drug_discovery_kgs.md

Drug Discovery Knowledge Graphs

Full Public Resources

2024

• HealX KG - Open Source Version (Nature Communications 2024)
  • Saatviga Sudhahar, Bugra Ozer, Jiakang Chang, Wayne Chadwick, Daniel O’Donovan, Aoife Campbell, Emma Tulip, Neil Thompson & Ian Roberts
  • [Paper]
  • [Dataset Download]

2023

• PrimeKG (Scientific Data 2023)
  • Payal Chandak, Kexin Huang & Marinka Zitnik.
  • [Paper]
  • [Dataset Download]
  • [Website]
  • [Construction Code]

2022

• PharMeBINet (Scientific Data 2022)

  • Cassandra Königs, Marcel Friedrichs & Theresa Dietrich.
  • [Paper]
  • [Dataset Download]
  • [Website]
  • [Construction Code]

• Clinical Knowledge Graph (CKG) (Nature Biotech 2022)

  • Santos, Alberto, Ana R. Colaço, Annelaura B. Nielsen, Lili Niu, Philipp E. Geyer, Fabian Coscia, Nicolai J. Wewer Albrechtsen, Filip Mundt, Lars Juhl Jensen, and Matthias Mann.
  • [Paper]
  • [Dataset Download]
  • [Website]
  • [Construction Code]

2020

• Drug Repurposing Knowledge Graph (DRKG) (arXiv 2020)

  • Ioannidis, Vassilis N., Xiang Song, Saurav Manchanda, Mufei Li, Xiaoqin Pan, Da Zheng, Xia Ning, Xiangxiang Zeng, and George Karypis.
  • [Paper]
  • [Dataset Download]

• BioKG (CIKM 2020)

  • Walsh, Brian, Sameh K. Mohamed, and Vít Nováček.
  • [Paper]
  • [Dataset Download]
  • [Construction Code]

• OpenBioLink (Bioinformatics 2020)

  • Breit, Anna, Simon Ott, Asan Agibetov, and Matthias Samwald.
  • [Paper]
  • [Dataset Download]
  • [Construction Code]
  • [Website]

• PharmKG (Briefings in Bioinformatics 2020)

  • Zheng, Shuangjia, Jiahua Rao, Ying Song, Jixian Zhang, Xianglu Xiao, Evandro Fei Fang, Yuedong Yang, and Zhangming Niu.
  • [Paper]
  • [Dataset Download]
  • [Website]

2017

• Hetionet (eLife 2017)
  • Himmelstein, Daniel Scott, Antoine Lizee, Christine Hessler, Leo Brueggeman, Sabrina L. Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, and Sergio E. Baranzini.
  • [Paper]
  • [Dataset Download]
  • [Construction Code]
  • [Website]