From d913aa5b46fb658ea02a3250acb3125ab9896bdc Mon Sep 17 00:00:00 2001 From: "snakedeploy-bot[bot]" <115615832+snakedeploy-bot[bot]@users.noreply.github.com> Date: Fri, 31 Jan 2025 02:13:31 +0000 Subject: [PATCH 1/2] perf: update bio/deeptools/bampefragmentsize/environment.yaml. --- bio/deeptools/bampefragmentsize/environment.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bio/deeptools/bampefragmentsize/environment.yaml b/bio/deeptools/bampefragmentsize/environment.yaml index 65c1c44e665..7ea865e1844 100644 --- a/bio/deeptools/bampefragmentsize/environment.yaml +++ b/bio/deeptools/bampefragmentsize/environment.yaml @@ -3,4 +3,4 @@ channels: - bioconda - nodefaults dependencies: - - deeptools =3.5.5 + - deeptools =3.5.6 From fc47be0a92a17b551b88d4a8c59de41a59f125a8 Mon Sep 17 00:00:00 2001 From: "snakedeploy-bot[bot]" <115615832+snakedeploy-bot[bot]@users.noreply.github.com> Date: Fri, 31 Jan 2025 02:13:32 +0000 Subject: [PATCH 2/2] perf: update env pinning. --- .../environment.linux-64.pin.txt | 31 ++++++++++--------- 1 file changed, 16 insertions(+), 15 deletions(-) diff --git a/bio/deeptools/bampefragmentsize/environment.linux-64.pin.txt b/bio/deeptools/bampefragmentsize/environment.linux-64.pin.txt index 8fbbad566fe..aa73cb85caf 100644 --- a/bio/deeptools/bampefragmentsize/environment.linux-64.pin.txt +++ b/bio/deeptools/bampefragmentsize/environment.linux-64.pin.txt @@ -1,6 +1,7 @@ # This file may be used to create an environment using: # $ conda create --name --file # platform: linux-64 +# created-by: conda 24.9.2 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.12.14-hbcca054_0.conda#720523eb0d6a9b0f6120c16b2aa4e7de @@ -20,7 +21,7 @@ https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.6.3-hb9d3cd8_1.conda#2 https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.5.0-h851e524_0.conda#63f790534398730f59e1b899c3644d4a https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8 -https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_2.conda#04b34b9a40cdc48cfdab261ab176ff74 +https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.0-h7b32b05_1.conda#4ce6875f75469b2757a65e10a5d05e31 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-hb9d3cd8_1002.conda#b3c17d95b5a10c6e64a21fa17573e70e https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.12-hb9d3cd8_0.conda#f6ebe2cb3f82ba6c057dde5d9debe4f7 @@ -35,8 +36,8 @@ https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2# https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_1.conda#f1fd30127802683586f768875127a987 https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7 -https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.45-h943b412_0.conda#85cbdaacad93808395ac295b5667d25b -https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.48.0-hee588c1_0.conda#84bd1c9a82b455e7a2f390375fb38f90 +https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.46-h943b412_0.conda#adcf7bacff219488e29cfa95a2abd8f7 +https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.48.0-hee588c1_1.conda#3fa05c528d8a1e2a67bbf1e36f22d3bc https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hf672d98_0.conda#be2de152d8073ef1c01b7728475f2fe7 https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b @@ -61,20 +62,20 @@ https://conda.anaconda.org/conda-forge/noarch/certifi-2024.12.14-pyhd8ed1ab_0.co https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.1-pyhd8ed1ab_0.conda#e83a31202d1c0a000fce3e9cf3825875 https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_1.conda#962b9857ee8e7018c22f2776ffa0b2d7 https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_1.conda#44600c4667a319d67dbe0681fc0bc833 -https://conda.anaconda.org/bioconda/linux-64/deeptoolsintervals-0.1.9-py312ha9c1134_10.tar.bz2#4a4fd1606f7a44743001f4f6696c219b +https://conda.anaconda.org/bioconda/linux-64/deeptoolsintervals-0.1.9-py312ha9c1134_11.tar.bz2#8925c655b0f2d42cbe3f65a2a54f355c https://conda.anaconda.org/conda-forge/noarch/docutils-0.21.2-pyhd8ed1ab_1.conda#24c1ca34138ee57de72a943237cde4cc -https://conda.anaconda.org/conda-forge/noarch/hpack-4.0.0-pyhd8ed1ab_1.conda#2aa5ff7fa34a81b9196532c84c10d865 -https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.0.1-pyhd8ed1ab_1.conda#566e75c90c1d0c8c459eb0ad9833dc7a +https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda#0a802cb9888dd14eeefc611f05c40b6e +https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda#8e6923fc12f1fe8f8c4e5c9f343256ac https://conda.anaconda.org/conda-forge/noarch/idna-3.10-pyhd8ed1ab_1.conda#39a4f67be3286c86d696df570b1201b7 https://conda.anaconda.org/conda-forge/noarch/imagesize-1.4.1-pyhd8ed1ab_0.tar.bz2#7de5386c8fea29e76b303f37dde4c352 https://conda.anaconda.org/conda-forge/linux-64/kiwisolver-1.4.8-py312h84d6215_0.conda#6713467dc95509683bfa3aca08524e8a -https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-26_linux64_openblas.conda#ac52800af2e0c0e7dac770b435ce768a +https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-28_h59b9bed_openblas.conda#73e2a99fdeb8531d50168987378fda8a https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.11.1-h332b0f4_0.conda#2b3e0081006dc21e8bf53a91c83a055c https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.7.0-hd9ff511_3.conda#0ea6510969e1296cc19966fad481f6de https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.2-py312h178313f_1.conda#eb227c3e0bf58f5bd69c0532b157975b https://conda.anaconda.org/conda-forge/noarch/munkres-1.1.4-pyh9f0ad1d_0.tar.bz2#2ba8498c1018c1e9c61eb99b973dfe19 https://conda.anaconda.org/conda-forge/noarch/packaging-24.2-pyhd8ed1ab_2.conda#3bfed7e6228ebf2f7b9eaa47f1b4e2aa -https://conda.anaconda.org/bioconda/linux-64/py2bit-0.3.0-py312h0fa9677_11.tar.bz2#55bf99dfc8697400fa0ee77050a0ed59 +https://conda.anaconda.org/bioconda/linux-64/py2bit-0.3.3-py312h0fa9677_1.tar.bz2#dc40fefdfcacc9266b3604d21fb17d9d https://conda.anaconda.org/conda-forge/noarch/pycparser-2.22-pyh29332c3_1.conda#12c566707c80111f9799308d9e265aef https://conda.anaconda.org/conda-forge/noarch/pygments-2.19.1-pyhd8ed1ab_0.conda#232fb4577b6687b2d503ef8e254270c9 https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.2.1-pyhd8ed1ab_0.conda#285e237b8f351e85e7574a2c7bfa6d46 @@ -92,15 +93,15 @@ https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_1.conda#75 https://conda.anaconda.org/conda-forge/noarch/zipp-3.21.0-pyhd8ed1ab_1.conda#0c3cc595284c5e8f0f9900a9b228a332 https://conda.anaconda.org/conda-forge/noarch/babel-2.16.0-pyhd8ed1ab_1.conda#3e23f7db93ec14c80525257d8affac28 https://conda.anaconda.org/conda-forge/linux-64/cffi-1.17.1-py312h06ac9bb_0.conda#a861504bbea4161a9170b85d4d2be840 -https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.55.3-py312h178313f_1.conda#bc18c46eda4c2b29431981998507e723 +https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.55.8-py312h178313f_0.conda#0fd0743b6d43989c07e41da61f67c41c https://conda.anaconda.org/conda-forge/noarch/h2-4.1.0-pyhd8ed1ab_1.conda#825927dc7b0f287ef8d4d0011bb113b1 -https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-8.5.0-pyha770c72_1.conda#315607a3030ad5d5227e76e0733798ff +https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-8.6.1-pyha770c72_0.conda#f4b39bf00c69f56ac01e020ebfac066c https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.5-pyhd8ed1ab_0.conda#2752a6ed44105bfb18c9bef1177d9dcd https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.16-hb7c19ff_0.conda#51bb7010fc86f70eee639b4bb7a894f5 -https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-26_linux64_openblas.conda#ebcc5f37a435aa3c19640533c82f8d76 -https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-26_linux64_openblas.conda#3792604c43695d6a273bc5faaac47d48 +https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-28_he106b2a_openblas.conda#4e20a1c00b4e8a984aac0f6cce59e3ac +https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-28_h7ac8fdf_openblas.conda#069f40bfbf1dc55c83ddb07fc6a6ef8d https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.3-h5fbd93e_0.conda#9e5816bc95d285c115a3ebc2f8563564 -https://conda.anaconda.org/conda-forge/noarch/pip-24.3.1-pyh8b19718_2.conda#04e691b9fadd93a8a9fad87a81d4fd8f +https://conda.anaconda.org/conda-forge/noarch/pip-25.0-pyh8b19718_0.conda#c2548760a02ed818f92dd0d8c81b55b4 https://conda.anaconda.org/conda-forge/noarch/plotly-5.24.1-pyhd8ed1ab_1.conda#71ac632876630091c81c50a05ec5e030 https://conda.anaconda.org/bioconda/linux-64/pysam-0.22.1-py312h47d5410_3.tar.bz2#097eddb7479ce49b12472e9ea2b0e8e8 https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0.post0-pyhff2d567_1.conda#5ba79d7c71f03c678c8ead841f347d6e @@ -108,12 +109,12 @@ https://conda.anaconda.org/conda-forge/linux-64/numpy-2.2.2-py312h72c5963_0.cond https://conda.anaconda.org/conda-forge/linux-64/pillow-11.1.0-py312h80c1187_0.conda#d3894405f05b2c0f351d5de3ae26fa9c https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.23.0-py312hef9b889_1.conda#8b7069e9792ee4e5b4919a7a306d2e67 https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.3.1-py312h68727a3_0.conda#f5fbba0394ee45e9a64a73c2a994126a -https://conda.anaconda.org/bioconda/linux-64/pybigwig-0.3.23-py312h0e9d276_0.tar.bz2#41d3a8256dbcf8629b08c64e6943c2f5 +https://conda.anaconda.org/bioconda/linux-64/pybigwig-0.3.24-py312h0e9d276_0.tar.bz2#dc58861363cb3a8b3daaf4f9bfa6e1d7 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.15.1-py312h180e4f1_0.conda#355bcf0f629159c9bd10a406cd8b6c3a https://conda.anaconda.org/conda-forge/noarch/urllib3-2.3.0-pyhd8ed1ab_0.conda#32674f8dbfb7b26410ed580dd3c10a29 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.10.0-py312hd3ec401_0.conda#c27a17a8c54c0d35cf83bbc0de8f7f77 https://conda.anaconda.org/conda-forge/noarch/requests-2.32.3-pyhd8ed1ab_1.conda#a9b9368f3701a417eac9edbcae7cb737 -https://conda.anaconda.org/bioconda/noarch/deeptools-3.5.5-pyhdfd78af_0.tar.bz2#87a4bd9512e17fb7633a1386dbea5125 +https://conda.anaconda.org/bioconda/noarch/deeptools-3.5.6-pyhdfd78af_0.tar.bz2#07662d27a3212a1aa674a6bae4688bbd https://conda.anaconda.org/conda-forge/noarch/numpydoc-1.8.0-pyhd8ed1ab_1.conda#5af206d64d18d6c8dfb3122b4d9e643b https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-applehelp-2.0.0-pyhd8ed1ab_1.conda#16e3f039c0aa6446513e94ab18a8784b https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-devhelp-2.0.0-pyhd8ed1ab_1.conda#910f28a05c178feba832f842155cbfff