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Suggestions for annotations #49

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cnatalie opened this issue Dec 15, 2020 · 0 comments

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cnatalie commented Dec 15, 2020

Option to run annotate-snake and eukulele-snake rules on the mega-merged assembly only (1 job submission each instead of for all individual samples in the project).
Option to input the open reading frames (transdecoded .cds file) into annotate-snake rules instead of the {assembly}_merged.fasta files. Contigs may contain more than 1 ORF and the diamond alignment would only return 1 hit

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