diff --git a/pyproject.toml b/pyproject.toml
index cffa304a45a2..5908eebe0c41 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -52,18 +52,16 @@ ignore = [
 # deliberately contain code that might not be considered idiomatic or modern
 # These can be run manually once in a while
 "**/test_cases/**/*.py" = ["UP"]
-# Generated protobuf files:
-# TODO: Re-run sync_tensorflow_protobuf_stubs.sh with this rule enabled to remove this entry
-"*_pb2.pyi" = [
-    "UP036", # Version block is outdated for minimum Python version
-]
-
-[tool.ruff.lint.per-file-ignores]
 "*.pyi" = [
     # Most flake8-bugbear rules don't apply for third-party stubs like typeshed,
     # B033 could be slightly useful but Ruff doesn't have per-file select
     "B", # flake8-bugbear
 ]
+# Generated protobuf files:
+# TODO: Re-run sync_tensorflow_protobuf_stubs.sh with this rule enabled to remove this entry
+"*_pb2.pyi" = [
+    "UP036", # Version block is outdated for minimum Python version
+]
 
 [tool.ruff.lint.isort]
 split-on-trailing-comma = false