Skip to content

@CDCgov Centers for Disease Control and Prevention

Change the repository type filter

All

    Repositories list

    426 repositories

    • prime-simplereport-site

      Public
      Landing / marketing site for the SimpleReport application
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •11•11•5•3•Updated Feb 3, 2025Feb 3, 2025

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •13•46•83•8•Updated Feb 3, 2025Feb 3, 2025

    • cfa-azuretools

      Public
      Python
      •3•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •5•6•0•0•Updated Feb 3, 2025Feb 3, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •21•63•15•1•Updated Feb 3, 2025Feb 3, 2025

    • NEDSS-Modernization

      Public
      Java
      •4•19•0•4•Updated Feb 3, 2025Feb 3, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •3•2•0•0•Updated Feb 2, 2025Feb 2, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •2•14•25•5•Updated Feb 2, 2025Feb 2, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •42•76•1.2k•158•Updated Feb 2, 2025Feb 2, 2025

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •3•1•16•2•Updated Feb 2, 2025Feb 2, 2025

    • trusted-intermediary

      Public
      Bringing together healthcare partners by reducing the connection burden.
      Groovy
      •
      Apache License 2.0
      •10•11•148•5•Updated Feb 2, 2025Feb 2, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •59•60•201•14•Updated Feb 2, 2025Feb 2, 2025

    • forecasttools-py

      Public
      A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.
      infrastructureautomationabstractionforecastinginfectious-disease-modeling
      Python
      •
      Apache License 2.0
      •2•6•10•2•Updated Feb 1, 2025Feb 1, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •4•2•0•10•Updated Feb 1, 2025Feb 1, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •2•0•0•1•Updated Feb 1, 2025Feb 1, 2025

    • RSTr

      Public
      Rate Stabilizing Tool R Package: Gibbs Samplers for Bayesian Spatiotemporal CAR Models
      spatialbayesianspatiotemporalgibbsareal
      R
      •
      Apache License 2.0
      •3•2•0•1•Updated Jan 31, 2025Jan 31, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•7•55•7•Updated Jan 31, 2025Jan 31, 2025

    • cladecombiner

      Public
      Python
      •
      Apache License 2.0
      •2•1•11•2•Updated Jan 31, 2025Jan 31, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •4•5•42•7•Updated Jan 31, 2025Jan 31, 2025

    • cfa-gam-rt

      Public
      R package for real-time Rt estimation with penalized splines
      R
      •
      Apache License 2.0
      •4•13•23•0•Updated Jan 31, 2025Jan 31, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •2•3•19•3•Updated Jan 31, 2025Jan 31, 2025

    • cfa-rt-postprocessing

      Public
      Python
      •
      Apache License 2.0
      •2•1•11•1•Updated Jan 31, 2025Jan 31, 2025

    • NEDSS-DataIngestion

      Public
      Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      •
      Apache License 2.0
      •4•6•0•7•Updated Jan 31, 2025Jan 31, 2025

    • dibbs-vm

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •3•0•31•4•Updated Jan 31, 2025Jan 31, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •22•38•0•8•Updated Jan 31, 2025Jan 31, 2025

    • data-exchange-processing-status

      Public
      The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      •
      Apache License 2.0
      •2•2•0•1•Updated Jan 31, 2025Jan 31, 2025

    • Rnssp-shiny-apps

      Public
      Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.
      shinyshiny-appscdcessencensspessence-apinssp-cop
      R
      •
      Apache License 2.0
      •6•9•4•0•Updated Jan 31, 2025Jan 31, 2025

    • data-exchange-upload

      Public
      The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      •
      Apache License 2.0
      •5•9•42•19•Updated Jan 31, 2025Jan 31, 2025

    • seqsender

      Public
      Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
      bioinformatics-pipelinegenbankncbi-submissionncbi-genbankcdcsrancbi-srancbi-biosamplesgisaidgisaid-uploader
      Python
      •
      Apache License 2.0
      •13•34•5•0•Updated Jan 31, 2025Jan 31, 2025

    • polkapox

      Public
      Python
      •
      Apache License 2.0
      •4•8•14•3•Updated Jan 31, 2025Jan 31, 2025