diff --git a/.github/workflows/stackhpc-all-in-one.yml b/.github/workflows/stackhpc-all-in-one.yml
index 5326c1be3..cae50d566 100644
--- a/.github/workflows/stackhpc-all-in-one.yml
+++ b/.github/workflows/stackhpc-all-in-one.yml
@@ -335,6 +335,17 @@ jobs:
         env:
           KAYOBE_AUTOMATION_SSH_PRIVATE_KEY: ${{ steps.ssh_key.outputs.ssh_key }}
 
+      - name: Run upgrade prerequisites
+        run: |
+          docker run -t --rm \
+            -v $(pwd):/stack/kayobe-automation-env/src/kayobe-config \
+            -e KAYOBE_ENVIRONMENT -e KAYOBE_VAULT_PASSWORD -e KAYOBE_AUTOMATION_SSH_PRIVATE_KEY \
+            ${{ steps.kayobe_image.outputs.kayobe_image }} \
+            /stack/kayobe-automation-env/src/kayobe-config/.automation/pipeline/script-run.sh tools/upgrade-prerequisites.sh
+        env:
+          KAYOBE_AUTOMATION_SSH_PRIVATE_KEY: ${{ steps.ssh_key.outputs.ssh_key }}
+        if: inputs.upgrade
+
       # If testing upgrade, checkout the current release branch
       # Stash changes to tracked files, and set clean=false to avoid removing untracked files.
       # Revert changes to RabbitMQ Queue types to avoid a merge conflict