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pato-edit.obo
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format-version: 1.2
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
subsetdef: cell_quality "cell_quality"
subsetdef: disposition_slim "Disposition slim"
subsetdef: hpo_slim "Human phenotype slim"
subsetdef: mpath_slim "Pathology slim"
subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist"
subsetdef: scalar_slim "Scalar slim"
subsetdef: value_slim "Value slim"
default-namespace: quality
import: http://purl.obolibrary.org/obo/pato/components/pato_ext.owl
import: http://purl.obolibrary.org/obo/pato/imports/merged_import.owl
ontology: pato
property_value: http://purl.org/dc/elements/1.1/description "An ontology of phenotypic qualities (properties, attributes or characteristics)." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And Trait Ontology" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
property_value: IAO:0000700 PATO:0000001
[Term]
id: PATO:0000000
name: obsolete pato
is_obsolete: true
[Term]
id: PATO:0000001
name: quality
alt_id: PATO:0000072
def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG]
[Term]
id: PATO:0000002
name: obsolete value
is_obsolete: true
[Term]
id: PATO:0000003
name: obsolete assay
is_obsolete: true
[Term]
id: PATO:0000004
name: mobility
def: "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG]
comment: Should be defined using translocation.
subset: attribute_slim
subset: disposition_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000005
name: obsolete absolute activity
is_obsolete: true
[Term]
id: PATO:0000006
name: obsolete process
is_obsolete: true
[Term]
id: PATO:0000007
name: obsolete relative activity
is_obsolete: true
[Term]
id: PATO:0000008
name: speed
def: "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position." [Wikipedia:http\://en.wikipedia.org/wiki/Velocity]
subset: attribute_slim
subset: scalar_slim
synonym: "velocity" RELATED []
is_a: PATO:0001906 ! movement quality
[Term]
id: PATO:0000009
name: obsolete absolute speed
is_obsolete: true
[Term]
id: PATO:0000010
name: obsolete relative speed
is_obsolete: true
[Term]
id: PATO:0000011
name: age
def: "A time quality inhering in a bearer by virtue of how long the bearer has existed." [WordNet:WordNet]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0000165 ! time
[Term]
id: PATO:0000012
name: obsolete absolute age
is_obsolete: true
[Term]
id: PATO:0000013
name: obsolete relative age
is_obsolete: true
[Term]
id: PATO:0000014
name: color
alt_id: PATO:0000020
def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG]
subset: attribute_slim
synonym: "colour" EXACT []
synonym: "relative color" EXACT []
is_a: PATO:0000051 ! morphology
is_a: PATO:0001300 ! optical quality
[Term]
id: PATO:0000015
name: color hue
def: "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra." [PATOC:cjm]
subset: attribute_slim
is_a: PATO:0001301 ! chromatic property
[Term]
id: PATO:0000016
name: color brightness
def: "A scalar optical property that is the intensity, value or amount of perceived light." [PATOC:MAH]
comment: Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch.
subset: attribute_slim
synonym: "color intensity" EXACT []
synonym: "color lightness" EXACT []
synonym: "color value" EXACT []
is_a: PATO:0001300 ! optical quality
[Term]
id: PATO:0000017
name: color saturation
def: "A scalar chromatic property that is the degree of purity of perceived light." [PATOC:GVG]
comment: Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity.
subset: attribute_slim
is_a: PATO:0001301 ! chromatic property
[Term]
id: PATO:0000018
name: fluorescence
def: "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0001296 ! luminous flux
[Term]
id: PATO:0000019
name: color pattern
def: "A chromatic property that is the relative position of different hues or degrees of saturation." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0000060 ! spatial pattern
[Term]
id: PATO:0000021
name: compatibility
def: "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence." [PATOC:GVG]
comment: Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality.
subset: attribute_slim
subset: disposition_slim
subset: relational_slim
is_a: PATO:0000186 ! behavioral quality
[Term]
id: PATO:0000022
name: obsolete gametophytic compatability
is_obsolete: true
[Term]
id: PATO:0000023
name: obsolete relative compatability
is_obsolete: true
[Term]
id: PATO:0000024
name: obsolete sporophytic compatability
is_obsolete: true
[Term]
id: PATO:0000025
name: composition
alt_id: PATO:0002015
def: "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts." [PATOC:GVG]
comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood).
subset: attribute_slim
subset: scalar_slim
synonym: "composed of" EXACT []
synonym: "compositionality" EXACT []
synonym: "content" EXACT []
synonym: "structure, composition" EXACT []
is_a: PATO:0000141 ! structure
[Term]
id: PATO:0000026
name: obsolete carbohydrate composition
is_obsolete: true
[Term]
id: PATO:0000027
name: obsolete electrolyte composition
is_obsolete: true
[Term]
id: PATO:0000028
name: obsolete macromolecular composition
is_obsolete: true
[Term]
id: PATO:0000029
name: obsolete protein composition
is_obsolete: true
[Term]
id: PATO:0000030
name: obsolete enzyme composition
is_obsolete: true
[Term]
id: PATO:0000031
name: obsolete metabolite composition
is_obsolete: true
[Term]
id: PATO:0000032
name: obsolete secondary product composition
is_obsolete: true
[Term]
id: PATO:0000033
name: concentration of
def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration]
subset: attribute_slim
subset: relational_slim
subset: scalar_slim
synonym: "concentration" EXACT []
is_a: PATO:0000070 ! amount
[Term]
id: PATO:0000034
name: obsolete protein concentration
is_obsolete: true
[Term]
id: PATO:0000035
name: obsolete carbohydrate concentration
is_obsolete: true
[Term]
id: PATO:0000036
name: obsolete water content
is_obsolete: true
[Term]
id: PATO:0000037
name: consistency
def: "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity." [PATOC:GVG]
subset: attribute_slim
subset: mpath_slim
synonym: "firmness" RELATED []
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000038
name: obsolete gel consistency
is_obsolete: true
[Term]
id: PATO:0000039
name: direction
def: "A physical quality inhering in a bearer by virtue of the bearer's orientation in space." [thesaurus.maths:thesaurus.maths]
comment: TODO: consider merging with angular placement.
subset: attribute_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000040
name: distance
def: "A quality that is the extent of space between two entities." [PATOC:GVG]
subset: attribute_slim
subset: relational_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000041
name: obsolete absolutedistance
is_obsolete: true
[Term]
id: PATO:0000042
name: obsolete relative distance
is_obsolete: true
[Term]
id: PATO:0000043
name: flavor
def: "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors." [PATOC:GVG]
subset: attribute_slim
subset: relational_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000044
name: frequency
def: "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time." [Wikipedia:http\://en.wikipedia.org/wiki/frequency]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0050000 ! rate of occurence
[Term]
id: PATO:0000045
name: obsolete absolute frequency
is_obsolete: true
[Term]
id: PATO:0000046
name: obsolete relative frequency
is_obsolete: true
[Term]
id: PATO:0000047
name: biological sex
def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved." [MGED:MGED]
subset: attribute_slim
is_a: PATO:0001995 ! organismal quality
[Term]
id: PATO:0000048
name: hardness
def: "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced" [merriam-webster:merriam-webster]
subset: attribute_slim
subset: disposition_slim
synonym: "impenetrability" RELATED []
synonym: "toughness" RELATED []
is_a: PATO:0001546 ! quality of a solid
[Term]
id: PATO:0000049
name: intensity
def: "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force." [PATOC:GVG]
subset: attribute_slim
subset: hpo_slim
is_a: PATO:0000068 ! qualitative
[Term]
id: PATO:0000050
name: life span
def: "A time quality inhering in a bearer by virtue of the bearer's expected maximum age." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0000165 ! time
[Term]
id: PATO:0000051
name: morphology
def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0001241 ! physical object quality
[Term]
id: PATO:0000052
name: shape
alt_id: PATO:0001647
def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG]
comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.
subset: attribute_slim
synonym: "relational shape quality" EXACT []
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000054
name: obsolete absolute number
is_obsolete: true
[Term]
id: PATO:0000055
name: obsolete relative number
is_obsolete: true
[Term]
id: PATO:0000056
name: trophic quality
def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Trophic_level]
subset: attribute_slim
subset: disposition_slim
synonym: "nutritional quality" RELATED []
is_a: PATO:0001995 ! organismal quality
[Term]
id: PATO:0000057
name: occurrence
alt_id: PATO:0000156
alt_id: PATO:0000158
def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." [PATOC:GVG]
subset: attribute_slim
subset: hpo_slim
synonym: "incidence" EXACT []
synonym: "temporal" BROAD []
is_a: PATO:0002323 ! temporal distribution quality
[Term]
id: PATO:0000058
name: odor
def: "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000059
name: obsolete parental quality
def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent." [WordNet:WordNet]
subset: attribute_slim
synonym: "parental type" EXACT []
is_obsolete: true
[Term]
id: PATO:0000060
name: spatial pattern
alt_id: PATO:0000132
alt_id: PATO:0001565
def: "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." [PATOC:GVG]
subset: attribute_slim
subset: hpo_slim
synonym: "distribution" EXACT []
synonym: "pattern" RELATED []
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000061
name: obsolete relative pattern
is_obsolete: true
[Term]
id: PATO:0000062
name: sleep pattern
def: "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0001530 ! behavioral quality of a process
[Term]
id: PATO:0000063
name: obsolete percentage
is_obsolete: true
[Term]
id: PATO:0000064
name: obsolete absolute percentage
is_obsolete: true
[Term]
id: PATO:0000065
name: obsolete relative percentage
is_obsolete: true
[Term]
id: PATO:0000066
name: pilosity
def: "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0000150 ! texture
[Term]
id: PATO:0000067
name: obsolete relative pilosity
is_obsolete: true
[Term]
id: PATO:0000068
name: qualitative
def: "A quality of an entity that is descriptive or observational, typically not represented numerically." [https://libguides.macalester.edu/c.php?g=527786&p=3608639, https://www.ncbi.nlm.nih.gov/books/NBK470395/]
comment: TODO: define this or obsolete it and move children somewhere else.
is_a: PATO:0000001 ! quality
[Term]
id: PATO:0000069
name: deviation (from_normal)
def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0000068 ! qualitative
[Term]
id: PATO:0000070
name: amount
alt_id: PATO:0000053
alt_id: PATO:0000071
alt_id: PATO:0001169
alt_id: PATO:0001226
def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG]
comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.
subset: attribute_slim
synonym: "count in organism" RELATED []
synonym: "number" RELATED []
synonym: "presence" RELATED []
synonym: "presence or absence in organism" EXACT []
synonym: "quantitative" EXACT []
is_a: PATO:0103000 ! quantitative
relationship: RO:0015012 PATO:0001555 ! reciprocal of has number of
[Term]
id: PATO:0000073
name: obsolete relative_quality
is_obsolete: true
[Term]
id: PATO:0000074
name: obsolete shattering
is_obsolete: true
[Term]
id: PATO:0000075
name: obsolete threshability
is_obsolete: true
[Term]
id: PATO:0000076
name: obsolete regulation
is_obsolete: true
[Term]
id: PATO:0000077
name: response to
def: "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG]
subset: attribute_slim
subset: disposition_slim
subset: relational_slim
subset: scalar_slim
synonym: "reactivity" RELATED [GOC:CJM]
synonym: "response" RELATED []
synonym: "responsivity" RELATED []
is_a: PATO:0001995 ! organismal quality
[Term]
id: PATO:0000078
name: rhythm quality
def: "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions." [answers.com:answers.com]
subset: attribute_slim
is_a: PATO:0002323 ! temporal distribution quality
[Term]
id: PATO:0000079
name: obsolete absolute rhythym
is_obsolete: true
[Term]
id: PATO:0000080
name: amplitude
def: "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place." [thesaurus.maths:thesaurus.maths]
subset: attribute_slim
is_a: PATO:0002062 ! physical quality of a process
[Term]
id: PATO:0000082
name: persistence
def: "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm." [reference.com:reference.com]
subset: attribute_slim
is_a: PATO:0000078 ! rhythm quality
[Term]
id: PATO:0000083
name: phase
def: "A quality that exists by virtue of being a particular point in the time of a cycle." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0002323 ! temporal distribution quality
[Term]
id: PATO:0000084
name: obsolete relative rhythym
is_obsolete: true
[Term]
id: PATO:0000085
name: sensitivity toward
def: "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation." [PATOC:GVG]
subset: attribute_slim
subset: disposition_slim
subset: relational_slim
synonym: "sensitivity" EXACT []
is_a: PATO:0001995 ! organismal quality
[Term]
id: PATO:0000086
name: obsolete absolute sensitivity
is_obsolete: true
[Term]
id: PATO:0000087
name: obsolete disease sensitivity
is_obsolete: true
[Term]
id: PATO:0000088
name: obsolete absolute disease sensitivity
is_obsolete: true
[Term]
id: PATO:0000089
name: obsolete relative disease sensitivity
is_obsolete: true
[Term]
id: PATO:0000090
name: obsolete relative sensitivity
is_obsolete: true
[Term]
id: PATO:0000091
name: obsolete stress sensitivity
is_obsolete: true
[Term]
id: PATO:0000092
name: obsolete abiotic stress sensitivity
is_obsolete: true
[Term]
id: PATO:0000093
name: obsolete chemical sensitivity
is_obsolete: true
[Term]
id: PATO:0000094
name: obsolete drug sensitivity
is_obsolete: true
[Term]
id: PATO:0000095
name: obsolete absolute drug sensitivity
is_obsolete: true
[Term]
id: PATO:0000096
name: obsolete relative drug sensitivity
is_obsolete: true
[Term]
id: PATO:0000097
name: obsolete herbicide sensitivity
is_obsolete: true
[Term]
id: PATO:0000098
name: obsolete insecticide sensitivity
is_obsolete: true
[Term]
id: PATO:0000099
name: obsolete plant growth hormone sensitivity
is_obsolete: true
[Term]
id: PATO:0000100
name: obsolete soil composition sensitivity
is_obsolete: true
[Term]
id: PATO:0000101
name: obsolete soil nutrient sensitivity
is_obsolete: true
[Term]
id: PATO:0000102
name: obsolete macronutrient sensitivity
is_obsolete: true
[Term]
id: PATO:0000103
name: obsolete micronutrient sensitivity
is_obsolete: true
[Term]
id: PATO:0000104
name: obsolete osmotic response sensitivity
is_obsolete: true
[Term]
id: PATO:0000105
name: obsolete p h sensitivity
is_obsolete: true
[Term]
id: PATO:0000106
name: obsolete acid sensitivity
is_obsolete: true
[Term]
id: PATO:0000107
name: obsolete alkali sensitivity
is_obsolete: true
[Term]
id: PATO:0000108
name: obsolete salt sensitivity
is_obsolete: true
[Term]
id: PATO:0000109
name: obsolete water sensitivity
is_obsolete: true
[Term]
id: PATO:0000110
name: obsolete drought sensitivity
is_obsolete: true
[Term]
id: PATO:0000111
name: obsolete flooding sensitivity
is_obsolete: true
[Term]
id: PATO:0000112
name: obsolete humidity sensitivity
is_obsolete: true
[Term]
id: PATO:0000113
name: obsolete radiation sensitivity
is_obsolete: true
[Term]
id: PATO:0000114
name: obsolete temperature sensitivity
is_obsolete: true
[Term]
id: PATO:0000115
name: obsolete absolute temperature sensitivity
is_obsolete: true
[Term]
id: PATO:0000116
name: obsolete relative temperature sensitivity
is_obsolete: true
[Term]
id: PATO:0000117
name: size
def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000118
name: obsolete absolute size
is_obsolete: true
[Term]
id: PATO:0000119
name: height
def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001708 ! 1-D extent
[Term]
id: PATO:0000120
name: obsolete absolute height
is_obsolete: true
[Term]
id: PATO:0000121
name: obsolete relative height
is_obsolete: true
[Term]
id: PATO:0000122
name: length
def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG]
comment: Length often refers to the longer or longest dimension of an object, however, this is not always true. See https://github.com/pato-ontology/pato/issues/337 for full discussion.
subset: attribute_slim
subset: mpath_slim
subset: scalar_slim
is_a: PATO:0001708 ! 1-D extent
property_value: seeAlso "https://github.com/pato-ontology/pato/issues/337" xsd:string
[Term]
id: PATO:0000123
name: obsolete absolute length
is_obsolete: true
[Term]
id: PATO:0000124
name: obsolete relative length
is_obsolete: true
[Term]
id: PATO:0000125
name: mass
def: "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." [PATOC:GVG]
comment: For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism.
subset: attribute_slim
subset: relational_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000126
name: obsolete absolute mass
is_obsolete: true
[Term]
id: PATO:0000127
name: obsolete relative mass
is_obsolete: true
[Term]
id: PATO:0000128
name: weight
def: "A physical quality inhering in a bearer that has mass near a gravitational body. Important usage note: Note that this ontology has a class for a similar concept, mass (PATO:0000125). Mass and weight are not equivalent. For most use cases, the class mass is strongly preferred over weight." [https://en.wikipedia.org/wiki/Mass#Weight_vs._mass, Wikipedia:http\://en.wikipedia.org/wiki/Weight]
comment: For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism.
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001035 ! force
[Term]
id: PATO:0000129
name: obsolete absolute weight
is_obsolete: true
[Term]
id: PATO:0000130
name: obsolete relative weight
is_obsolete: true
[Term]
id: PATO:0000131
name: obsolete relative size
is_obsolete: true
[Term]
id: PATO:0000133
name: orientation
alt_id: PATO:0000137
def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE]
subset: attribute_slim
subset: relational_slim
synonym: "amount of rotation" RELATED []
synonym: "angle" RELATED []
synonym: "angular magnitude" RELATED []
synonym: "angular placement" EXACT []
synonym: "plane angle" RELATED []
is_a: PATO:0000140 ! position
[Term]
id: PATO:0000134
name: obsolete absolute_angle
is_obsolete: true
[Term]
id: PATO:0000135
name: obsolete relative_angle
is_obsolete: true
[Term]
id: PATO:0000136
name: closure
def: "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent." [PATOC:CJM, PATOC:GVG]
subset: attribute_slim
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000138
name: obsolete absolute orientation
is_obsolete: true
[Term]
id: PATO:0000139
name: obsolete relative orientation
is_obsolete: true
[Term]
id: PATO:0000140
name: position
alt_id: PATO:0001032
alt_id: PATO:0001631
def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG]
subset: attribute_slim
synonym: "location" EXACT []
synonym: "placement" EXACT []
synonym: "relational spatial quality" EXACT []
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000141
name: structure
alt_id: PATO:0001452
def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG]
subset: attribute_slim
synonym: "conformation" BROAD [VT:1000738]
synonym: "relational structural quality" EXACT []
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000142
name: obsolete substance
is_obsolete: true
[Term]
id: PATO:0000143
name: obsolete addictive substance
is_obsolete: true
[Term]
id: PATO:0000144
name: obsolete solid substance
comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'
is_obsolete: true
[Term]
id: PATO:0000145
name: obsolete liquid substance
comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '
is_obsolete: true
[Term]
id: PATO:0000146
name: temperature
def: "A physical quality of the thermal energy of a system." [PATOC:GVG]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0001018 ! physical quality
[Term]
id: PATO:0000147
name: obsolete absolute temperature
is_obsolete: true
[Term]
id: PATO:0000148
name: obsolete body temperature
is_obsolete: true
[Term]
id: PATO:0000149
name: obsolete relative temperature
is_obsolete: true
[Term]
id: PATO:0000150
name: texture
def: "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." [PATOC:GVG]
subset: attribute_slim
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000151
name: obsolete relative texture
is_obsolete: true
[Term]
id: PATO:0000152
name: threshold
def: "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit." [PATOC:GVG]
subset: attribute_slim
subset: disposition_slim
subset: relational_slim
is_a: PATO:0000085 ! sensitivity toward
[Term]
id: PATO:0000153
name: obsolete absolute threshold
is_obsolete: true
[Term]
id: PATO:0000154
name: obsolete pain threshold
is_obsolete: true
[Term]
id: PATO:0000155
name: obsolete relative threshold
is_obsolete: true
[Term]
id: PATO:0000157
name: obsolete absolute temporal
is_obsolete: true
[Term]
id: PATO:0000159
name: obsolete absolute incidence
is_obsolete: true
[Term]
id: PATO:0000160
name: obsolete relative incidence
is_obsolete: true
[Term]
id: PATO:0000161
name: rate
def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa]
subset: attribute_slim
subset: scalar_slim
is_a: PATO:0002062 ! physical quality of a process
[Term]
id: PATO:0000162