PiGMarkerProtocol.any

// EXAMPLE of MarkerProcol file for the plug-in-gait protocol. 

#if   (Protocol == FullBodyPlugInGait) | (Protocol == UpperBodyPlugInGait)
 #define _RFHD 
 #define _LFHD 
 #define _RBHD 
 #define _LBHD 
 #define _STRN 
 #define _CLAV 
 #define _T10 
 #define _C7 
 #define _RSHO
 #define _LSHO
 #define _RUPA
 #define _LUPA
 #define _RELB
 #define _LELB
 #define _LFRM
 #define _RFRM
 #define _RWRA
 #define _RWRB
 #define _LWRA
 #define _LWRB
 #define _RFIN
 #define _LFIN
#endif

#define _LPSI
 #define _RPSI
 #define _RASI 
 #define _LASI 

 
 #define _RTHI 
 #define _RKNE 
 #define _RTIB
 #define _RANK
 #define _RTOE
 #define _RHEE
 #define _LTHI
 #define _LKNE
 #define _LTIB
 #define _LANK
 #define _LTOE
 #define _LHEE

 
 
#ifndef MARKER_CUTOFF_ARMS
#define MARKER_CUTOFF_ARMS 5
#endif



#include "ExcludeIndividualMarkers.any"

#ifdef _LPSI
// Marker on the Left Posterior Superior Iliac
CreateMarkerDriver LPSI ( 
UseC3DWeightResiduals = ON,
MarkerPlacement=Trunk.SegmentsLumbar.PelvisSeg,
PlaceMarkerAt =Left.PSIS,
OptX=ON, OptY=OFF, OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  //sRelOpt ={-0.14,0.02, -0.04};
   sRelOpt = {0.0,0.0, 0.0};
};
#endif

#ifdef _RPSI
// Marker on the Right Posterior Superior Iliac
CreateMarkerDriver RPSI (
MarkerPlacement=Trunk.SegmentsLumbar.PelvisSeg,
PlaceMarkerAt =Right.PSIS,
OptX=ON, OptY=OFF, OptZ=ON,
UseC3DWeightResiduals=ON
) = {
//  sRelOpt = {-0.14,0.02, 0.04};
  sRelOpt = {0.0,0.0, 0.0};
};
#endif


//LinkDesignVars PSI_X_Sym ( DesVar1 =Main.Studies.ParameterIdentification.RPSI_X, DesVar2 =Main.Studies.ParameterIdentification.LPSI_X,
//Constraint_Type = EqualToZero, Coef1 = 1, Coef2= 1)={};

LinkDesignVars PSI_Z_Sym ( DesVar1 =Main.Studies.ParameterIdentification.RPSI_Z, DesVar2 =Main.Studies.ParameterIdentification.LPSI_Z,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};



#ifdef _RASI
// Marker on the Right Anterior Superior Iliac
CreateMarkerDriver RASI (
MarkerPlacement=Trunk.SegmentsLumbar.PelvisSeg,
UseC3DWeightResiduals=ON,
OptX=ON, OptY=OFF, OptZ=OFF,
PlaceMarkerAt =Right.ASIS) = {
  sRelOpt = {0.0,0.0,0.0};
};
#endif

#ifdef _LASI
// Marker on the Left Anterior Superior Iliac
CreateMarkerDriver LASI (
MarkerName= LASI ,
MarkerPlacement=Trunk.SegmentsLumbar.PelvisSeg,
UseC3DWeightResiduals=ON,
OptX=ON, OptY=OFF, OptZ=OFF,
PlaceMarkerAt =Left.ASIS
) = {
  sRelOpt = {0.0,0.0, 0.0};
};
#endif


//Optmize markers in x direction of asis and psi but constrain them to be equal
LinkDesignVars RASI_RPSI_X_Sym ( DesVar1 =Main.Studies.ParameterIdentification.RPSI_X, DesVar2 =Main.Studies.ParameterIdentification.RASI_X,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};

LinkDesignVars LASI_LPSI_X_Sym ( DesVar1 =Main.Studies.ParameterIdentification.LPSI_X, DesVar2 =Main.Studies.ParameterIdentification.LASI_X,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};


//// Head


#ifdef _RFHD
// Marker on the Right Front Head
CreateMarkerDriver RFHD (
MarkerPlacement=Trunk.SegmentsThorax.SkullSeg, 
OptX=OFF,OptY=OFF,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.11,0.08,0.05}; 
};
#endif

#ifdef _LFHD
// Marker on the Left Front Head
CreateMarkerDriver LFHD (
MarkerPlacement=Trunk.SegmentsThorax.SkullSeg, 
OptX=OFF,OptY=OFF,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.11,0.08,-0.05};
};
#endif

#ifdef _RBHD
// Marker on the Right Back Head
CreateMarkerDriver RBHD (
MarkerPlacement=Trunk.SegmentsThorax.SkullSeg, 
OptX=OFF ,OptY=OFF ,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.11,0.05,0.06};
};
#endif

#ifdef _LBHD
// Marker on the Left Back Head
CreateMarkerDriver LBHD (
MarkerPlacement=Trunk.SegmentsThorax.SkullSeg,   
OptX=OFF,OptY=OFF,OptZ= ON,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.11,0.05,-0.06};
};
#endif

//LinkDesignVars BHD_X_Sym ( DesVar1 =Main.Studies.ParameterIdentification.RBHD_X, DesVar2 =Main.Studies.ParameterIdentification.LBHD_X,
//Constraint_Type = EqualToZero, Coef1 = 1, Coef2= 1)={};

#if (Protocol == FullBodyPlugInGait) |  (Protocol == UpperBodyPlugInGait)
LinkDesignVars BHD_Z_Sym ( DesVar1 =Main.Studies.ParameterIdentification.RBHD_Z, DesVar2 =Main.Studies.ParameterIdentification.LBHD_Z,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};
#endif


//// Thorax

#ifdef _STRN
// Marker on the Sternum
CreateMarkerDriver STRN (
MarkerPlacement=Trunk.SegmentsThorax.ThoraxSeg, 
OptX=ON,OptY=ON,OptZ=OFF,  
WeightX=1,WeightY=1,WeightZ=1,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.175,0.24,0.0};
};
#endif

#ifdef _CLAV
// Marker on the Clavicle
CreateMarkerDriver CLAV (
MarkerPlacement=Trunk.SegmentsThorax.ThoraxSeg, 
OptX=OFF,OptY=OFF,OptZ=OFF,  
WeightX=1,WeightY=1,WeightZ=1,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.11,0.42,0.0};
};
#endif

#ifdef _T10
// Marker on the Thoracic Vertebra 10
CreateMarkerDriver T10 (
MarkerPlacement=Trunk.SegmentsThorax.ThoraxSeg, 
OptX=OFF,OptY=ON,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.05,0.187,0};
};
#endif

#ifdef _C7
// Marker on the Cervical Vertebra 10
CreateMarkerDriver C7 (
MarkerPlacement=Trunk.SegmentsThorax.ThoraxSeg,
OptX=OFF,OptY=ON,OptZ=OFF,  
PlaceMarkerAt = T1C7JntNode,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.065, 0.00, 0};
};
#endif


//// Lower Extremity Markers
#ifdef _RTHI
// Marker on the Right Thigh
CreateMarkerDriver RTHI ( 
OptX=ON,OptY=ON,OptZ=ON,
MarkerPlacement =Right.Leg.Seg.Thigh,
UseC3DWeightResiduals=ON
)= {
  sRelOpt = {0.00, -0.15, 0.1};
};
#endif

#ifdef _RKNE
// Marker on the Right Knee
CreateMarkerDriver RKNE (
MarkerPlacement= Right.Leg.Seg.Thigh,
PlaceMarkerAt = EpicondylusFemorisLateralis,
OptX=OFF,OptY=OFF,OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.00, 0.0, 0.015};
};
#endif

#ifdef _RKJC
// Marker on the Right Knee joint center
CreateMarkerDriver RKJC (
MarkerPlacement= Right.Leg.Seg.Thigh,
PlaceMarkerAt = KneeJoint,
OptX=OFF,OptY=OFF,OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.00, 0.0, 0.0};
};
#endif


#ifdef _RTIB
// Marker on the Right Tibia
CreateMarkerDriver RTIB (
MarkerPlacement=Right.Leg.Seg.Shank,
OptX=ON,OptY=ON,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.0, -0.1, 0.05};
};
#endif

#ifdef _RANK
// Marker on the Right Lateral Ankle
CreateMarkerDriver RANK ( 
MarkerName= RANK ,
MarkerPlacement=Right.Leg.Seg.Shank,
PlaceMarkerAt = LateralMalleolus,
OptX=ON,OptY=ON,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.00, -0.0, 0.015};
};
#endif

#ifdef _RTOE
// Marker on the Right Toe
CreateMarkerDriver RTOE (
MarkerPlacement=Right.Leg.Seg.Foot,
PlaceMarkerAt = MetatarsalJoint1Node,
OptX=OFF , OptY=OFF , OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.015, 0.02, 0.00};
};
#endif

#ifdef _RHEE
// Marker on the Right Heel
CreateMarkerDriver RHEE (
MarkerName= RHEE ,
MarkerPlacement=Right.Leg.Seg.Foot,
PlaceMarkerAt = HeelNode,
OptX=OFF, OptY=OFF , OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt =  {-0.025, -0.0, -0.0};
};
#endif


// Marker on the Right Metatarsel 5
#ifdef _RMT5
CreateMarkerDriver RMT5 (
MarkerPlacement=Right.Leg.Seg.Foot, 
PlaceMarkerAt = MetatarsalJoint5Node,
OptX=OFF,OptY=OFF,OptZ=OFF,  
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt =  {0.0, 0.01, 0.015};
};
#endif

#ifdef _LTHI
// Marker on the Left Thigh
CreateMarkerDriver LTHI ( 
MarkerName= LTHI ,
MarkerPlacement=Left.Leg.Seg.Thigh,
OptX=ON,OptY=ON,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.0, -0.28, -0.1}; 
};
#endif

#ifdef _LKNE
// Marker on the Left Knee
CreateMarkerDriver LKNE ( 
MarkerName= LKNE ,
MarkerPlacement=Left.Leg.Seg.Thigh,
PlaceMarkerAt = EpicondylusFemorisLateralis,
OptX=OFF,OptY=OFF,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.00, -0.0, -0.015};
};
#endif


#ifdef _LKJC
// Marker on the Left Knee joint center
CreateMarkerDriver LKJC (
MarkerPlacement= Left.Leg.Seg.Thigh,
PlaceMarkerAt = KneeJoint,
OptX=OFF,OptY=OFF,OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.00, 0.0, 0.0};
};
#endif



#ifdef _LTIB
// Marker on the Left Tibia
CreateMarkerDriver LTIB (
MarkerPlacement=Left.Leg.Seg.Shank,
OptX=ON,OptY=ON,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.0, -0.1, -0.05};
};
#endif

#ifdef _LANK
// Marker on the Left Ankle
CreateMarkerDriver LANK (
MarkerPlacement=Left.Leg.Seg.Shank,
PlaceMarkerAt = LateralMalleolus,
OptX=ON,OptY=ON,OptZ=ON,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.0, -0.0, -0.015};
};
#endif

#ifdef _LTOE
// Marker on the Left Toe
CreateMarkerDriver LTOE (
MarkerPlacement=Left.Leg.Seg.Foot,
PlaceMarkerAt = MetatarsalJoint1Node,
OptX=OFF,OptY=OFF ,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.015, 0.02, 0.00};
};
#endif

#ifdef _LHEE
// Marker on the Left Heel
CreateMarkerDriver LHEE(
MarkerPlacement=Left.Leg.Seg.Foot,
PlaceMarkerAt = HeelNode,
OptX=OFF, OptY=OFF, OptZ=OFF,
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt =  {-0.025, -0.0, 0.0};
};
#endif

#ifdef _LMT5
// Marker on the Right Metatarsel 5
CreateMarkerDriver LMT5 (
MarkerPlacement=Left.Leg.Seg.Foot, 
PlaceMarkerAt = MetatarsalJoint5Node,
OptX=OFF,OptY=OFF,OptZ=OFF,  
WeightX=1.0,WeightY=1.0,WeightZ=1.0,
UseC3DWeightResiduals=ON
) = {
  sRelOpt =  {0.0, 0.01, -0.015};
};
#endif


//// Trunk markers

#ifdef _RSHO
CreateMarkerDriver RSHO (
MarkerPlacement=Right.ShoulderArm.Seg.Scapula, 
OptX=OFF,OptY=OFF,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
//  sRelOpt = {0.00,0.00,-0.015};
  sRelOpt =  {0.026, -0.01, -0.02};
  // Marker weight transition time.
};
#endif

#ifdef _LSHO
// Marker on the Left Acromio-clavicular joint
CreateMarkerDriver LSHO (
MarkerPlacement=Left.ShoulderArm.Seg.Scapula, 
OptX=OFF,OptY=OFF,OptZ=OFF,
UseC3DWeightResiduals=ON
) = {
//  sRelOpt = {0.00,-0.00,-0.015};
   sRelOpt =  {0.026, 0.01, -0.02};
};
#endif


#ifdef _RUPA
// Marker on the Right Upper Arm
CreateMarkerDriver RUPA (
MarkerPlacement=Right.ShoulderArm.Seg.Humerus, 
OptX=ON,OptY=ON,OptZ=ON,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt ={0.03,-0.24,0.01}; 
};
#endif


#ifdef _LUPA
// Marker on the Left Upper Arm
CreateMarkerDriver LUPA (
MarkerPlacement=Left.ShoulderArm.Seg.Humerus,
OptX=ON,OptY=ON,OptZ=ON,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt ={-0.03,-0.19,0.01}; 
};
#endif


#ifdef _RELB
// Marker on the Right Elbow
CreateMarkerDriver RELB (
MarkerPlacement=Right.ShoulderArm.Seg.Humerus, 
PlaceMarkerAt = fe,
OptX=OFF,OptY=OFF,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.045,0, 0.0};
};
#endif


#ifdef _LELB
// Marker on the Left Elbow
CreateMarkerDriver LELB (
MarkerPlacement=Left.ShoulderArm.Seg.Humerus, 
PlaceMarkerAt = fe,
OptX=OFF,OptY=OFF,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.045,0, 0.0};
};
#endif



#ifdef _LFRM
// Marker on the Left forearm
CreateMarkerDriver LFRM (
MarkerPlacement=Left.ShoulderArm.Seg.Ulna,
OptX=ON,OptY=ON,OptZ=ON,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.0, -0.17, 0.0};
};
#endif

#ifdef _RFRM
// Marker on the Right forearm
CreateMarkerDriver RFRM (
MarkerPlacement=Right.ShoulderArm.Seg.Ulna, 
OptX=ON,OptY=ON,OptZ=ON,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {0.0, 0.17, 0.0};
};
#endif


#ifdef _RWRA
// Marker on the Right Wrist A
CreateMarkerDriver RWRA (
MarkerPlacement=Right.ShoulderArm.Seg.Radius, 
PlaceMarkerAt = wj,
OptX=OFF,OptY=ON,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
    sRelOpt = {-0, -0.03, 0.00};

};
#endif

#ifdef _RWRB
// Marker on the Right Wrist B
CreateMarkerDriver RWRB (
MarkerPlacement=Right.ShoulderArm.Seg.Radius, 
PlaceMarkerAt = wj,
OptX=OFF ,OptY=ON,OptZ=OFF,  
WeightX=1,WeightY=1,WeightZ=1,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
    sRelOpt = {-0, 0.03, 0.00};
};
#endif


#ifdef _RWRA

#if (Protocol == FullBodyPlugInGait) |  (Protocol == UpperBodyPlugInGait)
LinkDesignVars RWand ( DesVar1 =Main.Studies.ParameterIdentification.RWRA_Y, DesVar2 =Main.Studies.ParameterIdentification.RWRB_Y,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};
#endif  

#endif

#ifdef _LWRA
// Marker on the Left Wrist A
CreateMarkerDriver LWRA (
MarkerPlacement=Left.ShoulderArm.Seg.Radius,
PlaceMarkerAt = wj,
OptX=OFF,OptY=ON,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
      sRelOpt = {-0, 0.03, 0.00};

};
#endif

#ifdef _LWRB
// Marker on the Left Wrist B
CreateMarkerDriver LWRB (
MarkerPlacement=Left.ShoulderArm.Seg.Radius, 
PlaceMarkerAt = wj,
OptX=OFF  ,OptY=ON ,OptZ=OFF,  
WeightX=1,WeightY=1,WeightZ=1,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
     sRelOpt = {-0, -0.03, 0.00};
};
#endif

#ifdef _LWRA
#if (Protocol == FullBodyPlugInGait) |  (Protocol == UpperBodyPlugInGait)
LinkDesignVars LWand (DesVar1 =Main.Studies.ParameterIdentification.LWRA_Y, DesVar2 =Main.Studies.ParameterIdentification.LWRB_Y,
Constraint_Type = EqualToZero, Coef1 = 1, Coef2= -1)={};
#endif  
#endif

#ifdef _RFIN


// Marker on the Right Finger
CreateMarkerDriver RFIN (
MarkerPlacement=Right.ShoulderArm.Seg.Hand, 
OptX=OFF ,OptY=OFF,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.095,-0.02,0.02};
};
#endif


#ifdef _LFIN
// Marker on the Left Finger
CreateMarkerDriver LFIN (
MarkerPlacement=Left.ShoulderArm.Seg.Hand, 
OptX=OFF ,OptY=OFF,OptZ=OFF,
FilterCutOffFrequency = MARKER_CUTOFF_ARMS,
UseC3DWeightResiduals=ON
) = {
  sRelOpt = {-0.095,-0.02,-0.02};
};
#endif