fix: Remove obsolete/vulnerable dependencies

WUR-AI · May 29, 2022 · 71b7e5d · 71b7e5d
1 parent 875ecc0
commit 71b7e5d
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Showing 31 changed files with 281,704 additions and 2,707 deletions.
diff --git a/bin/read.py b/bin/read.py
@@ -4,6 +4,7 @@
 from edam.reader.resolvers.resolver_factory import ResolverFactory
 from edam import SERVER
 from edam.utilities.decorators import timer
+from edam.utilities.utilities import verify_database
 from edam.viewer.app.views import app
 
 
@@ -36,4 +37,5 @@ def cli(input_file, template, metadata, var, drop):
 
 
 if __name__ == '__main__':
+    verify_database()
     cli()
diff --git a/bin/viewer.py b/bin/viewer.py
@@ -1,9 +1,6 @@
-from edam.reader.models.database import recreate_database
-
 from edam import SERVER
+from edam.utilities.utilities import verify_database
 from edam.viewer.app.views import app
-from edam import database_url
-import os
 
 
 def run():
@@ -12,12 +9,6 @@ def run():
     app.run(host=SERVER['host'], port=SERVER['port'], debug=SERVER['debug'])
 
 
-def verify_database():
-    if database_url.drivername == 'sqlite':
-        if not os.path.isfile(database_url.database):
-            recreate_database()
-
-
 if __name__ == "__main__":
     verify_database()
     run()