diff --git a/ants/registration/interface.py b/ants/registration/interface.py index dd481e35..3777c347 100644 --- a/ants/registration/interface.py +++ b/ants/registration/interface.py @@ -66,7 +66,7 @@ def registration( See Notes below for more. initial_transform : list of strings (optional) - transforms to prepend + transforms to prepend. If None, a translation is computed to align the image centers of mass. outprefix : string output will be named with this prefix. @@ -193,10 +193,12 @@ def registration( with mutual information as optimization metric. - "SyNRA": Symmetric normalization: Rigid + Affine + deformable transformation, with mutual information as optimization metric. - - "SyNOnly": Symmetric normalization: no initial transformation, - with mutual information as optimization metric. Assumes - images are aligned by an inital transformation. Can be - useful if you want to run an unmasked affine followed by + - "SyNOnly": Symmetric normalization with no rigid or affine stages. + Uses mutual information as optimization metric. Affine alignment is + from the initial_transform arg, either provide the .mat from linear + registration or use initial_transform='Identity' if the images are + already affinely aligned. + Can be useful if you want to run an unmasked affine followed by masked deformable registration. - "SyNCC": SyN, but with cross-correlation as the metric. - "SyNabp": SyN optimized for abpBrainExtraction.