config.yaml

# PBS configuration
# If submitting to a different project to your default uncomment line below 
# and change project code as appropriate
project: g40
queue: normal
walltime: 5:00:00
jobname: 01deg_jra55_iaf

# Force payu to always find, and save, files in this scratch project directory
shortpath: /scratch/x77

# Model configuration
name: common
model: access-om2
input: /g/data/ik11/inputs/access-om2/input_20200530/common_01deg_jra55
submodels:
    - name: atmosphere
      model: yatm
      exe: /g/data/ik11/inputs/access-om2/bin/yatm_a6e5d87.exe
      input:
            - /g/data/ik11/inputs/access-om2/input_20200530/yatm_01deg
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/rsds/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/rlds/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/prra/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/prsn/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/psl/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/land/day/friver/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/tas/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/huss/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/uas/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/vas/gr/v20190429
            - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/landIce/day/licalvf/gr/v20190429
      ncpus: 1

    - name: ocean
      model: mom
      exe: /g/data/ik11/inputs/access-om2/bin/fms_ACCESS-OM_08cf2b5_libaccessom2_a6e5d87.x
      input: /g/data/ik11/inputs/access-om2/input_20200530/mom_01deg
      ncpus: 4358

    - name: ice
      model: cice5
      exe: /g/data/ik11/inputs/access-om2/bin/cice_auscom_3600x2700_722p_26e6159_libaccessom2_a6e5d87.exe
      input: /g/data/ik11/inputs/access-om2/input_20200530/cice_01deg
      ncpus: 799

# Collation
collate:
  restart: true
  mpi: true
  walltime: 1:00:00
  mem: 16GB
  ncpus: 4
  queue: normal
  exe: /g/data/ik11/inputs/access-om2/bin/mppnccombine-fast

# Misc
runlog: true
stacksize: unlimited
restart_freq: 1  # use tidy_restarts.py instead
# mpirun: --mca pml yalla -x MXM_LOG_FILE=$PBS_JOBFS/mxm.log
qsub_flags: -W umask=027
# set number of cores per node (28 for normalbw, 48 for normal on gadi)
platform:
    nodesize: 48
# sweep and resubmit on specific errors - see https://github.com/payu-org/payu/issues/241#issuecomment-610739771
userscripts:
    error: resub.sh
    run: rm -f resubmit.count

# DANGER! Do not uncomment this without checking the script is synching 
# to the correct location!
# postscript: sync_data.sh