block_temp_vs_width.yaml

# Finds the minimum blocking temperature over a range of square block widths
{
    # axon geometry
    "axon_length"   : 300,  # µm

    # temperature
    "base_temp" : 16,
    "block_temp" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1 ],
        "example_outputs" : [ "base_temp", 200 ],
        "new_input" : "threshold_param"
    },
    "block_width" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1 ],
        "example_outputs" : [ 2, 82 ],
        "new_input" : "sweep_param"
    },
    "right_edge_of_block" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1000 ],
        "example_outputs" : [ 100, 1100 ],
        "new_input" : "block_width"
    },
    "past_right_edge_of_block" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1000 ],
        "example_outputs" : [ 100.001, 1100.001 ],
        "new_input" : "block_width"
    },
    "axon_temperature" : { # °C
        "action" : "interpolate",
        "example_inputs" : [ 100, 100.00001, "right_edge_of_block",
            "past_right_edge_of_block" ],
        "example_outputs" : [ "base_temp", "block_temp", "block_temp", "base_temp" ],
        "new_input" : "x"
    },

    # simulation settings
    "param_sweep_steps"   : 5,
    "num_sections"        : 3000,

    # plot settings
    "plot_x_variable" : "block_width",
    "plot_y_variable" : "block_temp",
    "plot_title" : "Square block temperature vs block width",
    "plot_x_axis_label" : "block width (micrometers)",
    "plot_y_axis_label" : "block temperature (degrees Celsius)"
}