002263 GO:0001935 {evidence="IMP", xref="PMID:9060821"} +property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:18656477"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11381263"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17615359"} -property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:18656477"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17875695"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11385109"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:9506519"} @@ -157681,10 +157681,10 @@ property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:10783317"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:8945508"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:9135000"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:10626800"} -property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11606502"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:16007074"} -property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17299058"} +property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11606502"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:15550389"} +property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17299058"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:18056981"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11731407"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:15198980"} @@ -157701,8 +157701,8 @@ property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:11478486"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11274413"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:9927046"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:10969066"} -property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:9515784"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:18258607"} +property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:9515784"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11533709"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:7954428"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17956267"} @@ -157716,13 +157716,13 @@ property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:17596282"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:16638711"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:15380519"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17596282"} -property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:15958588"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:18719115"} +property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:15958588"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:11559569"} property_value: RO:0002263 GO:0008283 {evidence="IMP", xref="PMID:10334197"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11773073"} -property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:8978063"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:11197776"} +property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:8978063"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:8978062"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:18644872"} property_value: RO:0002263 GO:0008283 {evidence="IGI", xref="PMID:17671182"} @@ -158359,8 +158359,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Fbn1" xsd:string property_value: RO:0001025 GO:0001527 {evidence="IDA", xref="PMID:26405179"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28071719"} -property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:24039232"} property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:17099216"} +property_value: RO:0001025 GO:0062023 {evidence="IDA", xref="PMID:24039232"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:23658023"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:22159717"} property_value: RO:0002162 NCBITaxon:10090 @@ -158384,8 +158384,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Foxc1" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0001541 {evidence="IMP", xref="PMID:16412416"} -property_value: RO:0002264 GO:0001974 {evidence="IGI", xref="PMID:16678147"} property_value: RO:0002264 GO:0001974 {evidence="IGI", xref="PMID:11562355"} +property_value: RO:0002264 GO:0001974 {evidence="IGI", xref="PMID:16678147"} property_value: RO:0002264 GO:0008354 {evidence="IMP", xref="PMID:16412416"} property_value: RO:0002264 GO:0014032 {evidence="IGI", xref="PMID:16839542"} property_value: RO:0002264 GO:0048762 {evidence="IMP", xref="PMID:9635428"} @@ -158600,14 +158600,14 @@ property_value: RO:0002264 GO:0042711 {evidence="IMP", xref="PMID:17360497"} property_value: RO:0002264 GO:0042711 {evidence="IMP", xref="PMID:7809078"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:8738226"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:12930822"} -property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:16962565"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:8294904"} +property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:16962565"} property_value: RO:0002327 GO:0001588 {evidence="IMP", xref="PMID:13679419"} property_value: RO:0002327 GO:0001588 {evidence="IMP", xref="PMID:7809078"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:7566118"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:7954836"} -property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:11069937"} property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:12097513"} +property_value: RO:0002327 GO:0001588 {evidence="IDA", xref="PMID:11069937"} property_value: RO:0002327 GO:0001588 {evidence="IMP", xref="PMID:9387887"} property_value: RO:0002327 GO:0004952 {evidence="IDA", xref="PMID:18671743"} property_value: RO:0002331 GO:0099171 {evidence="IDA", xref="PMID:22586226"} @@ -158784,8 +158784,8 @@ name: Chromobox protein homolog 5 is_a: PR:000000001 property_value: IAO:0000028 "Cbx5" xsd:string property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:15070898"} -property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:14730304"} property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:10318760"} +property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:14730304"} property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:15998811"} property_value: RO:0001025 GO:0005721 {evidence="IDA", xref="PMID:20110566"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:10318760"} @@ -159271,10 +159271,10 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:22396656"} property_value: RO:0002331 GO:0007288 {evidence="IMP", xref="PMID:22396656"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} @@ -159322,10 +159322,10 @@ property_value: BFO:0000050 GO:0015935 {evidence="IDA", xref="PMID:18809582"} property_value: IAO:0000028 "Npm1" xsd:string property_value: RO:0001025 GO:0001652 {evidence="IDA", xref="PMID:15485902"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:10716735"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12374805"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15485902"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16297385"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:12374805"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16855206"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16297385"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:2100262"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15596447"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:15615785"} @@ -159636,8 +159636,8 @@ property_value: RO:0001025 GO:0008021 {evidence="IDA", xref="PMID:16520334"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17018287"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:23791195"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:15748150"} -property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17114649"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17093100"} +property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17114649"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:29490264"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:21144999"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:15317856"} @@ -159985,8 +159985,8 @@ property_value: RO:0002264 GO:0008283 {evidence="IMP", xref="PMID:20515681"} property_value: RO:0002264 GO:0072137 {evidence="IGI", xref="PMID:26116661"} property_value: RO:0002331 GO:0003337 {evidence="IEP", xref="PMID:10322633"} property_value: RO:0002331 GO:0007501 {evidence="IDA", xref="PMID:17785448"} -property_value: RO:0002331 GO:0072038 {evidence="IDA", xref="PMID:24598167"} property_value: RO:0002331 GO:0072038 {evidence="IMP", xref="PMID:21350016"} +property_value: RO:0002331 GO:0072038 {evidence="IDA", xref="PMID:24598167"} property_value: RO:0002331 GO:0072038 {evidence="IDA", xref="PMID:22902740"} property_value: RO:0002331 GO:0072038 {evidence="IMP", xref="PMID:18682239"} property_value: RO:0002331 GO:0072161 {evidence="IMP", xref="PMID:17036046"} @@ -160016,9 +160016,9 @@ property_value: RO:0001025 GO:0030017 {evidence="IDA", xref="PMID:12651156"} property_value: RO:0001025 GO:0030017 {evidence="IDA", xref="PMID:16702235"} property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:22562206"} property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:18310078"} +property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20215401"} property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:18177667"} -property_value: RO:0001025 GO:0031430 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -160977,12 +160977,12 @@ property_value: BFO:0000050 GO:0005930 {evidence="IDA", xref="PMID:21209331"} property_value: IAO:0000028 "Arl13b" xsd:string property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:23351563"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:24336288"} -property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:22179047"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:22689656"} +property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:22179047"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:23153492"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:21209331"} -property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:20159594"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:31887266"} +property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:20159594"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:29487109"} property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:17488627"} property_value: RO:0001025 GO:0031514 {evidence="IDA", xref="PMID:24336288"} @@ -161299,8 +161299,8 @@ name: Hematopoietic progenitor cell antigen CD34 is_a: PR:000000001 property_value: IAO:0000028 "Cd34" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10943842"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12900455"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19360001"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12900455"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:21708977"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:17882221"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12714519"} @@ -162004,8 +162004,8 @@ property_value: RO:0002331 GO:0002362 {evidence="IMP", xref="PMID:18195075"} property_value: RO:0002331 GO:0002364 {evidence="IMP", xref="PMID:18195075"} property_value: RO:0002331 GO:0021895 {evidence="IMP", xref="PMID:25527292"} property_value: RO:0002331 GO:0043373 {evidence="IMP", xref="PMID:18195075"} -property_value: RO:0002331 GO:0043375 {evidence="IMP", xref="PMID:11850626"} property_value: RO:0002331 GO:0043375 {evidence="IMP", xref="PMID:15078895"} +property_value: RO:0002331 GO:0043375 {evidence="IMP", xref="PMID:11850626"} property_value: RO:0002331 GO:1902232 {evidence="IMP", xref="PMID:18195075"} [Term] @@ -162737,8 +162737,8 @@ property_value: BFO:0000050 GO:0036038 {evidence="IDA", xref="PMID:21725307"} property_value: IAO:0000028 "Cep290" xsd:string property_value: RO:0001025 GO:0001750 {evidence="IDA", xref="PMID:23943788"} property_value: RO:0001025 GO:0032391 {evidence="IDA", xref="PMID:16682973"} -property_value: RO:0001025 GO:0032391 {evidence="IDA", xref="PMID:23943788"} property_value: RO:0001025 GO:0032391 {evidence="IDA", xref="PMID:16632484"} +property_value: RO:0001025 GO:0032391 {evidence="IDA", xref="PMID:23943788"} property_value: RO:0001025 GO:0035869 {evidence="IDA", xref="PMID:22446187"} property_value: RO:0001025 GO:0120205 {evidence="IDA", xref="PMID:29899041"} property_value: RO:0001025 GO:0120206 {evidence="IDA", xref="PMID:29899041"} @@ -163619,8 +163619,8 @@ name: Nipped-B-like protein is_a: PR:000000001 property_value: IAO:0000028 "NIPBL" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0007064 {evidence="IDA", xref="PMID:22628566"} property_value: RO:0002331 GO:0007064 {evidence="IMP", xref="PMID:16100726"} +property_value: RO:0002331 GO:0007064 {evidence="IDA", xref="PMID:22628566"} property_value: RO:0002331 GO:0034088 {evidence="IMP", xref="PMID:16682347"} property_value: RO:0002331 GO:0035261 {evidence="IMP", xref="PMID:19242925"} property_value: RO:0002331 GO:0035261 {evidence="IMP", xref="PMID:15146186"} @@ -164192,8 +164192,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Efcab6" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} @@ -164494,11 +164494,11 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:18496528"} property_value: RO:0002264 GO:0006611 {evidence="IDA", xref="PMID:11796723"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:19952108"} -property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:11092755"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:19699716"} +property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:11092755"} property_value: RO:0002264 GO:0006611 {evidence="IDA", xref="PMID:12446771"} -property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:15767664"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:16316410"} +property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:15767664"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:16236793"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:19064729"} property_value: RO:0002264 GO:0006611 {evidence="IMP", xref="PMID:16459298"} @@ -164687,12 +164687,12 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q6P8Y0 @@ -164700,8 +164700,8 @@ name: Cilia- and flagella-associated protein 161 is_a: PR:000000001 property_value: IAO:0000028 "Cfap161" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} @@ -165899,8 +165899,8 @@ name: Relaxin receptor 1 is_a: PR:000000001 property_value: IAO:0000028 "Rxfp1" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0007567 {evidence="IMP", xref="PMID:14701741"} property_value: RO:0002264 GO:0007567 {evidence="IMP", xref="PMID:15256493"} +property_value: RO:0002264 GO:0007567 {evidence="IMP", xref="PMID:14701741"} property_value: RO:0002264 GO:0036446 {evidence="IMP", xref="PMID:19073841"} [Term] @@ -166115,15 +166115,15 @@ property_value: RO:0001025 GO:0097728 {evidence="IDA", xref="PMID:29257953"} property_value: RO:0001025 GO:0097729 {evidence="IDA", xref="PMID:29257953"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0030317 {evidence="IMP", xref="PMID:29733335"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} [Term] id: https://identifiers.org/uniprot:Q6STE5 @@ -166816,15 +166816,15 @@ is_a: PR:000000001 property_value: IAO:0000028 "Tekt3" xsd:string property_value: RO:0001025 GO:0001669 {evidence="IDA", xref="PMID:37709195"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IMP", xref="PMID:18951373"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0004034 GO:0060378 {evidence="IGI", xref="PMID:18951373"} @@ -168787,8 +168787,8 @@ id: https://identifiers.org/uniprot:Q7TNH6 name: Nephrocystin-3 is_a: PR:000000001 property_value: IAO:0000028 "Nphp3" xsd:string -property_value: RO:0001025 GO:0097543 {evidence="IDA", xref="PMID:29395339"} property_value: RO:0001025 GO:0097543 {evidence="IDA", xref="PMID:20169535"} +property_value: RO:0001025 GO:0097543 {evidence="IDA", xref="PMID:29395339"} property_value: RO:0001025 GO:0097546 {evidence="IDA", xref="PMID:20169535"} property_value: RO:0002162 NCBITaxon:10090 @@ -168973,8 +168973,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:27914912"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0097546 {evidence="IDA", xref="PMID:27914912"} property_value: RO:0002432 GO:0160110 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160110 {evidence="IDA", xref="PMID:37989994"} @@ -170024,8 +170024,8 @@ property_value: RO:0001025 GO:0001917 {evidence="IDA", xref="PMID:17906286"} property_value: RO:0001025 GO:0032391 {evidence="IDA", xref="PMID:17906286"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:17906286"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0060113 {evidence="IMP", xref="PMID:1927362"} property_value: RO:0002264 GO:0060113 {evidence="IMP", xref="PMID:1763621"} +property_value: RO:0002264 GO:0060113 {evidence="IMP", xref="PMID:1927362"} property_value: RO:0002264 GO:0060113 {evidence="IMP", xref="PMID:12588793"} property_value: RO:0002264 GO:0060113 {evidence="IMP", xref="PMID:1442008"} property_value: RO:0002264 GO:0060122 {evidence="IMP", xref="PMID:18339676"} @@ -170035,8 +170035,8 @@ id: https://identifiers.org/uniprot:Q80T14 name: Extracellular matrix organizing protein FRAS1 is_a: PR:000000001 property_value: IAO:0000028 "Fras1" xsd:string -property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15345741"} +property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:18757743"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:17251066"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:16880404"} property_value: RO:0001025 GO:0005604 {evidence="IDA", xref="PMID:15623520"} @@ -171010,8 +171010,8 @@ id: https://identifiers.org/uniprot:Q80WJ7 name: Protein LYRIC is_a: PR:000000001 property_value: IAO:0000028 "Mtdh" xsd:string -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19433866"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:14980505"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:19433866"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:14980505"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:19433866"} property_value: RO:0002162 NCBITaxon:10090 @@ -171546,8 +171546,8 @@ id: https://identifiers.org/uniprot:Q80Z19 name: Mucin-2 is_a: PR:000000001 property_value: IAO:0000028 "Muc2" xsd:string -property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:11352827"} property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:19411636"} +property_value: RO:0001025 GO:0031012 {evidence="IDA", xref="PMID:11352827"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:22159717"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0002068 {evidence="IMP", xref="PMID:11872843"} @@ -171619,8 +171619,8 @@ property_value: RO:0002264 GO:0017145 {evidence="IDA", xref="PMID:12787505"} property_value: RO:0002264 GO:0019827 {evidence="IGI", xref="PMID:17938240"} property_value: RO:0002264 GO:0035019 {evidence="IMP", xref="PMID:16767105"} property_value: RO:0002264 GO:0035019 {evidence="IDA", xref="PMID:16801560"} -property_value: RO:0002264 GO:0035019 {evidence="IMP", xref="PMID:20720539"} property_value: RO:0002264 GO:0035019 {evidence="IMP", xref="PMID:12787504"} +property_value: RO:0002264 GO:0035019 {evidence="IMP", xref="PMID:20720539"} property_value: RO:0002264 GO:0048863 {evidence="IDA", xref="PMID:20123909"} property_value: RO:0002264 GO:0048863 {evidence="IMP", xref="PMID:16894029"} property_value: RO:0002331 GO:0008406 {evidence="IEP", xref="PMID:15108323"} @@ -171908,8 +171908,8 @@ name: Calponin-homology (CH) domain-containing protein is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} property_value: RO:0002162 NCBITaxon:10090 @@ -172037,8 +172037,8 @@ id: https://identifiers.org/uniprot:Q811C1 name: Utrophin short isoform, Up109 is_a: PR:000000001 property_value: IAO:0000028 "Utrn" xsd:string -property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:12808150"} +property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:9674605"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:17119023"} property_value: RO:0001025 GO:0031594 {evidence="IDA", xref="PMID:1461282"} property_value: RO:0001025 GO:0042383 {evidence="IDA", xref="PMID:12808150"} @@ -172734,8 +172734,8 @@ id: https://identifiers.org/uniprot:Q86V48 name: Leucine zipper protein 1 is_a: PR:000000001 property_value: IAO:0000028 "LUZP1" xsd:string -property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:32496561"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:32553112"} +property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:32496561"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:38009294"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:32496561"} property_value: RO:0002162 NCBITaxon:9606 @@ -174414,8 +174414,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Hook1" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007286 {evidence="IMP", xref="PMID:12075009"} -property_value: RO:0002264 GO:1905198 {evidence="IMP", xref="PMID:16540102"} property_value: RO:0002264 GO:1905198 {evidence="IMP", xref="PMID:9674995"} +property_value: RO:0002264 GO:1905198 {evidence="IMP", xref="PMID:16540102"} [Term] id: https://identifiers.org/uniprot:Q8BIT2 @@ -174803,8 +174803,8 @@ property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:14668490"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:23926254"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:23918928"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:20943658"} -property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:17716972"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:26965651"} +property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:17716972"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:17003038"} property_value: RO:0001025 GO:0005769 {evidence="IDA", xref="PMID:24334765"} property_value: RO:0001025 GO:0044308 {evidence="IDA", xref="PMID:23303939"} @@ -175199,8 +175199,8 @@ name: Serine/threonine-protein kinase VRK2 is_a: PR:000000001 property_value: IAO:0000028 "Vrk2" xsd:string property_value: RO:0001025 GO:0005635 {evidence="IDA", xref="PMID:31142202"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:31142202"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:14645249"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:31142202"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -175330,8 +175330,8 @@ name: C-type lectin domain family 4 member G is_a: PR:000000001 property_value: IAO:0000028 "Clec4g" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002263 GO:0002456 {evidence="IMP", xref="PMID:19632227"} property_value: RO:0002263 GO:0002456 {evidence="IMP", xref="PMID:23487419"} +property_value: RO:0002263 GO:0002456 {evidence="IMP", xref="PMID:19632227"} property_value: RO:0002263 GO:0033080 {evidence="IMP", xref="PMID:23487419"} property_value: RO:0002263 GO:0046633 {evidence="IMP", xref="PMID:23487419"} property_value: RO:0002264 GO:0002710 {evidence="IDA", xref="PMID:19632227"} @@ -175958,8 +175958,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} @@ -176168,8 +176168,8 @@ name: Ammonium transporter Rh type B is_a: PR:000000001 property_value: IAO:0000028 "Rhbg" xsd:string property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:12388412"} -property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:15798090"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:12595489"} +property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:15798090"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:16077082"} property_value: RO:0002162 NCBITaxon:10090 @@ -176996,8 +176996,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Slc9a9" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:35716776"} -property_value: RO:0002331 GO:0051453 {evidence="IDA", xref="PMID:35716776"} property_value: RO:0002331 GO:0051453 {evidence="IDA", xref="PMID:17005858"} +property_value: RO:0002331 GO:0051453 {evidence="IDA", xref="PMID:35716776"} [Term] id: https://identifiers.org/uniprot:Q8BZ03 @@ -178218,8 +178218,8 @@ property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32913000"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32911480"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32911481"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:24077100"} -property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:23258413"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:29426904"} +property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:23258413"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:23929945"} property_value: RO:0002331 GO:0140896 {evidence="IDA", xref="PMID:39322678"} @@ -179114,8 +179114,8 @@ property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -179760,8 +179760,8 @@ property_value: RO:0001025 GO:0120199 {evidence="IDA", xref="PMID:28650316"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0007608 {evidence="IMP", xref="PMID:22057188"} property_value: RO:0002331 GO:0050911 {evidence="IMP", xref="PMID:28053034"} -property_value: RO:0002331 GO:0097186 {evidence="IMP", xref="PMID:23375655"} property_value: RO:0002331 GO:0097186 {evidence="IMP", xref="PMID:27752731"} +property_value: RO:0002331 GO:0097186 {evidence="IMP", xref="PMID:23375655"} property_value: RO:0002432 GO:0016324 {evidence="IDA", xref="PMID:27752731"} [Term] @@ -179789,8 +179789,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Piwil4" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007283 {evidence="IMP", xref="PMID:25503965"} -property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:17395546"} property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:18381894"} +property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:17395546"} property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:22020280"} [Term] @@ -180660,8 +180660,8 @@ name: Adipocyte enhancer-binding protein 1 is_a: PR:000000001 property_value: IAO:0000028 "AEBP1" xsd:string property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:25037231"} -property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28675934"} +property_value: RO:0001025 GO:0062023 {evidence="HDA", xref="PMID:28327460"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:20551380"} @@ -181019,8 +181019,8 @@ property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:18687675"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:12686563"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19520866"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:12368295"} -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19666466"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:18687675"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19666466"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0062023 {evidence="HDA", xref="PMID:28327460"} @@ -181089,8 +181089,8 @@ id: https://identifiers.org/uniprot:Q8IWZ6 name: BBSome complex member BBS7 is_a: PR:000000001 property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} -property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} +property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} property_value: IAO:0000028 "BBS7" xsd:string @@ -181930,8 +181930,8 @@ property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:23333501"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:26996322"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002263 GO:0043616 {evidence="IMP", xref="PMID:21703454"} -property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:26996322"} property_value: RO:0002264 GO:0001649 {evidence="IGI", xref="PMID:22771375"} +property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:26996322"} property_value: RO:0002264 GO:0001649 {evidence="IMP", xref="PMID:22771375"} property_value: RO:0002264 GO:0002062 {evidence="IGI", xref="PMID:23333501"} property_value: RO:0002264 GO:0002062 {evidence="IMP", xref="PMID:23333501"} @@ -183500,8 +183500,8 @@ id: https://identifiers.org/uniprot:Q8N0W4 name: Neuroligin-4, X-linked is_a: PR:000000001 property_value: IAO:0000028 "NLGN4X" xsd:string -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:17292328"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:15150161"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:17292328"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:19726642"} property_value: RO:0001025 GO:0030425 {evidence="IDA", xref="PMID:19726642"} property_value: RO:0002162 NCBITaxon:9606 @@ -183885,8 +183885,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q8N3I7 name: BBSome complex member BBS5 is_a: PR:000000001 -property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} +property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} @@ -184496,8 +184496,8 @@ property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:23929945"} property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:23258413"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:26046437"} -property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:35438208"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:24077100"} +property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:35438208"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:28363908"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32817552"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32911482"} @@ -185528,8 +185528,8 @@ id: https://identifiers.org/uniprot:Q8NFJ9 name: BBSome complex member BBS1 is_a: PR:000000001 property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} -property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} +property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} property_value: IAO:0000028 "BBS1" xsd:string @@ -186741,8 +186741,8 @@ property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:30333321"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:19723628"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002327 GO:0015106 {evidence="IMP", xref="PMID:12736153"} -property_value: RO:0002327 GO:0140900 {evidence="IMP", xref="PMID:19723628"} property_value: RO:0002327 GO:0140900 {evidence="IDA", xref="PMID:12736153"} +property_value: RO:0002327 GO:0140900 {evidence="IMP", xref="PMID:19723628"} property_value: RO:0002331 GO:0001696 {evidence="IDA", xref="PMID:12736153"} [Term] @@ -187046,8 +187046,8 @@ property_value: RO:0001025 GO:0097233 {evidence="IDA", xref="PMID:14982840"} property_value: RO:0001025 GO:0097233 {evidence="IDA", xref="PMID:11940594"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0043129 {evidence="IMP", xref="PMID:17267394"} -property_value: RO:0002331 GO:0043129 {evidence="IMP", xref="PMID:28034695"} property_value: RO:0002331 GO:0043129 {evidence="IMP", xref="PMID:17142808"} +property_value: RO:0002331 GO:0043129 {evidence="IMP", xref="PMID:28034695"} property_value: RO:0002331 GO:0043129 {evidence="IMP", xref="PMID:17577581"} [Term] @@ -187554,8 +187554,8 @@ name: Tetratricopeptide repeat protein 8 is_a: PR:000000001 property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} -property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:20080638"} +property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} property_value: IAO:0000028 "TTC8" xsd:string property_value: RO:0001025 GO:0005929 {evidence="IDA", xref="PMID:14520415"} @@ -188283,8 +188283,8 @@ name: Anion exchange transporter is_a: PR:000000001 property_value: IAO:0000028 "SLC26A7" xsd:string property_value: RO:0001025 GO:0005768 {evidence="IDA", xref="PMID:16524946"} -property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:30333321"} property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:32119864"} +property_value: RO:0001025 GO:0016323 {evidence="IDA", xref="PMID:30333321"} property_value: RO:0001025 GO:0016323 {evidence="IMP", xref="PMID:16524946"} property_value: RO:0001025 GO:0016324 {evidence="IDA", xref="PMID:31372509"} property_value: RO:0002162 NCBITaxon:9606 @@ -189057,8 +189057,8 @@ name: E3 ubiquitin-protein ligase UHRF1 is_a: PR:000000001 property_value: IAO:0000028 "Uhrf1" xsd:string property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:17994007"} -property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:18692478"} property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:21489993"} +property_value: RO:0001025 GO:0000792 {evidence="IDA", xref="PMID:18692478"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -189514,8 +189514,8 @@ name: Olfactory receptor 5AN6 is_a: PR:000000001 property_value: IAO:0000028 "Or5an6" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002327 GO:0004984 {evidence="IMP", xref="PMID:27098692"} property_value: RO:0002327 GO:0004984 {evidence="IDA", xref="PMID:25411495"} +property_value: RO:0002327 GO:0004984 {evidence="IMP", xref="PMID:27098692"} property_value: RO:0002327 GO:0004984 {evidence="IMP", xref="PMID:30038239"} property_value: RO:0002331 GO:0007608 {evidence="IMP", xref="PMID:30038239"} property_value: RO:0002331 GO:0007608 {evidence="IMP", xref="PMID:27098692"} @@ -190417,8 +190417,8 @@ name: B-cell linker protein is_a: PR:000000001 property_value: IAO:0000028 "BLNK" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0050853 {evidence="IDA", xref="PMID:9697839"} property_value: RO:0002331 GO:0050853 {evidence="IMP", xref="PMID:11606584"} +property_value: RO:0002331 GO:0050853 {evidence="IDA", xref="PMID:9697839"} [Term] id: https://identifiers.org/uniprot:Q8WV41 @@ -191050,11 +191050,11 @@ id: https://identifiers.org/uniprot:Q91V08 name: C-type lectin domain family 2 member D is_a: PR:000000001 property_value: IAO:0000028 "Clec2d" xsd:string -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12858173"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:14990792"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0042270 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002264 GO:0042270 {evidence="IDA", xref="PMID:14990792"} +property_value: RO:0002264 GO:0042270 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002264 GO:0042270 {evidence="IGI", xref="PMID:19535641"} [Term] @@ -191154,8 +191154,8 @@ property_value: IAO:0000028 "Ttll1" xsd:string property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:17499049"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0002395 {evidence="IMP", xref="PMID:29440671"} -property_value: RO:0002264 GO:0007288 {evidence="IMP", xref="PMID:20498047"} property_value: RO:0002264 GO:0007288 {evidence="IMP", xref="PMID:20442420"} +property_value: RO:0002264 GO:0007288 {evidence="IMP", xref="PMID:20498047"} property_value: RO:0002264 GO:0021702 {evidence="IGI", xref="PMID:30420556"} property_value: RO:0002264 GO:0030317 {evidence="IMP", xref="PMID:20442420"} property_value: RO:0002264 GO:0120197 {evidence="IMP", xref="PMID:29440671"} @@ -191319,8 +191319,8 @@ property_value: RO:0002331 GO:0070050 {evidence="IDA", xref="PMID:32350463"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:32350463"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:34006824"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:29033131"} -property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:27846608"} property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:19158676"} +property_value: RO:0002331 GO:0070269 {evidence="IDA", xref="PMID:27846608"} [Term] id: https://identifiers.org/uniprot:Q91VJ5 @@ -191961,8 +191961,8 @@ property_value: RO:0002264 GO:0030644 {evidence="IDA", xref="PMID:21737451"} property_value: RO:0002264 GO:0030644 {evidence="IMP", xref="PMID:17898038"} property_value: RO:0002264 GO:0044861 {evidence="IMP", xref="PMID:29357410"} property_value: RO:0002264 GO:0046720 {evidence="IMP", xref="PMID:20591941"} -property_value: RO:0002264 GO:0050829 {evidence="IMP", xref="PMID:14665435"} property_value: RO:0002264 GO:0050829 {evidence="IMP", xref="PMID:14871399"} +property_value: RO:0002264 GO:0050829 {evidence="IMP", xref="PMID:14665435"} property_value: RO:0002264 GO:0097709 {evidence="IMP", xref="PMID:28785050"} property_value: RO:0002264 GO:0097709 {evidence="IMP", xref="PMID:29145399"} @@ -193350,10 +193350,10 @@ property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:29437892"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:17765678"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:16336229"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19061864"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:14622145"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:20943658"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:23918928"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:14622145"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:20368623"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:23918928"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:17204322"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:15452145"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:26582200"} @@ -193452,12 +193452,12 @@ is_a: PR:000000001 property_value: IAO:0000028 "Tekt2" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0030317 {evidence="IMP", xref="PMID:15340058"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} @@ -194670,8 +194670,8 @@ property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:30394292"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0030213 {evidence="IDA", xref="PMID:30394292"} property_value: RO:0002331 GO:0030213 {evidence="IDA", xref="PMID:17324121"} -property_value: RO:0002331 GO:0030213 {evidence="IMP", xref="PMID:20507985"} property_value: RO:0002331 GO:0030213 {evidence="IMP", xref="PMID:22016393"} +property_value: RO:0002331 GO:0030213 {evidence="IMP", xref="PMID:20507985"} [Term] id: https://identifiers.org/uniprot:Q92823 @@ -194954,8 +194954,8 @@ name: Peroxisomal membrane protein PEX13 is_a: PR:000000001 property_value: IAO:0000028 "PEX13" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0016560 {evidence="IDA", xref="PMID:28765278"} property_value: RO:0002331 GO:0016560 {evidence="IMP", xref="PMID:8858165"} +property_value: RO:0002331 GO:0016560 {evidence="IDA", xref="PMID:28765278"} property_value: RO:0002331 GO:0016561 {evidence="IDA", xref="PMID:28765278"} [Term] @@ -195592,8 +195592,8 @@ id: https://identifiers.org/uniprot:Q96AJ9 name: Vesicle transport through interaction with t-SNAREs homolog 1A is_a: PR:000000001 property_value: IAO:0000028 "VTI1A" xsd:string -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:19224922"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0032456 {evidence="IMP", xref="PMID:23677696"} property_value: RO:0002331 GO:0042147 {evidence="IDA", xref="PMID:15215310"} @@ -195630,8 +195630,8 @@ name: Mitochondrial calcium uniporter regulator 1 is_a: PR:000000001 property_value: IAO:0000028 "MCUR1" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0051561 {evidence="IMP", xref="PMID:23178883"} property_value: RO:0002331 GO:0051561 {evidence="IMP", xref="PMID:27184846"} +property_value: RO:0002331 GO:0051561 {evidence="IMP", xref="PMID:23178883"} property_value: RO:0002331 GO:0051561 {evidence="IMP", xref="PMID:26445506"} [Term] @@ -196025,8 +196025,8 @@ property_value: IAO:0000028 "TIFA" xsd:string property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0002753 {evidence="IDA", xref="PMID:28222186"} property_value: RO:0002331 GO:0002753 {evidence="IDA", xref="PMID:28877472"} -property_value: RO:0002331 GO:0002753 {evidence="IDA", xref="PMID:30111836"} property_value: RO:0002331 GO:0002753 {evidence="IDA", xref="PMID:26068852"} +property_value: RO:0002331 GO:0002753 {evidence="IDA", xref="PMID:30111836"} property_value: RO:0002331 GO:0045087 {evidence="IDA", xref="PMID:28877472"} property_value: RO:0002331 GO:0045087 {evidence="IDA", xref="PMID:28222186"} property_value: RO:0002331 GO:0045087 {evidence="IDA", xref="PMID:30111836"} @@ -196727,8 +196727,8 @@ name: Protein bicaudal D homolog 1 is_a: PR:000000001 property_value: IAO:0000028 "BICD1" xsd:string property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:17562788"} -property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:20089649"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:12447383"} +property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:20089649"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0005794 {evidence="IDA", xref="PMID:17139249"} property_value: RO:0002331 GO:0072385 {evidence="IMP", xref="PMID:12447383"} @@ -197199,8 +197199,8 @@ id: https://identifiers.org/uniprot:Q96JB1 name: Dynein axonemal heavy chain 8 is_a: PR:000000001 property_value: IAO:0000028 "DNAH8" xsd:string -property_value: RO:0001025 GO:0005930 {evidence="IDA", xref="PMID:31178125"} property_value: RO:0001025 GO:0005930 {evidence="IMP", xref="PMID:32619401"} +property_value: RO:0001025 GO:0005930 {evidence="IDA", xref="PMID:31178125"} property_value: RO:0001025 GO:0036126 {evidence="IDA", xref="PMID:31178125"} property_value: RO:0001025 GO:0036126 {evidence="IMP", xref="PMID:32619401"} property_value: RO:0002162 NCBITaxon:9606 @@ -197212,8 +197212,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0017119 {evidence="IDA", xref="PMID:15047703"} property_value: BFO:0000050 GO:0017119 {evidence="IDA", xref="PMID:11292827"} property_value: IAO:0000028 "COG3" xsd:string -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:11980916"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0006888 {evidence="IDA", xref="PMID:11929878"} @@ -198044,20 +198044,20 @@ property_value: RO:0002331 GO:0002674 {evidence="IMP", xref="PMID:11687797"} property_value: RO:0002331 GO:0006954 {evidence="IDA", xref="PMID:18403674"} property_value: RO:0002331 GO:0006954 {evidence="IDA", xref="PMID:17483456"} property_value: RO:0002331 GO:0006954 {evidence="IDA", xref="PMID:16407889"} -property_value: RO:0002331 GO:0006954 {evidence="IMP", xref="PMID:28847925"} property_value: RO:0002331 GO:0006954 {evidence="IMP", xref="PMID:12093792"} +property_value: RO:0002331 GO:0006954 {evidence="IMP", xref="PMID:28847925"} property_value: RO:0002331 GO:0006954 {evidence="IDA", xref="PMID:18604214"} -property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:23582325"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:36442502"} -property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:28656979"} +property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:23582325"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:33231615"} +property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:28656979"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:17483456"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:35254907"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:35559676"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:34554188"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:30487600"} -property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:31189953"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:35114687"} +property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:31189953"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:27432880"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:25686105"} property_value: RO:0002331 GO:0044546 {evidence="IDA", xref="PMID:39173637"} @@ -198071,8 +198071,8 @@ property_value: RO:0002331 GO:0050728 {evidence="IMP", xref="PMID:17178985"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:31086327"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:31086329"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:35559676"} -property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:31189953"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:35114687"} +property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:31189953"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:25686105"} property_value: RO:0002331 GO:0050729 {evidence="IDA", xref="PMID:35254907"} @@ -198400,8 +198400,8 @@ name: Kinesin-like protein KIF20B is_a: PR:000000001 property_value: IAO:0000028 "KIF20B" xsd:string property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:11470801"} -property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:12740395"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:12740395"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:17409436"} property_value: RO:0001025 GO:0070938 {evidence="IDA", xref="PMID:17409436"} property_value: RO:0002162 NCBITaxon:9606 @@ -198634,8 +198634,8 @@ id: https://identifiers.org/uniprot:Q96RL7 name: Intermembrane lipid transfer protein VPS13A is_a: PR:000000001 property_value: IAO:0000028 "VPS13A" xsd:string -property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:32845802"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:30741634"} +property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:32845802"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:30093493"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:30709847"} property_value: RO:0001025 GO:0010008 {evidence="IDA", xref="PMID:30709847"} @@ -198867,8 +198867,8 @@ property_value: RO:0002331 GO:0060337 {evidence="IMP", xref="PMID:22783022"} id: https://identifiers.org/uniprot:Q96ST8 name: Centrosomal protein of 89 kDa is_a: PR:000000001 -property_value: BFO:0000050 GO:0097539 {evidence="IDA", xref="PMID:23348840"} property_value: BFO:0000050 GO:0097539 {evidence="IDA", xref="PMID:23789104"} +property_value: BFO:0000050 GO:0097539 {evidence="IDA", xref="PMID:23348840"} property_value: IAO:0000028 "CEP89" xsd:string property_value: RO:0001025 GO:0097730 {evidence="IDA", xref="PMID:23789104"} property_value: RO:0002162 NCBITaxon:9606 @@ -200125,10 +200125,10 @@ property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10229823"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:10229828"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:14990792"} -property_value: RO:0002264 GO:0045953 {evidence="IGI", xref="PMID:19535641"} +property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:12858173"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:10229823"} +property_value: RO:0002264 GO:0045953 {evidence="IGI", xref="PMID:19535641"} property_value: RO:0002264 GO:0045953 {evidence="IDA", xref="PMID:10229828"} [Term] @@ -200399,8 +200399,8 @@ property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:26440732"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:23791195"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0016080 {evidence="IMP", xref="PMID:10892652"} -property_value: RO:0002331 GO:0097091 {evidence="IDA", xref="PMID:10892652"} property_value: RO:0002331 GO:0097091 {evidence="IDA", xref="PMID:12796785"} +property_value: RO:0002331 GO:0097091 {evidence="IDA", xref="PMID:10892652"} [Term] id: https://identifiers.org/uniprot:Q99K23 @@ -201452,8 +201452,8 @@ property_value: RO:0002331 GO:0150079 {evidence="IDA", xref="PMID:29407460"} property_value: RO:0002331 GO:0150079 {evidence="IMP", xref="PMID:31900229"} property_value: RO:0002331 GO:1903980 {evidence="IDA", xref="PMID:31370707"} property_value: RO:0002331 GO:1903980 {evidence="IMP", xref="PMID:30617257"} -property_value: RO:0002331 GO:1903980 {evidence="IMP", xref="PMID:29752066"} property_value: RO:0002331 GO:1903980 {evidence="IMP", xref="PMID:24990881"} +property_value: RO:0002331 GO:1903980 {evidence="IMP", xref="PMID:29752066"} property_value: RO:0002331 GO:1903980 {evidence="IMP", xref="PMID:25631124"} property_value: RO:0004032 GO:0050829 {evidence="IMP", xref="PMID:29887864"} property_value: RO:0004033 GO:0070269 {evidence="IMP", xref="PMID:29887864"} @@ -201545,8 +201545,8 @@ property_value: IAO:0000028 "Nkg7" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0002420 {evidence="IMP", xref="PMID:32839608"} property_value: RO:0002331 GO:0035710 {evidence="IMP", xref="PMID:32839608"} -property_value: RO:0002331 GO:0042267 {evidence="IMP", xref="PMID:32839608"} property_value: RO:0002331 GO:0042267 {evidence="IMP", xref="PMID:33911019"} +property_value: RO:0002331 GO:0042267 {evidence="IMP", xref="PMID:32839608"} property_value: RO:0002331 GO:0043320 {evidence="IMP", xref="PMID:33911019"} property_value: RO:0002331 GO:0043320 {evidence="IMP", xref="PMID:32839608"} property_value: RO:0002331 GO:0050729 {evidence="IMP", xref="PMID:32839608"} @@ -201654,8 +201654,8 @@ property_value: RO:0002264 GO:0042491 {evidence="IMP", xref="PMID:16481439"} property_value: RO:0002264 GO:0050910 {evidence="IMP", xref="PMID:16481439"} property_value: RO:0002264 GO:0050973 {evidence="IMP", xref="PMID:16481439"} property_value: RO:0002264 GO:0060088 {evidence="IGI", xref="PMID:15537665"} -property_value: RO:0002264 GO:0060088 {evidence="IMP", xref="PMID:23217710"} property_value: RO:0002264 GO:0060088 {evidence="IMP", xref="PMID:10978835"} +property_value: RO:0002264 GO:0060088 {evidence="IMP", xref="PMID:23217710"} property_value: RO:0002264 GO:0060088 {evidence="IMP", xref="PMID:11124469"} property_value: RO:0002264 GO:0060088 {evidence="IMP", xref="PMID:16887306"} property_value: RO:0002264 GO:0060122 {evidence="IMP", xref="PMID:18339676"} @@ -202420,8 +202420,8 @@ property_value: IAO:0000028 "INPP5K" xsd:string property_value: RO:0001025 GO:0001726 {evidence="IDA", xref="PMID:12536145"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:12536145"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:28190456"} -property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:18774950"} property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:26940976"} +property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:18774950"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:12556481"} property_value: RO:0001025 GO:0032587 {evidence="IDA", xref="PMID:12556481"} property_value: RO:0001025 GO:0043005 {evidence="IDA", xref="PMID:10753883"} @@ -202788,8 +202788,8 @@ is_a: PR:000000001 property_value: BFO:0000050 GO:0072546 {evidence="IDA", xref="PMID:22119785"} property_value: BFO:0000050 GO:0072546 {evidence="IPI", xref="PMID:32439656"} property_value: IAO:0000028 "EMC6" xsd:string -property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:32439656"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:23182941"} +property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:32439656"} property_value: RO:0001025 GO:1903349 {evidence="IDA", xref="PMID:23182941"} property_value: RO:0002162 NCBITaxon:9606 @@ -203184,8 +203184,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q9BXC9 name: BBSome complex member BBS2 is_a: PR:000000001 -property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} property_value: BFO:0000050 GO:0034464 {evidence="IMP", xref="PMID:19150989"} +property_value: BFO:0000050 GO:0034464 {evidence="IPI", xref="PMID:19081074"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:17574030"} property_value: BFO:0000050 GO:0034464 {evidence="IDA", xref="PMID:24550735"} property_value: BFO:0000050 GO:0060170 {evidence="IDA", xref="PMID:19081074"} @@ -204557,14 +204557,14 @@ is_a: PR:000000001 property_value: IAO:0000028 "Cfap95" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q9CQC4 @@ -205273,11 +205273,11 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0007129 {evidence="IMP", xref="PMID:27796301"} property_value: RO:0002331 GO:0007129 {evidence="IMP", xref="PMID:33508233"} property_value: RO:0002331 GO:0007130 {evidence="IMP", xref="PMID:33508233"} -property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:27796301"} property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:33508233"} +property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:27796301"} property_value: RO:0002331 GO:0010705 {evidence="IMP", xref="PMID:27796301"} -property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:33508233"} property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:27796301"} +property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:33508233"} property_value: RO:0002331 GO:0051321 {evidence="IMP", xref="PMID:33508233"} [Term] @@ -207144,8 +207144,8 @@ name: Disks large-associated protein 1 is_a: PR:000000001 property_value: BFO:0000050 GO:0014069 {evidence="IMP", xref="PMID:21558424"} property_value: IAO:0000028 "Dlgap1" xsd:string -property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:21558424"} property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:17114649"} +property_value: RO:0001025 GO:0014069 {evidence="IDA", xref="PMID:21558424"} property_value: RO:0002162 NCBITaxon:10090 [Term] @@ -207193,8 +207193,8 @@ property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q9D451 @@ -207211,14 +207211,14 @@ is_a: PR:000000001 property_value: IAO:0000028 "Efhc2" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} [Term] id: https://identifiers.org/uniprot:Q9D489 @@ -207379,8 +207379,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} @@ -207400,14 +207400,14 @@ name: RIB43A-like with coiled-coils protein 2 is_a: PR:000000001 property_value: IAO:0000028 "Ribc2" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -207586,14 +207586,14 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007129 {evidence="IMP", xref="PMID:22530760"} property_value: RO:0002264 GO:0051598 {evidence="IMP", xref="PMID:22530760"} property_value: RO:0002331 GO:0007130 {evidence="IMP", xref="PMID:21478856"} -property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:21478856"} property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:21079677"} +property_value: RO:0002331 GO:0007283 {evidence="IMP", xref="PMID:21478856"} property_value: RO:0002331 GO:0042138 {evidence="IMP", xref="PMID:21079677"} property_value: RO:0002331 GO:0042138 {evidence="IMP", xref="PMID:21478856"} -property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:21478856"} property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:21079677"} -property_value: RO:0002331 GO:0051177 {evidence="IMP", xref="PMID:21478856"} +property_value: RO:0002331 GO:0048477 {evidence="IMP", xref="PMID:21478856"} property_value: RO:0002331 GO:0051177 {evidence="IMP", xref="PMID:21079677"} +property_value: RO:0002331 GO:0051177 {evidence="IMP", xref="PMID:21478856"} property_value: RO:0002331 GO:0051321 {evidence="IEP", xref="PMID:19686734"} property_value: RO:0002331 GO:0051321 {evidence="IEP", xref="PMID:19851446"} property_value: RO:0002331 GO:0051598 {evidence="IMP", xref="PMID:21478856"} @@ -208432,8 +208432,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Cfap141" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} @@ -208565,8 +208565,8 @@ property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} [Term] id: https://identifiers.org/uniprot:Q9D9U4 @@ -208788,8 +208788,8 @@ property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -208861,14 +208861,14 @@ is_a: PR:000000001 property_value: IAO:0000028 "Tekt1" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} [Term] id: https://identifiers.org/uniprot:Q9DAJ4 @@ -208893,13 +208893,13 @@ property_value: RO:0001025 GO:0097386 {evidence="IDA", xref="PMID:19463890"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0007286 {evidence="IGI", xref="PMID:15148410"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} -property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160112 {evidence="IDA", xref="PMID:37295417"} [Term] @@ -209465,8 +209465,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0043374 {evidence="IDA", xref="PMID:25644000"} property_value: RO:0002331 GO:0045087 {evidence="IMP", xref="PMID:10639151"} property_value: RO:0002331 GO:0045087 {evidence="IMP", xref="PMID:11500431"} -property_value: RO:0002331 GO:0071346 {evidence="IDA", xref="PMID:18765738"} property_value: RO:0002331 GO:0071346 {evidence="IDA", xref="PMID:11500431"} +property_value: RO:0002331 GO:0071346 {evidence="IDA", xref="PMID:18765738"} property_value: RO:0002331 GO:0071346 {evidence="IDA", xref="PMID:12438372"} property_value: RO:0002432 GO:0005783 {evidence="IDA", xref="PMID:9099712"} @@ -210536,8 +210536,8 @@ property_value: RO:0001025 GO:0030027 {evidence="IDA", xref="PMID:28483977"} property_value: RO:0001025 GO:0030175 {evidence="IDA", xref="PMID:28483977"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:23434913"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:18076286"} -property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:15255972"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:17761882"} +property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:15255972"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:28426968"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:18614158"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:22949634"} @@ -210991,8 +210991,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0016079 {evidence="IMP", xref="PMID:25609709"} property_value: RO:0002331 GO:0016079 {evidence="IMP", xref="PMID:17055430"} property_value: RO:0002331 GO:0016079 {evidence="EXP", xref="PMID:17055430"} -property_value: RO:0002331 GO:0016079 {evidence="IDA", xref="PMID:18287496"} property_value: RO:0002331 GO:0016079 {evidence="IDA", xref="PMID:17055430"} +property_value: RO:0002331 GO:0016079 {evidence="IDA", xref="PMID:18287496"} property_value: RO:0002331 GO:0016082 {evidence="IMP", xref="PMID:20562868"} property_value: RO:0002331 GO:0016082 {evidence="IDA", xref="PMID:25609709"} property_value: RO:0002432 GO:0030672 {evidence="IDA", xref="PMID:17055430"} @@ -211525,8 +211525,8 @@ property_value: BFO:0000050 GO:0005858 {evidence="IMP", xref="PMID:11153919"} property_value: BFO:0000050 GO:0036157 {evidence="IMP", xref="PMID:18950741"} property_value: IAO:0000028 "DNAI2" xsd:string property_value: RO:0001025 GO:0005930 {evidence="IDA", xref="PMID:18950741"} -property_value: RO:0001025 GO:0005930 {evidence="IMP", xref="PMID:11153919"} property_value: RO:0001025 GO:0005930 {evidence="IDA", xref="PMID:23849778"} +property_value: RO:0001025 GO:0005930 {evidence="IMP", xref="PMID:11153919"} property_value: RO:0001025 GO:0036126 {evidence="IDA", xref="PMID:18950741"} property_value: RO:0002162 NCBITaxon:9606 @@ -212352,8 +212352,8 @@ property_value: RO:0002331 GO:0061760 {evidence="IMP", xref="PMID:26961233"} property_value: RO:0002331 GO:0061760 {evidence="IMP", xref="PMID:24231284"} property_value: RO:0002331 GO:0061760 {evidence="IMP", xref="PMID:33558980"} property_value: RO:0002331 GO:0061760 {evidence="IMP", xref="PMID:29080677"} -property_value: RO:0002331 GO:0061760 {evidence="IDA", xref="PMID:26488816"} property_value: RO:0002331 GO:0061760 {evidence="IMP", xref="PMID:33548172"} +property_value: RO:0002331 GO:0061760 {evidence="IDA", xref="PMID:26488816"} property_value: RO:0002331 GO:2000318 {evidence="IMP", xref="PMID:29080677"} property_value: RO:0002331 GO:2000318 {evidence="IMP", xref="PMID:24231284"} @@ -213065,8 +213065,8 @@ id: https://identifiers.org/uniprot:Q9H5U6 name: rRNA N(6)-adenosine-methyltransferase ZCCHC4 is_a: PR:000000001 property_value: IAO:0000028 "ZCCHC4" xsd:string -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:30531910"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:31799605"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:30531910"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -213128,8 +213128,8 @@ id: https://identifiers.org/uniprot:Q9H6E5 name: Speckle targeted PIP5K1A-regulated poly(A) polymerase is_a: PR:000000001 property_value: IAO:0000028 "TUT1" xsd:string -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16790842"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:16790842"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -213558,9 +213558,9 @@ is_a: PR:000000001 property_value: IAO:0000028 "ECT2" xsd:string property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:16103226"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:19468300"} -property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:16394104"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:15545273"} property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:20047078"} +property_value: RO:0001025 GO:0030496 {evidence="IDA", xref="PMID:16394104"} property_value: RO:0001025 GO:0032154 {evidence="IDA", xref="PMID:16103226"} property_value: RO:0001025 GO:0032154 {evidence="IDA", xref="PMID:20047078"} property_value: RO:0002162 NCBITaxon:9606 @@ -213662,8 +213662,8 @@ name: Vacuolar protein sorting-associated protein 37B is_a: PR:000000001 property_value: BFO:0000050 GO:0000813 {evidence="IPI", xref="PMID:21757351"} property_value: BFO:0000050 GO:0000813 {evidence="IDA", xref="PMID:18005716"} -property_value: BFO:0000050 GO:0000813 {evidence="IPI", xref="PMID:18005716"} property_value: BFO:0000050 GO:0000813 {evidence="IPI", xref="PMID:32424346"} +property_value: BFO:0000050 GO:0000813 {evidence="IPI", xref="PMID:18005716"} property_value: BFO:0000050 GO:0000813 {evidence="IDA", xref="PMID:22232651"} property_value: BFO:0000050 GO:0000813 {evidence="IDA", xref="PMID:22405001"} property_value: IAO:0000028 "VPS37B" xsd:string @@ -213755,8 +213755,8 @@ property_value: RO:0002162 NCBITaxon:9606 id: https://identifiers.org/uniprot:Q9H9Y6 name: DNA-directed RNA polymerase I subunit RPA2 is_a: PR:000000001 -property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:36271492"} +property_value: BFO:0000050 GO:0005736 {evidence="IDA", xref="PMID:34671025"} property_value: IAO:0000028 "POLR1B" xsd:string property_value: RO:0001025 GO:0001650 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 @@ -214850,8 +214850,8 @@ property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:29206857"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:17360664"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:19815520"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:16407236"} -property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20215401"} +property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:20368620"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:19932097"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:18761673"} property_value: RO:0001025 GO:0030018 {evidence="IDA", xref="PMID:17110593"} @@ -215550,10 +215550,10 @@ name: Origin recognition complex subunit 3 is_a: PR:000000001 property_value: IAO:0000028 "Orc3" xsd:string property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0014009 {evidence="IMP", xref="PMID:21185282"} property_value: RO:0002264 GO:0014009 {evidence="IMP", xref="PMID:23349620"} -property_value: RO:0002264 GO:0061351 {evidence="IMP", xref="PMID:21185282"} +property_value: RO:0002264 GO:0014009 {evidence="IMP", xref="PMID:21185282"} property_value: RO:0002264 GO:0061351 {evidence="IMP", xref="PMID:23349620"} +property_value: RO:0002264 GO:0061351 {evidence="IMP", xref="PMID:21185282"} [Term] id: https://identifiers.org/uniprot:Q9JK37 @@ -215796,8 +215796,8 @@ id: https://identifiers.org/uniprot:Q9JKK1 name: Syntaxin-6 is_a: PR:000000001 property_value: IAO:0000028 "Stx6" xsd:string -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:15800058"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:14622145"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:15800058"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:22783020"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:23485813"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:17003038"} @@ -216831,8 +216831,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "ABCB6" xsd:string property_value: RO:0001025 GO:0005783 {evidence="IDA", xref="PMID:22226084"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:21199866"} -property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:18279659"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} +property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:18279659"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:22226084"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:21199866"} property_value: RO:0001025 GO:0032585 {evidence="IDA", xref="PMID:25627919"} @@ -217492,8 +217492,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "TLR8" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:24942581"} property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0034158 {evidence="IDA", xref="PMID:12032557"} property_value: RO:0002331 GO:0034158 {evidence="IDA", xref="PMID:24942581"} +property_value: RO:0002331 GO:0034158 {evidence="IDA", xref="PMID:12032557"} property_value: RO:0002331 GO:0034158 {evidence="IDA", xref="PMID:33718825"} property_value: RO:0002331 GO:0045089 {evidence="IDA", xref="PMID:16123302"} @@ -217955,8 +217955,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "SACM1L" xsd:string property_value: RO:0001025 GO:0000139 {evidence="IDA", xref="PMID:29461204"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:27044890"} -property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:31806350"} property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:29461204"} +property_value: RO:0001025 GO:0005789 {evidence="IDA", xref="PMID:31806350"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000054"} property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="PMID:31806350"} property_value: RO:0002162 NCBITaxon:9606 @@ -218185,8 +218185,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "TBC1D23" xsd:string property_value: RO:0001025 GO:0005794 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:29426865"} -property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:28823706"} property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:29084197"} +property_value: RO:0001025 GO:0005802 {evidence="IDA", xref="PMID:28823706"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002331 GO:0042147 {evidence="IMP", xref="PMID:29084197"} property_value: RO:0002331 GO:0099041 {evidence="IDA", xref="PMID:29426865"} @@ -219214,8 +219214,8 @@ id: https://identifiers.org/uniprot:Q9NZ94 name: Neuroligin-3 is_a: PR:000000001 property_value: IAO:0000028 "NLGN3" xsd:string -property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:17292328"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:15150161"} +property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:17292328"} property_value: RO:0002162 NCBITaxon:9606 [Term] @@ -219328,8 +219328,8 @@ property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:27829214"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:22522597"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:24923447"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:25956029"} -property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:20042497"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:27323397"} +property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="PMID:20042497"} property_value: RO:0001025 GO:0005730 {evidence="IDA", xref="GO_REF:0000052"} property_value: RO:0002162 NCBITaxon:9606 property_value: RO:0002325 GO:0033553 {evidence="IDA", xref="PMID:27729611"} @@ -219680,8 +219680,8 @@ name: Calmodulin-regulated spectrin-associated protein 3 is_a: PR:000000001 property_value: IAO:0000028 "CAMSAP3" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0045198 {evidence="IDA", xref="PMID:27802168"} property_value: RO:0002331 GO:0045198 {evidence="IDA", xref="PMID:26715742"} +property_value: RO:0002331 GO:0045198 {evidence="IDA", xref="PMID:27802168"} [Term] id: https://identifiers.org/uniprot:Q9P209 @@ -220215,8 +220215,8 @@ name: Integrin alpha-IIb is_a: PR:000000001 property_value: IAO:0000028 "Itga2b" xsd:string property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:20228271"} -property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19360001"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:12900455"} +property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:19360001"} property_value: RO:0001025 GO:0009897 {evidence="IDA", xref="PMID:18971422"} property_value: RO:0001025 GO:0009986 {evidence="IDA", xref="PMID:14751927"} property_value: RO:0002162 NCBITaxon:10090 @@ -220661,15 +220661,15 @@ property_value: RO:0001025 GO:0005879 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0001025 GO:0036064 {evidence="IDA", xref="PMID:21289087"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0042073 {evidence="IMP", xref="PMID:21289087"} -property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002331 GO:0030317 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37865089"} +property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37989994"} property_value: RO:0002432 GO:0036126 {evidence="IDA", xref="PMID:37295417"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37295417"} -property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37989994"} +property_value: RO:0002432 GO:0160111 {evidence="IDA", xref="PMID:37865089"} [Term] id: https://identifiers.org/uniprot:Q9QXM0 @@ -220979,8 +220979,8 @@ is_a: PR:000000001 property_value: IAO:0000028 "Zbp1" xsd:string property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0060340 {evidence="IMP", xref="PMID:17618271"} -property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:33109609"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32296175"} +property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:33109609"} property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:32350114"} property_value: RO:0002331 GO:0002218 {evidence="IDA", xref="PMID:32200799"} property_value: RO:0002331 GO:0050729 {evidence="IMP", xref="PMID:27819681"} @@ -222171,8 +222171,8 @@ property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:21606356"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:14973275"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:12107488"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:12866128"} -property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:12074562"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:11466438"} +property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:12074562"} property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:23284756"} property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:11549719"} property_value: RO:0001025 GO:0043209 {evidence="HDA", xref="PMID:17634366"} @@ -225315,8 +225315,8 @@ property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:25137548"} property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:35831509"} property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:36175670"} property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:35830882"} -property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:35768504"} property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:16630891"} +property_value: BFO:0000050 GO:0000164 {evidence="IDA", xref="PMID:35768504"} property_value: IAO:0000028 "SHOC2" xsd:string property_value: RO:0002162 NCBITaxon:9606 @@ -227908,8 +227908,8 @@ id: https://identifiers.org/uniprot:Q9Y3U8 name: Large ribosomal subunit protein eL36 is_a: PR:000000001 property_value: BFO:0000050 GO:0022625 {evidence="HDA", xref="PMID:12962325"} -property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:25957688"} +property_value: BFO:0000050 GO:0022625 {evidence="IDA", xref="PMID:32669547"} property_value: BFO:0000050 GO:0022625 {evidence="IPI", xref="PMID:25901680"} property_value: BFO:0000050 GO:0022626 {evidence="IDA", xref="PMID:23636399"} property_value: IAO:0000028 "RPL36" xsd:string @@ -229093,8 +229093,8 @@ name: NF-kappa-B essential modulator is_a: PR:000000001 property_value: IAO:0000028 "IKBKG" xsd:string property_value: RO:0002162 NCBITaxon:9606 -property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:22607974"} property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:27777308"} +property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:22607974"} property_value: RO:0002331 GO:0050862 {evidence="IDA", xref="PMID:18287044"} property_value: RO:0002331 GO:0050862 {evidence="IDA", xref="PMID:27777308"} property_value: RO:0002331 GO:0051650 {evidence="IMP", xref="PMID:24561039"} @@ -229204,15 +229204,15 @@ property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:29500354"} property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:15930088"} property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:9651366"} property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:23324180"} -property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:12730338"} property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:12411514"} -property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:11744745"} +property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:12730338"} property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:10069984"} +property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:11744745"} property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:16636648"} property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:17661077"} property_value: RO:0002327 GO:0008510 {evidence="IDA", xref="PMID:9235899"} -property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:15817634"} property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:23636456"} +property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:15817634"} property_value: RO:0002327 GO:0008510 {evidence="IMP", xref="PMID:15218065"} property_value: RO:0002331 GO:0036376 {evidence="IMP", xref="PMID:16636648"} property_value: RO:0002331 GO:0051453 {evidence="IMP", xref="PMID:24453308"} @@ -229378,8 +229378,8 @@ property_value: RO:0002331 GO:0002218 {evidence="IMP", xref="PMID:24739961"} property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:25774715"} property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:27693356"} property_value: RO:0002331 GO:0042742 {evidence="IMP", xref="PMID:24739961"} -property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:30062052"} property_value: RO:0002331 GO:0042742 {evidence="IMP", xref="PMID:24715728"} +property_value: RO:0002331 GO:0042742 {evidence="IDA", xref="PMID:30062052"} property_value: RO:0002331 GO:0140639 {evidence="IDA", xref="PMID:25774715"} property_value: RO:0002331 GO:0140639 {evidence="IDA", xref="PMID:25774716"} property_value: RO:0002331 GO:0140639 {evidence="IDA", xref="PMID:30062052"} @@ -229443,12 +229443,12 @@ is_a: PR:000000001 property_value: IAO:0000028 "Sncg" xsd:string property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:10195122"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:14585981"} -property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:9801372"} property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:15147505"} -property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:10195122"} +property_value: RO:0001025 GO:0030424 {evidence="IDA", xref="PMID:9801372"} property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:14585981"} -property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:15147505"} +property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:10195122"} property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:9801372"} +property_value: RO:0001025 GO:0043025 {evidence="IDA", xref="PMID:15147505"} property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002331 GO:0009306 {evidence="IDA", xref="PMID:16392033"} @@ -229602,8 +229602,8 @@ property_value: RO:0002162 NCBITaxon:10090 property_value: RO:0002264 GO:0051932 {evidence="IMP", xref="PMID:27488640"} property_value: RO:0002264 GO:0060326 {evidence="IMP", xref="PMID:20376365"} property_value: RO:0002264 GO:0090497 {evidence="IMP", xref="PMID:17507657"} -property_value: RO:0002264 GO:0140059 {evidence="IMP", xref="PMID:27488640"} property_value: RO:0002264 GO:0140059 {evidence="IMP", xref="PMID:22323733"} +property_value: RO:0002264 GO:0140059 {evidence="IMP", xref="PMID:27488640"} [Term] id: https://identifiers.org/uniprot:Q9Z0L1 @@ -230639,8 +230639,8 @@ property_value: RO:0001025 GO:0001917 {evidence="IDA", xref="PMID:11481257"} property_value: RO:0001025 GO:0001917 {evidence="IDA", xref="PMID:19218615"} property_value: RO:0001025 GO:0043679 {evidence="IDA", xref="PMID:11481257"} property_value: RO:0002162 NCBITaxon:10090 -property_value: RO:0002264 GO:0006910 {evidence="IMP", xref="PMID:19837063"} property_value: RO:0002264 GO:0006910 {evidence="IDA", xref="PMID:20978472"} +property_value: RO:0002264 GO:0006910 {evidence="IMP", xref="PMID:19837063"} property_value: RO:0002331 GO:0016358 {evidence="IMP", xref="PMID:19218615"} property_value: RO:0002331 GO:0042462 {evidence="IMP", xref="PMID:19218615"} @@ -230971,8 +230971,8 @@ id: https://identifiers.org/uniprot:Q9Z2I2 name: Peptidyl-prolyl cis-trans isomerase FKBP1B is_a: PR:000000001 property_value: IAO:0000028 "Fkbp1b" xsd:string -property_value: RO:0001025 GO:0016529 {evidence="IDA", xref="PMID:21788490"} property_value: RO:0001025 GO:0016529 {evidence="IDA", xref="PMID:19578067"} +property_value: RO:0001025 GO:0016529 {evidence="IDA", xref="PMID:21788490"} property_value: RO:0001025 GO:0033017 {evidence="IDA", xref="PMID:14592808"} property_value: RO:0001025 GO:0033017 {evidence="IDA", xref="PMID:16481613"} property_value: RO:0002162 NCBITaxon:10090 diff --git a/clm-kg.owl b/clm-kg.owl index 9bb7844..cd6a4e7 100644 --- a/clm-kg.owl +++ b/clm-kg.owl @@ -12,12 +12,12 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 @@ -10053,12 +10053,12 @@ - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10116,12 +10116,12 @@ - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10158,12 +10158,12 @@ - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10227,19 +10227,19 @@ - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10255,12 +10255,12 @@ - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10276,12 +10276,12 @@ - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10297,12 +10297,12 @@ - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10318,12 +10318,12 @@ - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10339,12 +10339,12 @@ - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10360,12 +10360,12 @@ - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10381,12 +10381,12 @@ - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10402,12 +10402,12 @@ - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10423,12 +10423,12 @@ - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10444,12 +10444,12 @@ - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10507,12 +10507,12 @@ - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10528,12 +10528,12 @@ - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10549,12 +10549,12 @@ - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10570,12 +10570,12 @@ - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10591,12 +10591,12 @@ - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10612,12 +10612,12 @@ - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10675,12 +10675,12 @@ - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10738,12 +10738,12 @@ - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10759,12 +10759,12 @@ - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10780,12 +10780,12 @@ - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10801,12 +10801,12 @@ - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -10822,12 +10822,12 @@ - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -801558,6 +801558,17 @@ + + + + + + A CD8 T cells in the Human Lung has the gene markers CCL5, CD3D with a NS-Forest FBeta value of 0.76s. + CD8 T cells + + + + @@ -801591,24 +801602,24 @@ - + - - + + - A Vip_20 in the Human Brain has the gene markers CBLN1, VIPR2, PPP1R1C, VIP with a NS-Forest FBeta value of 0.3658536585365853s. - Vip_20 + A Alveolar Mph proliferating in the Human Lung has the gene markers PCLAF, RRM2, UBE2C, NUSAP1 with a NS-Forest FBeta value of 0.26s. + Alveolar Mph proliferating - + - - + + - A L2/3 IT_2 in the Human Brain has the gene markers THSD4, TESPA1, TRPC3 with a NS-Forest FBeta value of 0.6621140142517815s. - L2/3 IT_2 + A Vip_20 in the Human Brain has the gene markers CBLN1, VIPR2, PPP1R1C, VIP with a NS-Forest FBeta value of 0.3658536585365853s. + Vip_20 @@ -801657,6 +801668,17 @@ + + + + + + A Goblet (nasal) in the Human Lung has the gene markers LYPD2, MUC5AC with a NS-Forest FBeta value of 0.81s. + Goblet (nasal) + + + + @@ -801668,6 +801690,17 @@ + + + + + + A Multiciliated (non-nasal) in the Human Lung has the gene markers C1orf194, MS4A8 with a NS-Forest FBeta value of 0.86s. + Multiciliated (non-nasal) + + + + @@ -801701,6 +801734,17 @@ + + + + + + A Subpleural fibroblasts in the Human Lung has the gene markers WT1, CXCL12 with a NS-Forest FBeta value of 0.60s. + Subpleural fibroblasts + + + + @@ -801712,6 +801756,17 @@ + + + + + + A Mast cells in the Human Lung has the gene markers TPSAB1 with a NS-Forest FBeta value of 0.96s. + Mast cells + + + + @@ -801767,35 +801822,13 @@ - + - - + + - A L6 IT_2 in the Human Brain has the gene markers LINC00343, ADAMTS3, PXDN with a NS-Forest FBeta value of 0.5810546875s. - L6 IT_2 - - - - - - - - - - A L4 IT_3 in the Human Brain has the gene markers TMEM215, KCNH8, RORB with a NS-Forest FBeta value of 0.6151315789473684s. - L4 IT_3 - - - - - - - - - - A L5 IT_6 in the Human Brain has the gene markers NPFFR2, SULF2, RORB with a NS-Forest FBeta value of 0.6619822485207101s. - L5 IT_6 + A AT2 proliferating in the Human Lung has the gene markers PEG10, PRC1, TOP2A with a NS-Forest FBeta value of 0.61s. + AT2 proliferating @@ -801866,24 +801899,24 @@ - + - - + + - A Vip_18 in the Human Brain has the gene markers NOX4, RXRG, NDST4 with a NS-Forest FBeta value of 0.38953488372093026s. - Vip_18 + A Lymphatic EC proliferating in the Human Lung has the gene markers CENPF, CCL21 with a NS-Forest FBeta value of 0.73s. + Lymphatic EC proliferating - + - - + + - A L5 IT_4 in the Human Brain has the gene markers C22orf34, LDLRAD3, RORB, KCNK2 with a NS-Forest FBeta value of 0.44211195928753183s. - L5 IT_4 + A Vip_18 in the Human Brain has the gene markers NOX4, RXRG, NDST4 with a NS-Forest FBeta value of 0.38953488372093026s. + Vip_18 @@ -801899,17 +801932,6 @@ - - - - - - A L6 IT_1 in the Human Brain has the gene markers THEMIS, HOPX, MKX with a NS-Forest FBeta value of 0.6710122699386504s. - L6 IT_1 - - - - @@ -801954,17 +801976,6 @@ - - - - - - A L4 IT in the Human Brain has the gene markers RORB, ST8SIA4 with a NS-Forest FBeta value of 0.720108696s. - L4 IT - - - - @@ -802042,13 +802053,13 @@ - + - - + + - A L6 IT Car3_1 in the Human Brain has the gene markers LINC00348 with a NS-Forest FBeta value of 0.665s. - L6 IT Car3_1 + A EC aerocyte capillary in the Human Lung has the gene markers EDNRB with a NS-Forest FBeta value of 0.83s. + EC aerocyte capillary @@ -802064,24 +802075,24 @@ - + - - + + - A L5 IT_2 in the Human Brain has the gene markers NPY2R, PCED1B, TLL1, RORB with a NS-Forest FBeta value of 0.5685240963855422s. - L5 IT_2 + A Sst_20 in the Human Brain has the gene markers QRFPR, HGF, RELN with a NS-Forest FBeta value of 0.4671717171717172s. + Sst_20 - + - - + + - A Sst_20 in the Human Brain has the gene markers QRFPR, HGF, RELN with a NS-Forest FBeta value of 0.4671717171717172s. - Sst_20 + A Lymphatic EC mature in the Human Lung has the gene markers CCL21 with a NS-Forest FBeta value of 0.88s. + Lymphatic EC mature @@ -802130,24 +802141,35 @@ - + - - + + - A Sncg_1 in the Human Brain has the gene markers UNC5B, TAFA4, THSD7B with a NS-Forest FBeta value of 0.5883947939262474s. - Sncg_1 + A Alveolar macrophages in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.80s. + Alveolar macrophages + + + + + + + + + + A Lymphatic EC differentiating in the Human Lung has the gene markers SEMA3D, KALRN with a NS-Forest FBeta value of 0.42s. + Lymphatic EC differentiating - + - - + + - A L2/3 IT_4 in the Human Brain has the gene markers TPBG, FAP, ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.6337047353760445s. - L2/3 IT_4 + A Sncg_1 in the Human Brain has the gene markers UNC5B, TAFA4, THSD7B with a NS-Forest FBeta value of 0.5883947939262474s. + Sncg_1 @@ -802174,24 +802196,24 @@ - + - - + + - A L2/3 IT_3 in the Human Brain has the gene markers COL27A1, ONECUT2, MOXD1, BMPR1B with a NS-Forest FBeta value of 0.675117924528302s. - L2/3 IT_3 + A Sst_24 in the Human Brain has the gene markers NDST4, BMP6, MYO5B with a NS-Forest FBeta value of 0.37790697674418605s. + Sst_24 - + - - + + - A Sst_24 in the Human Brain has the gene markers NDST4, BMP6, MYO5B with a NS-Forest FBeta value of 0.37790697674418605s. - Sst_24 + A Deuterosomal in the Human Lung has the gene markers CDC20B, CEP78 with a NS-Forest FBeta value of 0.71s. + Deuterosomal @@ -802295,17 +802317,6 @@ - - - - - - A L2/3 IT_5 in the Human Brain has the gene markers GPX3, ADCYAP1, RMST with a NS-Forest FBeta value of 0.5061141304347826s. - L2/3 IT_5 - - - - @@ -802328,17 +802339,6 @@ - - - - - - A L2/3 IT in the Human Brain has the gene markers ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.670149932s. - L2/3 IT - - - - @@ -802361,13 +802361,13 @@ - + - - + + - A L5 IT_3 in the Human Brain has the gene markers RPRM, HPCA, RORB with a NS-Forest FBeta value of 0.49479166666666663s. - L5 IT_3 + A AT2 in the Human Lung has the gene markers SFTPA1 with a NS-Forest FBeta value of 0.95s. + AT2 @@ -802416,6 +802416,17 @@ + + + + + + A Club (non-nasal) in the Human Lung has the gene markers CYP2F1, SCGB1A1 with a NS-Forest FBeta value of 0.68s. + Club (non-nasal) + + + + @@ -802449,13 +802460,13 @@ - + - - + + - A L2/3 IT in the Human Brain has the gene markers ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.670149932s. - L2/3 IT + A Monocyte-derived Mph in the Human Lung has the gene markers C15orf48, CD68 with a NS-Forest FBeta value of 0.37s. + Monocyte-derived Mph @@ -802515,17 +802526,6 @@ - - - - - - A L6 IT Car3 in the Human Brain has the gene markers SMYD1, THEMIS with a NS-Forest FBeta value of 0.877752028s. - L6 IT Car3 - - - - @@ -802570,13 +802570,13 @@ - + - - + + - A L4 IT_5 in the Human Brain has the gene markers COL22A1, CMAHP with a NS-Forest FBeta value of 0.6576797385620915s. - L4 IT_5 + A EC venous pulmonary in the Human Lung has the gene markers ACKR1, SRPX with a NS-Forest FBeta value of 0.74s. + EC venous pulmonary @@ -802614,24 +802614,13 @@ - - - - - - A L5 IT_5 in the Human Brain has the gene markers NPNT, CA10, RORB, KCNK2 with a NS-Forest FBeta value of 0.5813953488372092s. - L5 IT_5 - - - - - + - - + + - A L6 IT_2 in the Human Brain has the gene markers LINC00343, ADAMTS3, PXDN with a NS-Forest FBeta value of 0.5810546875s. - L6 IT_2 + A T cells proliferating in the Human Lung has the gene markers CD3G, MKI67, PCLAF, CD3E with a NS-Forest FBeta value of 0.71s. + T cells proliferating @@ -802647,17 +802636,6 @@ - - - - - - A L4 IT_3 in the Human Brain has the gene markers TMEM215, KCNH8, RORB with a NS-Forest FBeta value of 0.6151315789473684s. - L4 IT_3 - - - - @@ -802724,17 +802702,6 @@ - - - - - - A L5 IT_1 in the Human Brain has the gene markers CHST2, TLL1, RORB with a NS-Forest FBeta value of 0.6250000000000001s. - L5 IT_1 - - - - @@ -802845,6 +802812,17 @@ + + + + + + A Tuft in the Human Lung has the gene markers POU2F3, HOMER3, MYB with a NS-Forest FBeta value of 0.56s. + Tuft + + + + @@ -802922,6 +802900,17 @@ + + + + + + A Migratory DCs in the Human Lung has the gene markers CCL22 with a NS-Forest FBeta value of 0.50s. + Migratory DCs + + + + @@ -802944,28 +802933,6 @@ - - - - - - A L4 IT_2 in the Human Brain has the gene markers C6orf141, ST8SIA4 with a NS-Forest FBeta value of 0.7738095238095238s. - L4 IT_2 - - - - - - - - - - A L2/3 IT_6 in the Human Brain has the gene markers LINC00507, ADAMTS3, LY86-AS1 with a NS-Forest FBeta value of 0.5509868421052632s. - L2/3 IT_6 - - - - @@ -803021,24 +802988,24 @@ - + - - + + - A Vip_24 in the Human Brain has the gene markers LYPD1, ENHO, CHRNA2 with a NS-Forest FBeta value of 0.36276223776223776s. - Vip_24 + A SMG mucous in the Human Lung has the gene markers BPIFB2 with a NS-Forest FBeta value of 0.93s. + SMG mucous - + - - + + - A L6 IT Car3_2 in the Human Brain has the gene markers SMYD1, ITGB8 with a NS-Forest FBeta value of 0.6594036697247707s. - L6 IT Car3_2 + A Vip_24 in the Human Brain has the gene markers LYPD1, ENHO, CHRNA2 with a NS-Forest FBeta value of 0.36276223776223776s. + Vip_24 @@ -803087,6 +803054,17 @@ + + + + + + A Smooth muscle FAM83D+ in the Human Lung has the gene markers ACTG2 with a NS-Forest FBeta value of 0.77s. + Smooth muscle FAM83D+ + + + + @@ -803153,13 +803131,13 @@ - + - - + + - A L4 IT_1 in the Human Brain has the gene markers TPBG, RP11-197K6.1, ST8SIA4 with a NS-Forest FBeta value of 0.6129032258064517s. - L4 IT_1 + A Ionocyte in the Human Lung has the gene markers ASCL3, BSND with a NS-Forest FBeta value of 0.82s. + Ionocyte @@ -803197,13 +803175,24 @@ - + - - + + - A L5 IT_3 in the Human Brain has the gene markers RPRM, HPCA, RORB with a NS-Forest FBeta value of 0.49479166666666663s. - L5 IT_3 + A CD4 T cells in the Human Lung has the gene markers LTB, CD3D with a NS-Forest FBeta value of 0.59s. + CD4 T cells + + + + + + + + + + A EC general capillary in the Human Lung has the gene markers FCN3, CA4 with a NS-Forest FBeta value of 0.78s. + EC general capillary @@ -803219,13 +803208,13 @@ - + - - + + - A L6 IT_1 in the Human Brain has the gene markers THEMIS, HOPX, MKX with a NS-Forest FBeta value of 0.6710122699386504s. - L6 IT_1 + A Suprabasal in the Human Lung has the gene markers TNC, KRT15, SERPINB4 with a NS-Forest FBeta value of 0.62s. + Suprabasal @@ -803241,6 +803230,17 @@ + + + + + + A Goblet (bronchial) in the Human Lung has the gene markers PLCG2, ANKRD36C with a NS-Forest FBeta value of 0.55s. + Goblet (bronchial) + + + + @@ -803340,6 +803340,17 @@ + + + + + + A Alveolar macrophages in the Human Lung has the gene markers MSR1, FABP4 with a NS-Forest FBeta value of 0.80s. + Alveolar macrophages + + + + @@ -803384,6 +803395,17 @@ + + + + + + A Alveolar Mph CCL3+ in the Human Lung has the gene markers TNIP3, CXCL5 with a NS-Forest FBeta value of 0.67s. + Alveolar Mph CCL3+ + + + + @@ -803450,35 +803472,46 @@ - + - - + + - A L4 IT_6 in the Human Brain has the gene markers PLEKHH2, CLMN, ST8SIA4 with a NS-Forest FBeta value of 0.6703910614525139s. - L4 IT_6 + A EC arterial in the Human Lung has the gene markers DKK2 with a NS-Forest FBeta value of 0.71s. + EC arterial - + - - + + - A VLMC_2 in the Human Brain has the gene markers SLC19A1, COLEC12 with a NS-Forest FBeta value of 0.876753507014028s. - VLMC_2 + A EC venous systemic in the Human Lung has the gene markers PLVAP, EMCN with a NS-Forest FBeta value of 0.63s. + EC venous systemic - + - - + + - A L4 IT_6 in the Human Brain has the gene markers PLEKHH2, CLMN, ST8SIA4 with a NS-Forest FBeta value of 0.6703910614525139s. - L4 IT_6 + A DC1 in the Human Lung has the gene markers CLEC9A, DNASE1L3 with a NS-Forest FBeta value of 0.77s. + DC1 + + + + + + + + + + A VLMC_2 in the Human Brain has the gene markers SLC19A1, COLEC12 with a NS-Forest FBeta value of 0.876753507014028s. + VLMC_2 @@ -803516,17 +803549,6 @@ - - - - - - A L6 IT Car3 in the Human Brain has the gene markers SMYD1, THEMIS with a NS-Forest FBeta value of 0.877752028s. - L6 IT Car3 - - - - @@ -803538,17 +803560,6 @@ - - - - - - A L4 IT_4 in the Human Brain has the gene markers STAC, KCNH8, SYT2 with a NS-Forest FBeta value of 0.6526243093922651s. - L4 IT_4 - - - - @@ -803571,17 +803582,6 @@ - - - - - - A L2/3 IT_1 in the Human Brain has the gene markers PRSS12, ROS1, COL5A2, SLC38A11 with a NS-Forest FBeta value of 0.5517711171662125s. - L2/3 IT_1 - - - - @@ -803615,24 +803615,13 @@ - - - - - - A L5 IT_1 in the Human Brain has the gene markers CHST2, TLL1, RORB with a NS-Forest FBeta value of 0.6250000000000001s. - L5 IT_1 - - - - - + - - + + - A L6 IT Car3_1 in the Human Brain has the gene markers LINC00348 with a NS-Forest FBeta value of 0.665s. - L6 IT Car3_1 + A pre-TB secretory in the Human Lung has the gene markers SCGB1A1, SFTPB with a NS-Forest FBeta value of 0.73s. + pre-TB secretory @@ -803670,28 +803659,6 @@ - - - - - - A L2/3 IT_1 in the Human Brain has the gene markers PRSS12, ROS1, COL5A2, SLC38A11 with a NS-Forest FBeta value of 0.5517711171662125s. - L2/3 IT_1 - - - - - - - - - - A L5 IT in the Human Brain has the gene markers ARSJ, RORB, KCNK2 with a NS-Forest FBeta value of 0.764261336s. - L5 IT - - - - @@ -803736,24 +803703,13 @@ - - - - - - A L2/3 IT_2 in the Human Brain has the gene markers THSD4, TESPA1, TRPC3 with a NS-Forest FBeta value of 0.6621140142517815s. - L2/3 IT_2 - - - - - + - - + + - A L4 IT in the Human Brain has the gene markers RORB, ST8SIA4 with a NS-Forest FBeta value of 0.720108696s. - L4 IT + A AT1 in the Human Lung has the gene markers AGER with a NS-Forest FBeta value of 0.85s. + AT1 @@ -803791,13 +803747,13 @@ - + - - + + - A L4 IT_1 in the Human Brain has the gene markers TPBG, RP11-197K6.1, ST8SIA4 with a NS-Forest FBeta value of 0.6129032258064517s. - L4 IT_1 + A Plasmacytoid DCs in the Human Lung has the gene markers LILRA4, JCHAIN with a NS-Forest FBeta value of 0.79s. + Plasmacytoid DCs @@ -803846,6 +803802,17 @@ + + + + + + A Smooth muscle in the Human Lung has the gene markers ACTA2, TAGLN with a NS-Forest FBeta value of 0.69s. + Smooth muscle + + + + @@ -803857,13 +803824,13 @@ - + - - + + - A L6 IT in the Human Brain has the gene markers LINC00507, THEMIS with a NS-Forest FBeta value of 0.641695703s. - L6 IT + A Alveolar fibroblasts in the Human Lung has the gene markers AOC3, LUM with a NS-Forest FBeta value of 0.70s. + Alveolar fibroblasts @@ -803879,6 +803846,17 @@ + + + + + + A Mesothelium in the Human Lung has the gene markers CALB2, PRG4 with a NS-Forest FBeta value of 0.89s. + Mesothelium + + + + @@ -803912,17 +803890,6 @@ - - - - - - A L5 IT_2 in the Human Brain has the gene markers NPY2R, PCED1B, TLL1, RORB with a NS-Forest FBeta value of 0.5685240963855422s. - L5 IT_2 - - - - @@ -803956,13 +803923,13 @@ - + - - + + - A L4 IT_5 in the Human Brain has the gene markers COL22A1, CMAHP with a NS-Forest FBeta value of 0.6576797385620915s. - L4 IT_5 + A Adventitial fibroblasts in the Human Lung has the gene markers SCARA5, CD248 with a NS-Forest FBeta value of 0.85s. + Adventitial fibroblasts @@ -803989,6 +803956,17 @@ + + + + + + A Neuroendocrine in the Human Lung has the gene markers CHGA, GRP with a NS-Forest FBeta value of 0.94s. + Neuroendocrine + + + + @@ -804055,6 +804033,17 @@ + + + + + + A Non-classical monocytes in the Human Lung has the gene markers LILRB2, LILRB1 with a NS-Forest FBeta value of 0.46s. + Non-classical monocytes + + + + @@ -804088,6 +804077,17 @@ + + + + + + A Basal resting in the Human Lung has the gene markers KRT15, KRT17 with a NS-Forest FBeta value of 0.75s. + Basal resting + + + + @@ -804099,13 +804099,13 @@ - + - - + + - A L2/3 IT_3 in the Human Brain has the gene markers COL27A1, ONECUT2, MOXD1, BMPR1B with a NS-Forest FBeta value of 0.675117924528302s. - L2/3 IT_3 + A Classical monocytes in the Human Lung has the gene markers S100A12, FCN1 with a NS-Forest FBeta value of 0.77s. + Classical monocytes @@ -804143,6 +804143,17 @@ + + + + + + A SMG serous (bronchial) in the Human Lung has the gene markers PRR4, C6orf58 with a NS-Forest FBeta value of 0.75s. + SMG serous (bronchial) + + + + @@ -804154,6 +804165,17 @@ + + + + + + A Goblet (subsegmental) in the Human Lung has the gene markers MTRNR2L8, SCGB1A1 with a NS-Forest FBeta value of 0.61s. + Goblet (subsegmental) + + + + @@ -804286,17 +804308,6 @@ - - - - - - A L5 IT_4 in the Human Brain has the gene markers C22orf34, LDLRAD3, RORB, KCNK2 with a NS-Forest FBeta value of 0.44211195928753183s. - L5 IT_4 - - - - @@ -804330,13 +804341,13 @@ - + - - + + - A L5 IT_5 in the Human Brain has the gene markers NPNT, CA10, RORB, KCNK2 with a NS-Forest FBeta value of 0.5813953488372092s. - L5 IT_5 + A Hematopoietic stem cells in the Human Lung has the gene markers CYTL1, FAM30A with a NS-Forest FBeta value of 0.66s. + Hematopoietic stem cells @@ -804374,6 +804385,17 @@ + + + + + + A SM activated stress response in the Human Lung has the gene markers RERGL, C11orf96 with a NS-Forest FBeta value of 0.58s. + SM activated stress response + + + + @@ -804440,6 +804462,17 @@ + + + + + + A SMG duct in the Human Lung has the gene markers GLYATL2, DMBT1 with a NS-Forest FBeta value of 0.46s. + SMG duct + + + + @@ -804451,24 +804484,24 @@ - + - - + + - A L6 IT in the Human Brain has the gene markers LINC00507, THEMIS with a NS-Forest FBeta value of 0.641695703s. - L6 IT + A Hillock-like in the Human Lung has the gene markers KRT14, KRT6A with a NS-Forest FBeta value of 0.66s. + Hillock-like - + - - + + - A L2/3 IT_6 in the Human Brain has the gene markers LINC00507, ADAMTS3, LY86-AS1 with a NS-Forest FBeta value of 0.5509868421052632s. - L2/3 IT_6 + A Plasma cells in the Human Lung has the gene markers JCHAIN with a NS-Forest FBeta value of 0.91s. + Plasma cells @@ -804484,28 +804517,6 @@ - - - - - - A L4 IT_4 in the Human Brain has the gene markers STAC, KCNH8, SYT2 with a NS-Forest FBeta value of 0.6526243093922651s. - L4 IT_4 - - - - - - - - - - A L2/3 IT_4 in the Human Brain has the gene markers TPBG, FAP, ONECUT2, COL5A2 with a NS-Forest FBeta value of 0.6337047353760445s. - L2/3 IT_4 - - - - @@ -804638,6 +804649,17 @@ + + + + + + A Peribronchial fibroblasts in the Human Lung has the gene markers DPT, APOD with a NS-Forest FBeta value of 0.58s. + Peribronchial fibroblasts + + + + @@ -804649,6 +804671,17 @@ + + + + + + A B cells in the Human Lung has the gene markers MS4A1, CD79A with a NS-Forest FBeta value of 0.86s. + B cells + + + + @@ -804737,13 +804770,13 @@ - + - - + + - A L5 IT_6 in the Human Brain has the gene markers NPFFR2, SULF2, RORB with a NS-Forest FBeta value of 0.6619822485207101s. - L5 IT_6 + A Pericytes in the Human Lung has the gene markers HIGD1B, KCNK3 with a NS-Forest FBeta value of 0.84s. + Pericytes @@ -804759,6 +804792,17 @@ + + + + + + A SMG serous (nasal) in the Human Lung has the gene markers STATH with a NS-Forest FBeta value of 0.92s. + SMG serous (nasal) + + + + @@ -804792,6 +804836,39 @@ + + + + + + A Smooth muscle in the Human Lung has the gene markers ACTA2, TAGLN with a NS-Forest FBeta value of 0.69s. + Smooth muscle + + + + + + + + + + A Club (nasal) in the Human Lung has the gene markers TFCP2L1, PSCA with a NS-Forest FBeta value of 0.43s. + Club (nasal) + + + + + + + + + + A Multiciliated (nasal) in the Human Lung has the gene markers FMO3, MRLN, OMG with a NS-Forest FBeta value of 0.59s. + Multiciliated (nasal) + + + + @@ -804825,17 +804902,6 @@ - - - - - - A L2/3 IT_5 in the Human Brain has the gene markers GPX3, ADCYAP1, RMST with a NS-Forest FBeta value of 0.5061141304347826s. - L2/3 IT_5 - - - - @@ -804858,17 +804924,6 @@ - - - - - - A L6 IT Car3_2 in the Human Brain has the gene markers SMYD1, ITGB8 with a NS-Forest FBeta value of 0.6594036697247707s. - L6 IT Car3_2 - - - - @@ -805023,6 +805078,39 @@ + + + + + + A NK cells in the Human Lung has the gene markers KLRF1, PRF1 with a NS-Forest FBeta value of 0.79s. + NK cells + + + + + + + + + + A Myofibroblasts in the Human Lung has the gene markers ASPN, DKK3, BCHE with a NS-Forest FBeta value of 0.48s. + Myofibroblasts + + + + + + + + + + A DC2 in the Human Lung has the gene markers CLEC10A, HLA-DQA1 with a NS-Forest FBeta value of 0.53s. + DC2 + + + + @@ -805034,13 +805122,13 @@ - + - - + + - A L4 IT_2 in the Human Brain has the gene markers C6orf141, ST8SIA4 with a NS-Forest FBeta value of 0.7738095238095238s. - L4 IT_2 + A Alveolar Mph MT-positive in the Human Lung has the gene markers HMOX1, HPGD with a NS-Forest FBeta value of 0.41s. + Alveolar Mph MT-positive @@ -805155,13 +805243,13 @@ - + - - + + - A L5 IT in the Human Brain has the gene markers ARSJ, RORB, KCNK2 with a NS-Forest FBeta value of 0.764261336s. - L5 IT + A AT2 in the Human Lung has the gene markers SFTPA1 with a NS-Forest FBeta value of 0.95s. + AT2 @@ -805221,6 +805309,17 @@ + + + + + + A AT0 in the Human Lung has the gene markers HSD17B6, XIST, SCGB3A2 with a NS-Forest FBeta value of 0.28s. + AT0 + + + + diff --git a/clm-simple.json b/clm-simple.json index 2bedd7f..046ad6b 100644 --- a/clm-simple.json +++ b/clm-simple.json @@ -13,9 +13,9 @@ "val" : "Cell Markers Ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2024-11-28" + "val" : "2024-11-29" } ], - "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-simple.json" + "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-simple.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/CLM_1000001", diff --git a/clm-simple.obo b/clm-simple.obo index f88fac1..8324618 100644 --- a/clm-simple.obo +++ b/clm-simple.obo @@ -1,9 +1,9 @@ format-version: 1.2 -data-version: clm/releases/2024-11-28/clm-simple.owl +data-version: clm/releases/2024-11-29/clm-simple.owl idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# idspace: terms http://purl.org/dc/terms/ ontology: clm/clm-simple -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string property_value: terms:description "None" xsd:string property_value: terms:license https://creativecommons.org/licenses/unspecified property_value: terms:title "Cell Markers Ontology" xsd:string diff --git a/clm-simple.owl b/clm-simple.owl index c3d98d4..4e2d9f9 100644 --- a/clm-simple.owl +++ b/clm-simple.owl @@ -10,11 +10,11 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 diff --git a/clm.json b/clm.json index 9e85f7e..4975f07 100644 --- a/clm.json +++ b/clm.json @@ -13,9 +13,9 @@ "val" : "Cell Markers Ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2024-11-28" + "val" : "2024-11-29" } ], - "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm.json" + "version" : "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm.json" }, "nodes" : [ { "id" : "http://identifiers.org/ensembl/ENSG00000006128", @@ -5279,7 +5279,7 @@ "val" : "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known.", "xrefs" : [ "GOC:tfm", "ISBN:0517223651", "PMID:15817800" ] }, - "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -6362,7 +6362,7 @@ "val" : "A goblet cell located in the nasal epithelium.", "xrefs" : [ "GOC:cjm", "GOC:tfm" ] }, - "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "MP:0002262" } ], @@ -7883,7 +7883,7 @@ "val" : "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice.", "xrefs" : [ "PMID:30069044", "PMID:30069046" ] }, - "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0017000" } ], @@ -8318,7 +8318,7 @@ "val" : "A goblet cell that is part of the epithelium of bronchus.", "xrefs" : [ "GOC:tfm" ] }, - "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).", "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "FMA:263032" } ], @@ -9670,7 +9670,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5.", "xrefs" : [ "PMID:30382198", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770149" } ], @@ -9719,7 +9719,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg.", "xrefs" : [ "PMID:33186530", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770150" } ], @@ -9737,7 +9737,7 @@ "val" : "A transcriptomically distinct cortical GABAergic neuron that expresses the vasocactive intestinal polypeptide and that has its soma located in the cerebral cortex. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Vip.", "xrefs" : [ "PMID:33186530", "PMID:37824655", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770151" } ], @@ -9758,7 +9758,7 @@ "val" : "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst). The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Sst.", "xrefs" : [ "PMID:27477017", "PMID:33742131", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021).", "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], + "comments" : [ "In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021).", "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770152" } ], @@ -9776,7 +9776,7 @@ "val" : "A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb.", "xrefs" : [ "PMID:27477017", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770154" } ], @@ -9794,7 +9794,7 @@ "val" : "A transcriptomically distinct pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier.", "xrefs" : [ "PMID:27477017", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag.", "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], + "comments" : [ "In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag.", "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0107356" } ], @@ -9839,7 +9839,7 @@ "val" : "A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET.", "xrefs" : [ "PMID:34616075", "PMID:37824655", "https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/" ] }, - "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -9854,7 +9854,7 @@ "val" : "A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT.", "xrefs" : [ "PMID:34616075", "PMID:37824655", "https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/" ] }, - "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -9882,7 +9882,7 @@ "val" : "An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex.", "xrefs" : [ "PMID:33184512" ] }, - "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10068,7 +10068,7 @@ "val" : "A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl.", "xrefs" : [ "PMID:15845086", "PMID:31209381", "PMID:33372656", "PMID:37824655", "https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/" ] }, - "comments" : [ "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10183,7 +10183,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found between cortical layer 2-4. This intratelencephalic-projecting glutamatergic neuron has thin-tufted apical dendrites and extends its axonal projection into L5 in the neocortex. This neuronal type has a hyperpolarised resting membrane potential. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L2/3 IT.", "xrefs" : [ "PMID:25622573", "PMID:34004146", "PMID:37292694", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3.", "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], + "comments" : [ "Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3.", "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770156" } ], @@ -10221,7 +10221,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT.", "xrefs" : [ "PMID:37292694", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3.", "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], + "comments" : [ "Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3.", "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10236,7 +10236,7 @@ "val" : "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT.", "xrefs" : [ "PMID:37292694", "PMID:37609206", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770157" } ], @@ -10254,7 +10254,7 @@ "val" : "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT.", "xrefs" : [ "PMID:37292694", "PMID:37609206", "PMID:37824655", "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/" ] }, - "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)." ], "xrefs" : [ { "val" : "ILX:0770158" } ], @@ -10272,7 +10272,7 @@ "val" : "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6.", "xrefs" : [ "PMID:34004146", "PMID:37292694", "PMID:37824655" ] }, - "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10287,7 +10287,7 @@ "val" : "A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3.", "xrefs" : [ "PMID:34004146", "PMID:37824655", "doi:10.1007/s00424-024-02923-2", "doi:10.1101/2022.11.30.518285" ] }, - "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10440,7 +10440,7 @@ "val" : "An epithelial cell that is part of a collecting duct of an airway submucosal gland.", "xrefs" : [ "PMID:25648514", "PMID:29656943" ] }, - "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10495,7 +10495,7 @@ "val" : "A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation.", "xrefs" : [ "PMID:33382972", "PMID:35017701", "PMID:36211428" ] }, - "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10510,7 +10510,7 @@ "val" : "A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes.", "xrefs" : [ "PMID:25564622" ] }, - "comments" : [ "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.", "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], + "comments" : [ "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.", "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10606,7 +10606,7 @@ "val" : "A(n) alveolar macrophage that is cycling.", "xrefs" : [ "PMID:37291214" ] }, - "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10631,7 +10631,7 @@ "val" : "A(n) pulmonary alveolar type 2 cell that is cycling.", "xrefs" : [ "PMID:37291214" ] }, - "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" @@ -10686,7 +10686,7 @@ "val" : "A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6.", "xrefs" : [ "PMID:34004146", "PMID:36007006", "PMID:37824655", "PMID:37824669", "https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/" ] }, - "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], + "comments" : [ "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002175", "val" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" diff --git a/clm.obo b/clm.obo index ed6fa0e..6d0b841 100644 --- a/clm.obo +++ b/clm.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2024-11-28 +data-version: releases/2024-11-29 idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# @@ -7,7 +7,7 @@ ontology: clm property_value: dcterms:description "None" xsd:string property_value: dcterms:license https://creativecommons.org/licenses/unspecified property_value: dcterms:title "Cell Markers Ontology" xsd:string -property_value: owl:versionInfo "2024-11-28" xsd:string +property_value: owl:versionInfo "2024-11-29" xsd:string [Term] id: CHEBI:24431 @@ -3996,7 +3996,7 @@ is_a: CL:0002086 ! specialized cardiac myocyte id: CL:0002075 name: brush cell of tracheobronchial tree def: "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known." [GOC:tfm, ISBN:0517223651, PMID:15817800] -comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0002204 ! brush cell intersection_of: CL:0002204 ! brush cell @@ -4805,7 +4805,7 @@ relationship: RO:0002104 PR:000001012 id: CL:0002480 name: nasal mucosa goblet cell def: "A goblet cell located in the nasal epithelium." [GOC:cjm, GOC:tfm] -comment: The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: MP:0002262 is_a: CL:0002370 ! respiratory goblet cell is_a: CL:0002631 ! epithelial cell of upper respiratory tract @@ -6041,7 +6041,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:0017000 name: pulmonary ionocyte def: "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice." [PMID:30069044, PMID:30069046] -comment: The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: https://cellxgene.cziscience.com/cellguide/CL_0017000 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0005006 ! ionocyte @@ -6391,8 +6391,8 @@ relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle id: CL:1000312 name: bronchial goblet cell def: "A goblet cell that is part of the epithelium of bronchus." [GOC:tfm] -comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} -comment: The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: FMA:263032 is_a: CL:0002328 ! bronchial epithelial cell is_a: CL:0019003 ! tracheobronchial goblet cell @@ -7458,7 +7458,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023011 name: lamp5 GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:30382198, PMID:37824655] -comment: The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770149 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7498,7 +7498,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023015 name: sncg GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:33186530, PMID:37824655] -comment: The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770150 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7513,7 +7513,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023016 name: VIP GABAergic cortical interneuron def: "A transcriptomically distinct cortical GABAergic neuron that expresses the vasocactive intestinal polypeptide and that has its soma located in the cerebral cortex. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Vip." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:33186530, PMID:37824655] -comment: The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770151 is_a: CL:4023064 ! caudal ganglionic eminence derived cortical interneuron intersection_of: CL:0000099 ! interneuron @@ -7530,7 +7530,7 @@ id: CL:4023017 name: sst GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst). The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Sst." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017, PMID:33742131, PMID:37824655] comment: In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021). {xref="PMID:30792151", xref="PMID:33742131", xref="PMID:28821651", xref="PMID:32494634"} -comment: The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770152 is_a: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron intersection_of: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron @@ -7545,7 +7545,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023018 name: pvalb GABAergic cortical interneuron def: "A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017, PMID:37824655] -comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770154 is_a: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron intersection_of: CL:4023069 ! medial ganglionic eminence derived GABAergic cortical interneuron @@ -7561,7 +7561,7 @@ id: CL:4023036 name: chandelier pvalb GABAergic cortical interneuron def: "A transcriptomically distinct pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:27477017] comment: In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. {xref="PMID:27477017"} -comment: The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0107356 is_a: CL:4023018 ! pvalb GABAergic cortical interneuron is_a: CL:4023083 ! chandelier cell @@ -7590,7 +7590,7 @@ is_a: CL:4023008 ! intratelencephalic-projecting glutamatergic cortical neuron id: CL:4023041 name: L5 extratelencephalic projecting glutamatergic cortical neuron def: "A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET." [https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/, PMID:34616075, PMID:37824655] -comment: The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023009 ! extratelencephalic-projecting glutamatergic cortical neuron is_a: CL:4023111 ! cerebral cortex pyramidal neuron intersection_of: CL:4023009 ! extratelencephalic-projecting glutamatergic cortical neuron @@ -7603,7 +7603,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4023042 name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT." [https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/, PMID:34616075, PMID:37824655] -comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023013 ! corticothalamic-projecting glutamatergic cortical neuron intersection_of: CL:4023013 ! corticothalamic-projecting glutamatergic cortical neuron intersection_of: RO:0002100 UBERON:0005395 ! cortical layer VI @@ -7626,7 +7626,7 @@ relationship: RO:0002100 UBERON:0001384 ! primary motor cortex id: CL:4023046 name: L6b glutamatergic neuron of the primary motor cortex def: "An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex." [PMID:33184512] -comment: The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023038 ! L6b glutamatergic cortical neuron relationship: RO:0002100 UBERON:0001384 ! primary motor cortex relationship: RO:0015004 CLM:1000073 ! has characterizing marker set NS forest marker set of L6b glutamatergic neuron of the primary motor cortex (Human Brain). @@ -7784,7 +7784,7 @@ intersection_of: RO:0002100 UBERON:0000956 ! cerebral cortex id: CL:4023121 name: sst chodl GABAergic cortical interneuron def: "A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl." [https://cellxgene.cziscience.com/e/9c63201d-bfd9-41a8-bbbc-18d947556f3d.cxg/, PMID:15845086, PMID:31209381, PMID:33372656, PMID:37824655] -comment: The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023017 ! sst GABAergic cortical interneuron relationship: RO:0002292 PR:000005444 relationship: RO:0015004 CLM:1000083 ! has characterizing marker set NS forest marker set of sst chodl GABAergic cortical interneuron (Human Brain). @@ -7882,7 +7882,7 @@ id: CL:4030059 name: L2/3 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found between cortical layer 2-4. This intratelencephalic-projecting glutamatergic neuron has thin-tufted apical dendrites and extends its axonal projection into L5 in the neocortex. This neuronal type has a hyperpolarised resting membrane potential. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L2/3 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:25622573, PMID:34004146, PMID:37292694, PMID:37824655] comment: Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3. {xref="PMID:37824655"} -comment: The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770156 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7914,7 +7914,7 @@ id: CL:4030063 name: L4 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37824655] comment: Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3. -comment: The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: RO:0002100 UBERON:0005393 ! cortical layer IV @@ -7926,7 +7926,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030064 name: L5 intratelencephalic projecting glutamatergic neuron def: "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37609206, PMID:37824655] -comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770157 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7939,7 +7939,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030065 name: L6 intratelencephalic projecting glutamatergic neuron def: "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT." [https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/, PMID:37292694, PMID:37609206, PMID:37824655] -comment: The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} xref: ILX:0770158 is_a: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4023040 ! L2/3-6 intratelencephalic projecting glutamatergic neuron @@ -7952,7 +7952,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030067 name: L5/6 near-projecting glutamatergic neuron def: "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6." [PMID:34004146, PMID:37292694, PMID:37824655] -comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:4023012 ! near-projecting glutamatergic cortical neuron intersection_of: CL:4023012 ! near-projecting glutamatergic cortical neuron intersection_of: RO:0002100 UBERON:8440002 ! cortical layer V/VI @@ -7964,7 +7964,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4030068 name: L6 intratelencephalic projecting Car3 glutamatergic neuron def: "A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3." [doi:10.1007/s00424-024-02923-2, doi:10.1101/2022.11.30.518285, PMID:34004146, PMID:37824655] -comment: The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: BFO:0000002 is_a: CL:4030065 ! L6 intratelencephalic projecting glutamatergic neuron intersection_of: CL:4030065 ! L6 intratelencephalic projecting glutamatergic neuron @@ -8089,7 +8089,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4033023 name: airway submucosal gland collecting duct epithelial cell def: "An epithelial cell that is part of a collecting duct of an airway submucosal gland." [PMID:25648514, PMID:29656943] -comment: The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000066 ! epithelial cell relationship: BFO:0000050 UBERON:8410077 ! part of airway submucosal gland relationship: RO:0015004 CLM:1000052 ! has characterizing marker set NS forest marker set of airway submucosal gland collecting duct epithelial cell (Human Lung). @@ -8130,7 +8130,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: CL:4033043 name: lung interstitial macrophage def: "A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation." [PMID:33382972, PMID:35017701, PMID:36211428] -comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000864 ! tissue-resident macrophage is_a: CL:0002320 ! connective tissue cell is_a: CL:1001603 ! lung macrophage @@ -8143,7 +8143,7 @@ id: CL:4033048 name: respiratory suprabasal cell def: "A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes." [PMID:25564622] comment: In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3. {xref="PMID:25658372", xref="doi:10.1101/2023.04.20.537495"} -comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002368 ! respiratory epithelial cell is_a: CL:0011026 ! progenitor cell relationship: RO:0002202 CL:0002633 ! respiratory basal cell @@ -8237,7 +8237,7 @@ intersection_of: RO:0000086 PATO:0002354 id: CL:4033077 name: cycling alveolar macrophage def: "A(n) alveolar macrophage that is cycling." [PMID:37291214] -comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0000583 ! alveolar macrophage is_a: CL:4033076 ! cycling macrophage intersection_of: CL:0000583 ! alveolar macrophage @@ -8261,7 +8261,7 @@ relationship: RO:0000086 PATO:0002354 id: CL:4033080 name: cycling pulmonary alveolar type 2 cell def: "A(n) pulmonary alveolar type 2 cell that is cycling." [PMID:37291214] -comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} is_a: CL:0002063 ! pulmonary alveolar type 2 cell intersection_of: CL:0002063 ! pulmonary alveolar type 2 cell intersection_of: RO:0000056 GO:0022402 ! participates in cell cycle process @@ -8313,7 +8313,7 @@ relationship: BFO:0000050 UBERON:0004088 ! part of orbital region id: CL:4042013 name: Lamp5 Lhx6 neuron def: "A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6." [https://cellxgene.cziscience.com/e/e4ddac12-f48f-4455-8e8d-c2a48a683437.cxg/, PMID:34004146, PMID:36007006, PMID:37824655, PMID:37824669] -comment: The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} +comment: The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). {xref="https://doi.org/10.5281/zenodo.11165918"} relationship: RO:0015004 CLM:1000075 ! has characterizing marker set NS forest marker set of Lamp5 Lhx6 neuron (Human Brain). property_value: RO:0002175 NCBITaxon:9606 diff --git a/clm.owl b/clm.owl index 58fbec1..6e1df16 100644 --- a/clm.owl +++ b/clm.owl @@ -11,11 +11,11 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + None Cell Markers Ontology - 2024-11-28 + 2024-11-29 @@ -16884,7 +16884,7 @@ Until recently, glucagon has been considered a pancreas-specific hormone; howeve Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known. - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). brush cell of tracheobronchial tree @@ -16898,7 +16898,7 @@ Until recently, glucagon has been considered a pancreas-specific hormone; howeve - The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value). + The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -19579,7 +19579,7 @@ In addition to their mucus-secreting capabilities, respiratory goblet cells also A goblet cell located in the nasal epithelium. MP:0002262 - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). nasal mucosa goblet cell @@ -19592,7 +19592,7 @@ In addition to their mucus-secreting capabilities, respiratory goblet cells also - The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value). + The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -23803,7 +23803,7 @@ The pulmonary ionocyte is a relatively newly identified, specific epithelial cel The main responsibility of the pulmonary ionocyte pertains to the regulation and mobilization of chloride ions. They express a high level of CFTR (Cystic Fibrosis Transmembrane Conductance Regulator) gene, which encodes a protein channel across the membrane of cells that produce mucus, sweat, saliva, tears, and digestive enzymes. The activity of CFTR regulates the movement of chloride ions and fluids in and out of cells, which helps maintain a balance of fluid in the organs they are expressed in. If CFTR is dysfunctional, it can cause conditions such as cystic fibrosis, characterized by thick, sticky mucus that can clog the lungs and obstruct the pancreas, leading to respiratory and digestive issues. The discovery of this cell type offers new doors to the treatment and further understanding of diseases like cystic fibrosis. Increased understanding of pulmonary ionocytes could contribute to the development of novel therapeutic approaches to manipulate the function of CFTR in the lungs and other organs affected by dysfunctional CFTR. https://cellxgene.cziscience.com/cellguide/CL_0017000 - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). pulmonary ionocyte @@ -23828,7 +23828,7 @@ The discovery of this cell type offers new doors to the treatment and further un - The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value). + The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -24983,8 +24983,8 @@ The primary function of PNECs is linked to regulation and maintenance of the lun A goblet cell that is part of the epithelium of bronchus. FMA:263032 - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). bronchial goblet cell @@ -24996,13 +24996,13 @@ The primary function of PNECs is linked to regulation and maintenance of the lun - The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 - The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value). + The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28589,7 +28589,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5. ILX:0770149 - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). lamp5 GABAergic cortical interneuron @@ -28603,7 +28603,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). + The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28726,7 +28726,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg. ILX:0770150 - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). sncg GABAergic cortical interneuron @@ -28740,7 +28740,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). + The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28785,7 +28785,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o This neuronal type is distinguished by its heterogeneous morphology and electrophysiological characteristics (Pronneke et al., 2015,2020; Apicella and Marchionni, 2022). Variations in morphology and firing patterns are observed in human cortical VIP interneurons. In a study by Lee et al., 2023, four distinct subtypes of VIP neurons were identified, each exhibiting unique morphologies, soma locations, and electrophysiological properties. These subtypes are defined according to their transcriptomic markers: LBH-VIP and CCD184-VIP, both of which display a bipolar morphology with axons and dendrites extending across cortical layers; and SY16-VIP and ADAMTSL1-VIP, characterized by a dendritic arbor that spreads horizontally within the same layer as the soma (Lee et al., 2023). Disruption or malfunction of VIP cortical interneuron is implicated in neurodevelopmental disorders such as Rett Syndrome and Dravet Syndrome (Goff and Goldberg 2021). ILX:0770151 - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). VIP GABAergic cortical interneuron @@ -28808,7 +28808,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). + The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28853,7 +28853,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0770152 In the mouse cortex, sst GABAergic cortical interneurons show heterogeneous electrophysiological signatures varying between low-threshold spiking (LTS), regular-spiking and fast-spiking (Song, Y. H., Yoon, J., & Lee, S. H. 2021). Sst GABAergic cortical interneurons have multiple functional roles in the brain. In the mouse, they involved in the generation of slow-waves during the sleep phase of non-rapid eye-movement (NREM) (Funk, C. M. et al., 2017), they maintain synaptic plasticity during motor learning (Adler, A., Zhao, R., et al., 2021), they enhance visual perception in the V1 cortical area by suppressing the activity of pyramidal excitatory neurons (Song, YH. et al., 2020). In humans, malfunctioning of sst GABAergic cortical interneurons is associated with neurodegenerative and psychiatric disorders such as Parkinson's disease, Alzheimer's disease, major depressive disorder, bipolar disorder and schizophrenia as individuals affected by these pathologies show a decrease of expression of SST in the brain (Song YH., Yoon J. et al., 2021). - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). sst GABAergic cortical interneuron @@ -28877,7 +28877,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). + The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28921,7 +28921,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb. ILX:0770154 - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). pvalb GABAergic cortical interneuron @@ -28935,7 +28935,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). + The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -28956,7 +28956,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0107356 In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). chandelier pvalb GABAergic cortical interneuron @@ -28975,7 +28975,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). + The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29067,7 +29067,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons ', Author Categories: 'CrossArea_subclass', clusters L5 ET. - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). L5 extratelencephalic projecting glutamatergic cortical neuron @@ -29081,7 +29081,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). + The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29122,7 +29122,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct corticothalamic-projecting neuron with a soma found in cortical layer 6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neurons', Author Categories: 'CrossArea_subclass', clusters L6 CT. - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). L6 corticothalamic-projecting glutamatergic cortical neuron @@ -29136,7 +29136,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). + The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29196,7 +29196,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An excitatory glutamatergic neuron transcriptomically related to the CT subclass, with a soma preferentially located in the bottom of L6 of the primary motor cortex. - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). L6b glutamatergic neuron of the primary motor cortex @@ -29208,7 +29208,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). + The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -29736,7 +29736,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sst Chodl. - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). sst chodl GABAergic cortical interneuron @@ -29752,7 +29752,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). + The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30106,7 +30106,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o ILX:0770156 Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3. - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). L2/3 intratelencephalic projecting glutamatergic neuron @@ -30128,7 +30128,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). + The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30230,7 +30230,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT. Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3. - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). L4 intratelencephalic projecting glutamatergic neuron @@ -30244,7 +30244,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). + The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30280,7 +30280,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT. ILX:0770157 - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). L5 intratelencephalic projecting glutamatergic neuron @@ -30295,7 +30295,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). + The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30331,7 +30331,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT. ILX:0770158 - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). L6 intratelencephalic projecting glutamatergic neuron @@ -30346,7 +30346,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). + The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30381,7 +30381,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6. - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). L5/6 near-projecting glutamatergic neuron @@ -30395,7 +30395,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). + The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30435,7 +30435,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3. - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). L6 intratelencephalic projecting Car3 glutamatergic neuron @@ -30450,7 +30450,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). + The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30853,7 +30853,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o An epithelial cell that is part of a collecting duct of an airway submucosal gland. - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). airway submucosal gland collecting duct epithelial cell @@ -30866,7 +30866,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -30997,7 +30997,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation. - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). lung interstitial macrophage @@ -31011,7 +31011,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value). + The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31037,7 +31037,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes. In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3. - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). respiratory suprabasal cell @@ -31056,7 +31056,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value). + The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31381,7 +31381,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A(n) alveolar macrophage that is cycling. - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). cycling alveolar macrophage @@ -31393,7 +31393,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value). + The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31481,7 +31481,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A(n) pulmonary alveolar type 2 cell that is cycling. - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). cycling pulmonary alveolar type 2 cell @@ -31493,7 +31493,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value). + The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918 @@ -31673,7 +31673,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6. - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). Lamp5 Lhx6 neuron @@ -31689,7 +31689,7 @@ Mesothelial cells of visceral pleura are notably implicated in the development o - The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). + The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value). https://doi.org/10.5281/zenodo.11165918