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environment.yml
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name: PerPlanRT_env
channels:
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- argon2-cffi=20.1.0=py39h27cfd23_1
- async_generator=1.10=pyhd3eb1b0_0
- attrs=21.2.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- bleach=4.0.0=pyhd3eb1b0_0
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.10.26=h06a4308_2
- certifi=2021.10.8=py39h06a4308_0
- cffi=1.14.6=py39h400218f_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cmake=3.19.6=h973ab73_0
- cryptography=36.0.0=py39h9ce1e76_0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py39h295c915_0
- decorator=5.1.0=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- entrypoints=0.3=py39h06a4308_0
- expat=2.4.1=h2531618_2
- fontconfig=2.13.1=h6c09931_0
- freetype=2.11.0=h70c0345_0
- future=0.18.2=py39h06a4308_1
- glib=2.69.1=h5202010_0
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- importlib-metadata=4.8.2=py39h06a4308_0
- importlib_metadata=4.8.2=hd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.4.1=py39h06a4308_1
- ipython=7.29.0=py39hb070fc8_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.5=pyhd3eb1b0_1
- jedi=0.18.0=py39h06a4308_1
- jinja2=3.0.2=pyhd3eb1b0_0
- jpeg=9d=h7f8727e_0
- jsonschema=3.2.0=pyhd3eb1b0_2
- jupyter=1.0.0=py39h06a4308_7
- jupyter_client=7.0.6=pyhd3eb1b0_0
- jupyter_console=6.4.0=pyhd3eb1b0_0
- jupyter_core=4.9.1=py39h06a4308_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- krb5=1.19.2=hac12032_0
- ld_impl_linux-64=2.35.1=h7274673_9
- libcurl=7.80.0=h0b77cf5_0
- libedit=3.1.20210910=h7f8727e_0
- libev=4.33=h7f8727e_1
- libffi=3.3=he6710b0_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libnghttp2=1.46.0=hce63b2e_0
- libopenblas=0.3.17=hf726d26_1
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- lz4-c=1.9.3=h295c915_1
- markupsafe=2.0.1=py39h27cfd23_0
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- mistune=0.8.4=py39h27cfd23_1000
- mkl=2021.4.0=h06a4308_640
- mkl-include=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py39h7f8727e_0
- mkl_fft=1.3.1=py39hd3c417c_0
- mkl_random=1.2.2=py39h51133e4_0
- nbclient=0.5.3=pyhd3eb1b0_0
- nbconvert=6.1.0=py39h06a4308_0
- nbformat=5.1.3=pyhd3eb1b0_0
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.1=pyhd3eb1b0_0
- ninja=1.10.2=py39hd09550d_3
- notebook=6.4.6=py39h06a4308_0
- numpy=1.21.2=py39h20f2e39_0
- numpy-base=1.21.2=py39h79a1101_0
- openssl=1.1.1l=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pandocfilters=1.4.3=py39h06a4308_1
- parso=0.8.2=pyhd3eb1b0_0
- pcre=8.45=h295c915_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pip=21.2.4=py39h06a4308_0
- prometheus_client=0.12.0=pyhd3eb1b0_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- prompt_toolkit=3.0.20=hd3eb1b0_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.10.0=pyhd3eb1b0_0
- pyopenssl=21.0.0=pyhd3eb1b0_1
- pyqt=5.9.2=py39h2531618_6
- pyrsistent=0.18.0=py39heee7806_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.7=h12debd9_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- pyyaml=6.0=py39h7f8727e_1
- pyzmq=22.3.0=py39h295c915_2
- qt=5.9.7=h5867ecd_1
- qtconsole=5.1.1=pyhd3eb1b0_0
- qtpy=1.10.0=pyhd3eb1b0_0
- readline=8.1=h27cfd23_0
- requests=2.26.0=pyhd3eb1b0_0
- rhash=1.4.1=h3c74f83_1
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=58.0.4=py39h06a4308_0
- sip=4.19.13=py39h2531618_0
- six=1.16.0=pyhd3eb1b0_0
- sqlite=3.36.0=hc218d9a_0
- terminado=0.9.4=py39h06a4308_0
- testpath=0.5.0=pyhd3eb1b0_0
- tk=8.6.11=h1ccaba5_0
- tornado=6.1=py39h27cfd23_0
- traitlets=5.1.1=pyhd3eb1b0_0
- typing_extensions=3.10.0.2=pyh06a4308_0
- tzdata=2021e=hda174b7_0
- urllib3=1.26.7=pyhd3eb1b0_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py39h06a4308_1
- wheel=0.37.0=pyhd3eb1b0_1
- widgetsnbextension=3.5.1=py39h06a4308_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.4=h2531618_0
- zipp=3.6.0=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.9=haebb681_0
- pip:
- absl-py==1.0.0
- argparse==1.4.0
- astunparse==1.6.3
- batchgenerators==0.23
- beautifulsoup4==4.10.0
- cachetools==4.2.4
- cleo==0.8.1
- click==8.0.3
- clikit==0.6.2
- crashtest==0.3.1
- cucim==0.19.0
- cycler==0.11.0
- dataclasses==0.6
- dcmrtstruct2nii==2
- dicom2nifti==2.3.0
- einops==0.3.2
- filelock==3.4.0
- flatbuffers==2.0
- fonttools==4.28.4
- gast==0.4.0
- gdown==4.2.0
- google-auth==2.3.3
- google-auth-oauthlib==0.4.6
- google-pasta==0.2.0
- grpcio==1.43.0
- h5py==3.6.0
- hiddenlayer==0.2
- imageio==2.13.3
- itk==5.1.2
- itk-core==5.1.2
- itk-filtering==5.1.2
- itk-io==5.1.2
- itk-numerics==5.1.2
- itk-registration==5.1.2
- itk-segmentation==5.1.2
- joblib==1.1.0
- keras==2.7.0
- keras-preprocessing==1.1.2
- kiwisolver==1.3.2
- libclang==13.0.0
- linecache2==1.0.0
- lmdb==1.2.1
- markdown==3.3.6
- matplotlib==3.5.1
- medpy==0.4.0
- monai==0.7.0
- natsort==8.0.2
- networkx==2.6.3
- nibabel==3.2.1
- oauthlib==3.1.1
- opencv-python==4.5.5.62
- openslide-python==1.1.2
- opt-einsum==3.3.0
- pandas==1.3.5
- pastel==0.2.1
- pillow==8.4.0
- protobuf==3.19.1
- psutil==5.8.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pydicom==2.1.2
- pydicom-seg==0.4.0
- pylev==1.4.0
- pyparsing==3.0.7
- pytorch-ignite==0.4.5
- pytz==2021.3
- pywavelets==1.2.0
- requests-oauthlib==1.3.0
- rsa==4.8
- rt-utils==1.2.1
- scikit-image==0.19.0
- scikit-learn==1.0.1
- scipy==1.7.3
- seaborn==0.11.2
- simpleitk==2.1.1
- sklearn==0.0
- soupsieve==2.3.1
- tensorboard==2.7.0
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.0
- tensorflow==2.7.0
- tensorflow-estimator==2.7.0
- tensorflow-io-gcs-filesystem==0.23.1
- termcolor==1.1.0
- threadpoolctl==3.0.0
- tifffile==2021.11.2
- torch==1.10.1
- torchvision==0.11.2
- tqdm==4.62.3
- traceback2==1.4.0
- unittest2==1.1.0
- werkzeug==2.0.2
- wrapt==1.13.3
prefix: /home/igt/miniconda3/envs/PerPlanRT_env