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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<title>Nicholas Tatonetti Curriculum Vitae - Updated December 2022</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link rel="shortcut icon" href="/files/tatonetti_favicon.ico" type="image/x-icon" />
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<div class="title">
<h1>NICHOLAS TATONETTI, Ph.D.</h1>
Department of Computational Biomedicine, & <br/>
Cedars-Sinai Cancer<br/>
Cedars-Sinai Medical Center<br/>
700 N. San Vicente Blvd., Suite 540<br/>
West Hollywood, CA 90069<br/>
[email protected]<br/>
<a href="http://tatonettilab.org">tatonettilab.org</a><br/>
</div>
<!-- EDUCATION -->
<h2>Education</h2>
<div class="section">
<div class="item">
<b>Stanford University</b>, Stanford, CA 2008-2012<br/>
<div class="indent">Ph.D. in Biomedical Informatics, June 2012</div>
<div class="indent">M.S. in Biomedical Informatics, December 2011</div>
</div>
<div class="item">
<b>Arizona State University</b>, Tempe, AZ 2005-2008<br/>
<div class="indent">B.S. <i>Summa Cum Laude</i> in Computational Mathematics, May 2008</div>
<div class="indent">B.S. <i>Summa Cum Laude</i> in Molecular Biosciences/Biotechnology, May 2008</div>
</div>
</div>
<h2>Professional Experience</h2>
<div class="section">
<p>
<b>Cedars-Sinai Medical Center</b>, Los Angeles, CA<br/>
Professor of Computational Biomedicine, 2023-Current<br/>
Vice Chair, Operations, Department of Computational Biomedicine, 2023-Current<br/>
Associate Director, Computational Oncology, Cedars-Sinai Cancer, 2023-Current<br/>
</p>
<p>
<b>Columbia University</b>, New York, NY<br/>
Chief Officer for Cancer Data Science, Herbert Irving Comprehensive Cancer Center, 2022<br/>
Associate Professor of Biomedical Informatics, 2019-2022<br/>
Director, Clinical Informatics, Institute for Genomic Medicine, 2017-2022<br/>
Co-Director, Bioinformatics, Department of Biomedical Informatics, 2017-2022<br/>
Director, Clinical Informatics, Herbert Irving Comprehensive Cancer Center, 2013-2022<br/>
Herbert Irving Assistant Professor of Biomedical Informatics, 2012-2019<br/>
</p>
<p>
<b>Stanford University</b>, Stanford, CA<br/>
Department of Energy Office of Science Graduate Fellow in the Biomedical Informatics Training Program, 2008-2012.<br/>
<em>Doctoral Advisor:</em> Russ Altman, <br/>
<em>Doctoral Committee:</em> Atul Butte, Trevor Hastie, and Phillip Tsao, <br/>
<em>Dissertation Title:</em> "Data-driven Detection, Prediction, and Validation of Drug-Drug Interactions."
</p>
<!--
<p>
<b>Scientific Advisory Board Memberships</b><br/>
YouGene, Inc. (2013-)<br/>
Advera Health, Inc. (2012-)<br/>
</p>
-->
<p>
<b>Professional Society Memberships</b><br/>
American Medical Informatics Association (2011-)<br/>
American Society of Human Genetics (2016-)<br/>
American Society for Clinical Pharmacology and Therapeutics (2016-)<br/>
International Society for Computational Biology (2012-2014)<br/>
American Statistical Association (2013-2014)<br/>
</p>
</div>
<!-- PUBLICATIONS -->
<h2>Peer-Reviewed Journal Publications</h2>
<div class="section printhide">
<a href="https://scholar.google.com/citations?user=ejoWKqsAAAAJ&hl=en">Google Scholar</a>
|
<a href="https://www.ncbi.nlm.nih.gov/myncbi/nicholas.tatonetti.1/bibliography/public/">NCBI bibliography</a>
</div>
<div class="section">
<!-- PASTE PUBS HERE -->
<p><strong><em>2022</em></strong></p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Nicholas Giangreco and Nicholas P Tatonetti</span>
<span class="title">A database of pediatric drug effects to evaluate ontogenic mechanisms from child growth and development</span>
<span class="journal">Med<em>(In Press)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Jiheum Park, Michael G Artin, Kate E Lee, Yoanna S Pumpalova, Myles A Ingram, Benjamin L May, Michael Park, Chin Hur, Nicholas P Tatonetti</span>
<span class="title">Deep learning on time series laboratory test results from electronic health records for early detection of pancreatic cancer</span>
<span class="journal">Journal of Biomedical Informatics<em>(2022)</em> </span>
</p>
<p class="citation">
<span class="authors">Shen, Tian Huai, Stauber, Jacob, Xu, Katherine, Jacunski, Alexandra, Paragas, Neal, Callahan, Miriam, Banlengchit, Run, Levitman, Abraham D, De Oliveira, Beatriz Desanti, Beenken, Andrew</span>
<span class="title">Snapshots of nascent RNA reveal cell-and stimulus-specific responses to acute kidney injury</span>
<span class="journal">JCI insight, <em>(2022)</em> </span>
</p>
<p class="citation">
<span class="authors">Biswas, Saptarshi, Shahriar, Sanjid, Giangreco, Nicholas P, Arvanitis, Panos, Winkler, Markus, <b> Tatonetti, Nicholas P</b>, Brunken, William J, Cutforth, Tyler, Agalliu, Dritan</span>
<span class="title">Mural norrin/β-catenin signaling regulates Lama2 expression to promote neurovascular unit assembly</span>
<span class="journal">bioRxiv, <em>(2022)</em> </span>
</p>
<p class="citation">
<span class="authors">Jiwoon Park, Jonathan Foox, T. Hether, D. Danko, S. Warren, Youngmi Kim, J. Reeves, D. Butler, Christopher Mozsary, J. Rosiene, Alon Shaiber, Evan E. Afshin, M. Mackay, André F. Rendeiro, Y. Bram, Vasuretha Chandar, Heather Geiger, A. Craney, P. Velu, A. Melnick, I. Hajirasouliha, A. Beheshti, Deanne M. Taylor, Amanda M. Saravia-Butler, Urminder Singh, E. Wurtele, J. Schisler, S. Fennessey, A. Corvelo, M. Zody, S. Germer, S. Salvatore, Shawn Levy, Shixiu Wu, <b> N. Tatonetti</b>, S. Shapira, M. Salvatore, L. Westblade, M. Cushing, H. Rennert, A. Kriegel, O. Elemento, M. Imieliński, C. Rice, A. Borczuk, Cem Meydan, R. Schwartz, Christopher E. Mason</span>
<span class="title">System-wide transcriptome damage and tissue identity loss in COVID-19 patients</span>
<span class="journal">Cell Reports Medicine, <em>(2022)</em> </span><span>Vol 3</span> <span>No 2</span> <span>Pp 100522</span>
</p>
<p><strong><em>2021</em></strong></p>
<p class="citation">
<span class="authors">Basile, Anna O, Verma, Anurag, Tang, Leigh Anne, Serper, Marina, Scanga, Andrew, Farrell, Ava, Destin, Brittney, Carr, Rotonya M, Anyanwu-Ofili, Anuli, Rajagopal, Gunaretnam</span>
<span class="title">Rapid Identification and Phenotyping of Nonalcoholic Fatty Liver Disease Patients Using an Automated Algorithmic Approach in Diverse, Urban Healthcare Systems</span>
<span class="journal">medRxiv, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">Xiayuan Huang, <b> N. Tatonetti</b>, Katie LaRow, Brooke Delgoffee, J. Mayer, D. Page, S. Hebbring</span>
<span class="title">E-Pedigrees: a large-scale automatic family pedigree prediction application</span>
<span class="journal">Bioinformatics, <em>(2021)</em> </span><span>Vol 37</span> <span>No 21</span> <span>Pp 3966-3968</span>
</p>
<p class="citation">
<span class="authors">N. Giangreco, Sulieman Lina, J. Qian, Aymone Kuoame, V. Subbian, E. Boerwinkle, M. Cicek, Cheryl R. Clark, Elizabeth Cohen, K. Gebo, R. Loperena-Cortes, K. Mayo, S. Mockrin, L. Ohno-Machado, S. Schully, <b> N. Tatonetti</b>, A. Ramirez</span>
<span class="title">Pediatric data from the All of Us research program: demonstration of pediatric obesity over time</span>
<span class="journal">JAMIA Open, <em>(2021)</em> </span><span>Vol 4</span> <span>No 4</span> <span>Pp ooab112</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Hao, Yun, Thangaraj, Phyllis, <b> Tatonetti, Nicholas</b></span>
<span class="title">Predicting the Toxicity of Druggable Proteins to Human Tissues</span>
<span class="journal">bioRxiv, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">Theresa A. Koleck, M. Topaz, <b> N. Tatonetti</b>, M. George, C. Miaskowski, A. Smaldone, S. Bakken</span>
<span class="title">Characterizing shared and distinct symptom clusters in common chronic conditions through natural language processing of nursing notes</span>
<span class="journal">Research in Nursing & Health, <em>(2021)</em> </span><span>Vol 44</span> <span>No 6</span> <span>Pp 906-919</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">S. P. Mcgrath, Mary Lauren Benton, Maryam Tavakoli, <b> N. Tatonetti</b></span>
<span class="title">Predictions, Pivots, and a Pandemic: a Review of 2020's Top Translational Bioinformatics Publications</span>
<span class="journal">Yearbook of Medical Informatics, <em>(2021)</em> </span><span>Vol 30</span> <span>No 01</span> <span>Pp 219-225</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Giangreco, <b> N. Tatonetti</b></span>
<span class="title">A database of pediatric drug effects to evaluate ontogenic mechanisms from child growth and development</span>
<span class="journal">Available at SSRN 3898786, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">N. Giangreco, G. Lebreton, S. Restaino, Mary Jane Farr, E. Zorn, P. Colombo, J. Patel, R. Levine, L. Truby, R. Soni, P. Leprince, J. Kobashigawa, <b> N. Tatonetti</b>, B. Fine</span>
<span class="title">Plasma kallikrein predicts primary graft dysfunction after heart transplant</span>
<span class="journal">The Journal of Heart and Lung Transplantation, <em>(2021)</em> </span><span>Vol 40</span> <span>No 10</span> <span>Pp 1199-1211</span>
</p>
<p class="citation">
<span class="authors">Kipp W. Johnson, J. Narula, B. Glicksberg, K. Shameer, F. Chaudhry, A. Yahi, Nayaab S. Khan, L. Amadori, C. Krittanawong, B. Readhead, Ross Hagan, C. Becker, F. Chaudhry, Aparna A. Divaraniya, Milo R. Smith, U. Baber, Li Li, Benjamin D McCauley, G. Nadkarni, K. Pak, B. Gray, Deepak A Kaji, B. Percha, Y. Vengrenyuk, Javed Suleman, <b> N. Tatonetti</b>, A. Butte, A. Petrov, E. Arbustini, C. Giannarelli, N. Narula, W. Strauss, J. Dudley, A. Kini</span>
<span class="title">Repurposing the atypical antidepressant trazodone for atherosclerotic cardiovascular disease</span>
<span class="journal">, <em>(2021)</em> </span>
</p>
<span class="author_icon">FA</span>
<p class="citation">
<span class="authors"><b>N. Tatonetti</b>, N. Elhadad</span>
<span class="title">Fine-scale genetic ancestry as a potential new tool for precision medicine</span>
<span class="journal">Nature Medicine, <em>(2021)</em> </span><span>Vol 27</span> <span>No 7</span> <span>Pp 1152-1153</span>
</p>
<span class="author_icon">FA</span>
<p class="citation">
<span class="authors"><b>Tatonetti, Nicholas</b>, Hao, Yun</span>
<span class="title">Methods and systems for predicting success rates of clinical trials</span>
<span class="journal">, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">Wattacheril, J, Basile, AO, Verma, A, Tang, LA, Serper, M, Scanga, A, Farrell, A, Destin, BM, Carr, RM, Anyanwu-Ofili, A</span>
<span class="title">Rapid Identification and Phenotyping of Nonalcoholic Fatty Liver Disease Patients Using an Automated Algorithmic Approach in Diverse, Urban Healthcare Systems</span>
<span class="journal">, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">N. Shang, Atlas Khan, Fernanda C G Polubriaginof, F. Zanoni, Karla Mehl, D. Fasel, P. Drawz, R. J. Carrol, J. Denny, M. Hathcock, A. Arruda-Olson, P. Peissig, R. Dart, M. Brilliant, E. Larson, D. Carrell, S. Pendergrass, S. Verma, M. Ritchie, B. Benoit, V. Gainer, E. Karlson, A. Gordon, G. Jarvik, I. Stanaway, D. Crosslin, S. Mohan, I. Ionita-Laza, <b> N. Tatonetti</b>, A. Gharavi, G. Hripcsak, C. Weng, K. Kiryluk</span>
<span class="title">Medical records-based chronic kidney disease phenotype for clinical care and “big data” observational and genetic studies</span>
<span class="journal">NPJ digital medicine, <em>(2021)</em> </span><span>Vol 4</span> <span>No 1</span> <span>Pp 1-13</span>
</p>
<p class="citation">
<span class="authors">D. Butler, Christopher Mozsary, Cem Meydan, Jonathan Foox, J. Rosiene, Alon Shaiber, D. Danko, Ebrahim Afshinnekoo, M. Mackay, F. Sedlazeck, N. A. Ivanov, M. Sierra, D. Pohle, M. Zietz, U. Gisladottir, V. Ramlall, Evan T Sholle, E. Schenck, Craig D. Westover, Ciaran Hassan, Krista A. Ryon, B. Young, Chandrima Bhattacharya, Dianna L. Ng, A. Granados, Yale A Santos, V. Servellita, S. Federman, P. Ruggiero, Arkarachai Fungtammasan, Chen-Shan Chin, N. M. Pearson, B. Langhorst, N. Tanner, Youngmi Kim, J. Reeves, T. Hether, S. Warren, M. Bailey, Justyna Gawrys, D. Meleshko, Dong-Li Xu, M. Couto-Rodriguez, D. Nagy‐Szakal, J. Barrows, H. Wells, N. O’Hara, J. Rosenfeld, Ying Chen, P. Steel</span>
<span class="title">Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions</span>
<span class="journal">Nature communications, <em>(2021)</em> </span><span>Vol 12</span> <span>No 1</span> <span>Pp 1-17</span>
</p>
<p class="citation">
<span class="authors">P. Kennel, A. Yahi, Y. Naka, D. Mancini, C. Marboe, K. Max, K. Akat, T. Tuschl, E. Vasilescu, E. Zorn, <b> N. Tatonetti</b>, P. Schulze</span>
<span class="title">Longitudinal profiling of circulating miRNA during cardiac allograft rejection: a proof‐of‐concept study</span>
<span class="journal">ESC heart failure, <em>(2021)</em> </span><span>Vol 8</span> <span>No 3</span> <span>Pp 1840-1849</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Giangreco, <b> N. Tatonetti</b></span>
<span class="title">Evaluating risk detection methods to uncover ontogenic-mediated adverse drug effect mechanisms in children</span>
<span class="journal">BioData mining, <em>(2021)</em> </span><span>Vol 14</span> <span>No 1</span> <span>Pp 1-17</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Catherine Kim, <b> N. Tatonetti</b></span>
<span class="title">Prediction of adverse drug reactions associated with drug-drug interactions using hierarchical classification</span>
<span class="journal">bioRxiv, <em>(2021)</em> </span>
</p>
<p class="citation">
<span class="authors">E. Spurlin, E. Han, E. Silver, B. May, <b> N. Tatonetti</b>, Myles A Ingram, Zhezhen Jin, C. Hur, A. Advincula, H. Hur</span>
<span class="title">Where have all the emergencies gone? The impact of the COVID-19 pandemic on obstetric and gynecologic procedures and consults at a New York City hospital</span>
<span class="journal">Journal of minimally invasive gynecology, <em>(2021)</em> </span><span>Vol 28</span> <span>No 7</span> <span>Pp 1411-1419. e1</span>
</p>
<p class="citation">
<span class="authors">Theresa A. Koleck, <b> N. Tatonetti</b>, S. Bakken, S. Mitha, Morgan Henderson, M. George, C. Miaskowski, A. Smaldone, M. Topaz</span>
<span class="title">Identifying symptom information in clinical notes using natural language processing</span>
<span class="journal">Nursing research, <em>(2021)</em> </span><span>Vol 70</span> <span>No 3</span> <span>Pp 173-183</span>
</p>
<p><strong><em>2020</em></strong></p>
<p class="citation">
<span class="authors">P. Washington, S. Yeung, B. Percha, <b> N. Tatonetti</b>, Jan Liphardt, D. Wall</span>
<span class="title">Achieving trustworthy biomedical data solutions</span>
<span class="journal">BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, <em>(2020)</em> </span><span>Pp 1-13</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">E. Silver, Han Q Truong, S. Ostvar, C. Hur, <b> N. Tatonetti</b></span>
<span class="title">Association of neighborhood deprivation index with success in cancer care crowdfunding</span>
<span class="journal">JAMA network open, <em>(2020)</em> </span><span>Vol 3</span> <span>No 12</span> <span>Pp e2026946-e2026946</span>
</p>
<p class="citation">
<span class="authors">E. Spurlin, E. Han, E. Silver, B. May, <b> N. Tatonetti</b>, C. Hur, A. Advincula, H. Hur</span>
<span class="title">The Impact of the COVID-19 Pandemic on Obstetric and Gynecologic Procedures and Consults at a Metropolitan Hospital in the Epicenter</span>
<span class="journal">Journal of Minimally Invasive Gynecology, <em>(2020)</em> </span><span>Vol 27</span> <span>No 7</span> <span>Pp S108-S109</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Zietz, J. Zucker, <b> N. Tatonetti</b></span>
<span class="title">Associations between blood type and COVID-19 infection, intubation, and death</span>
<span class="journal">Nature communications, <em>(2020)</em> </span><span>Vol 11</span> <span>No 1</span> <span>Pp 1-6</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Ostvar, Sassan, Truong, Han, Silver, Elisabeth R, Lightdale, Charles J, Hur, Chin, <b> Tatonetti, Nicholas P</b></span>
<span class="title">Transfer learning from simulations improves the classification of OCT images of glandular epithelia</span>
<span class="journal">bioRxiv, <em>(2020)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">V. Ramlall, J. Zucker, <b> N. Tatonetti</b></span>
<span class="title">Melatonin is significantly associated with survival of intubated COVID-19 patients</span>
<span class="journal">MedRxiv, <em>(2020)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Giangreco, Jonathan E Elias, <b> N. Tatonetti</b></span>
<span class="title">No population left behind: Improving paediatric drug safety using informatics and systems biology</span>
<span class="journal">British Journal of Clinical Pharmacology, <em>(2020)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Payal Chandak, <b> N. Tatonetti</b></span>
<span class="title">Using machine learning to identify adverse drug effects posing increased risk to women</span>
<span class="journal">Patterns, <em>(2020)</em> </span><span>Vol 1</span> <span>No 7</span> <span>Pp 100108</span>
</p>
<p class="citation">
<span class="authors">V. Ramlall, Phyllis M. Thangaraj, Cem Meydan, Jonathan Foox, D. Butler, Jacob Kim, B. May, J. D. De Freitas, B. Glicksberg, C. Mason, <b> N. Tatonetti</b>, S. Shapira</span>
<span class="title">Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection</span>
<span class="journal">Nature medicine, <em>(2020)</em> </span><span>Vol 26</span> <span>No 10</span> <span>Pp 1609-1615</span>
</p>
<p class="citation">
<span class="authors">A. Yahi, Paul J. Hoffman, Margot Brandt, P. Mohammadi, <b> N. Tatonetti</b>, T. Lappalainen</span>
<span class="title">EdiTyper: a high-throughput tool for analysis of targeted sequencing data from genome editing experiments</span>
<span class="journal">bioRxiv, <em>(2020)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">A. Yahi, <b> N. Tatonetti</b></span>
<span class="title">Simulating drug effects on blood glucose laboratory test time series with a conditional WGAN</span>
<span class="journal">medRxiv, <em>(2020)</em> </span>
</p>
<p class="citation">
<span class="authors">T. Kapoor, Pooja Mahadeshwar, J. Hui-Yuen, Kayla Quinnies, <b> N. Tatonetti</b>, Y. Gartshteyn, C. Guo, L. Geraldino-Pardilla, A. Askanase</span>
<span class="title">Prevalence of progressive multifocal leukoencephalopathy (PML) in adults and children with systemic lupus erythematosus</span>
<span class="journal">Lupus science & medicine, <em>(2020)</em> </span><span>Vol 7</span> <span>No 1</span> <span>Pp e000388</span>
</p>
<p class="citation">
<span class="authors">N. Macesic, Oliver J Bear Don't Walk, I. Pe’er, <b> N. Tatonetti</b>, A. Peleg, A. Uhlemann</span>
<span class="title">Predicting phenotypic polymyxin resistance in Klebsiella pneumoniae through machine learning analysis of genomic data</span>
<span class="journal">Msystems, <em>(2020)</em> </span><span>Vol 5</span> <span>No 3</span> <span>Pp e00656-19</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Phyllis M. Thangaraj, U. Gisladottir, <b> N. Tatonetti</b></span>
<span class="title">Medical data and machine learning improve power of stroke genome-wide association studies</span>
<span class="journal">bioRxiv, <em>(2020)</em> </span>
</p>
<p><strong><em>2019</em></strong></p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Liu, Zhigang, Wang, Yifan, Huang, Yuhui, Kim, Betty YS, Shan, Hong, Wu, Depei, Jiang, Wen, Basile, Anna O, Yahi, Alexandre, <b> Tatonetti, Nicholas P</b></span>
<span class="title">608 Max-imizing the Attenuation of Myc Using Small Molecules</span>
<span class="journal">Science & Society, <em>(2019)</em> </span><span>Vol 40</span> <span>No 9</span> <span>Pp 605-710</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, <b> N. Tatonetti</b></span>
<span class="title">Attention deficit-hyperactivity disorder and month of school enrollment</span>
<span class="journal">The New England journal of medicine, <em>(2019)</em> </span><span>Vol 380</span> <span>No 7</span> <span>Pp 692-693</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Brenner, Steven E, Bulyk, Martha L, Crawford, Dana C, Morgan, Alexander A, Radivojac, Predrag, <b> Tatonetti, Nicholas P</b></span>
<span class="title">Precision Medicine: Addressing the Challenges of Sharing, Analysis, and Privacy at Scale</span>
<span class="journal">PACIFIC SYMPOSIUM ON BIOCOMPUTING 2020, <em>(2019)</em> </span><span>Pp 547-550</span>
</p>
<p class="citation">
<span class="authors">Zimmerman, Noah, <b> Tatonetti, Nicholas P</b>, Dudley, Joel T</span>
<span class="title">AMarketplace FOR HEALTH: OPPORTUNITIES AND CHALLENGES FOR BIOMEDICAL BLOCKCHAINS</span>
<span class="journal">, <em>(2019)</em> </span>
</p>
<p class="citation">
<span class="authors">Basile, Anna, Anyanwu-Ofili, Anuli, Rajagopal, Gunaretnam, Farrell, Ava, Destin, Brittney, Krikhely, Abraham, Bessler, Marc, <b> Tatonetti, Nicholas</b>, Wattacheril, Julia J</span>
<span class="title">ELECTRONIC HEALTH RECORD PHENOTYPING ALGORITHM IDENTIFIES PATIENTS WITH ADVANCED FIBROSIS IN A LARGE COHORT WITH NONALCOHOLIC FATTY LIVER DISEASE</span>
<span class="journal">HEPATOLOGY, <em>(2019)</em> </span><span>Vol 70</span> <span>Pp 1137A-1137A</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">V. Ramlall, Kayla Quinnies, R. Vanguri, T. Lorberbaum, David Goldstein, <b> N. Tatonetti</b></span>
<span class="title">Predicting the genetic ancestry of 2.6 million New York City patients using clinical data</span>
<span class="journal">bioRxiv, <em>(2019)</em> </span><span>Pp 768440</span>
</p>
<p class="citation">
<span class="authors">Olga Lyudovyk, Yufeng Shen, <b> N. Tatonetti</b>, S. Hsiao, M. Mansukhani, C. Weng</span>
<span class="title">Pathway analysis of genomic pathology tests for prognostic cancer subtyping</span>
<span class="journal">Journal of biomedical informatics, <em>(2019)</em> </span><span>Vol 98</span> <span>Pp 103286</span>
</p>
<p class="citation">
<span class="authors">Beatriz Desanti De Oliveira, Katherine Xu, T. Shen, M. Callahan, K. Kiryluk, V. D’Agati, <b> N. Tatonetti</b>, J. Barasch, P. Devarajan</span>
<span class="title">Molecular nephrology: types of acute tubular injury</span>
<span class="journal">Nature Reviews Nephrology, <em>(2019)</em> </span><span>Vol 15</span> <span>No 10</span> <span>Pp 599-612</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Zhouzerui Liu, <b> N. Tatonetti</b></span>
<span class="title">Familial relationships in electronic health records (EHR) v2</span>
<span class="journal">bioRxiv, <em>(2019)</em> </span><span>Pp 731976</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">A. Basile, A. Yahi, <b> N. Tatonetti</b></span>
<span class="title">Artificial intelligence for drug toxicity and safety</span>
<span class="journal">Trends in pharmacological sciences, <em>(2019)</em> </span><span>Vol 40</span> <span>No 9</span> <span>Pp 624-635</span>
</p>
<p class="citation">
<span class="authors">Fernanda C G Polubriaginof, P. Ryan, H. Salmasian, Andrea W. Shapiro, A. Perotte, M. Safford, G. Hripcsak, Shaun Smith, <b> N. Tatonetti</b>, D. Vawdrey</span>
<span class="title">Challenges with quality of race and ethnicity data in observational databases</span>
<span class="journal">Journal of the American Medical Informatics Association, <em>(2019)</em> </span><span>Vol 26</span> <span>No 8-9</span> <span>Pp 730-736</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Joseph D. Romano, Hai Li, Ronald B. Realubit, Charles Karan, <b> N. Tatonetti</b></span>
<span class="title">Discovering therapeutic activities from venoms using differential gene expression</span>
<span class="journal">bioRxiv, <em>(2019)</em> </span><span>Pp 699280</span>
</p>
<p class="citation">
<span class="authors">B. Glicksberg, B. Oskotsky, Phyllis M. Thangaraj, N. Giangreco, M. Badgeley, Kipp W. Johnson, Debajyoti Datta, V. Rudrapatna, N. Rappoport, Mark Shervey, R. Miotto, T. Goldstein, Eugenia Rutenberg, Remi Frazier, Nelson Lee, Sharat Israni, Rick Larsen, B. Percha, Li Li, J. Dudley, <b> N. Tatonetti</b>, A. Butte</span>
<span class="title">PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model</span>
<span class="journal">Bioinformatics, <em>(2019)</em> </span><span>Vol 35</span> <span>No 21</span> <span>Pp 4515-4518</span>
</p>
<p class="citation">
<span class="authors">S. Ahalt, C. Chute, K. Fecho, Gustavo Glusman, J. Hadlock, Casey Overby Taylor, E. Pfaff, P. Robinson, H. Solbrig, C. Ta, <b> N. Tatonetti</b>, C. Weng</span>
<span class="title">Clinical data: sources and types, regulatory constraints, applications</span>
<span class="journal">Clinical and translational science, <em>(2019)</em> </span><span>Vol 12</span> <span>No 4</span> <span>Pp 329</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Giangreco, Nicholas P, Fine, Barry, <b> Tatonetti, Nicholas P</b></span>
<span class="title">cohorts: A Python package for clinical ‘omics data management</span>
<span class="journal">bioRxiv, <em>(2019)</em> </span><span>Pp 626051</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Joseph D. Romano, <b> N. Tatonetti</b></span>
<span class="title">Informatics and computational methods in natural product drug discovery: a review and perspectives</span>
<span class="journal">Frontiers in genetics, <em>(2019)</em> </span><span>Vol 10</span> <span>Pp 368</span>
</p>
<p class="citation">
<span class="authors">Krigel, Anna, <b> Tatonetti, Nicholas</b>, Neugut, Alfred I, Lebwohl, Benjamin</span>
<span class="title">Mo1634–No Increased Risk of Colorectal Adenomas in Spouses of Patients with Colorectal Neoplasia</span>
<span class="journal">Gastroenterology, <em>(2019)</em> </span><span>Vol 156</span> <span>No 6</span> <span>Pp S-810</span>
</p>
<p class="citation">
<span class="authors">N. Giangreco, G. Lebreton, S. Restaino, M. Farr, P. Colombo, E. Zorn, <b> N. Tatonetti</b>, P. Leprince, J. Kobashigawa, B. Fine</span>
<span class="title">Exosome Proteomics and Machine Learning Identify Novel Biomarkers of Primary Graft Dysfunction</span>
<span class="journal">The Journal of Heart and Lung Transplantation, <em>(2019)</em> </span><span>Vol 38</span> <span>No 4</span> <span>Pp S137</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Phyllis M. Thangaraj, Benjamin R. Kummer, T. Lorberbaum, Mitchell S. V. Elkind, <b> N. Tatonetti</b></span>
<span class="title">Comparative analysis of EHR-based stroke phenotyping methods, their applications, and interpretation</span>
<span class="journal">bioRxiv, <em>(2019)</em> </span><span>Pp 565671</span>
</p>
<p class="citation">
<span class="authors">B. Glicksberg, B. Oskotsky, N. Giangreco, Phyllis M. Thangaraj, V. Rudrapatna, Debajyoti Datta, Remi Frazier, Nelson Lee, Rick Larsen, <b> N. Tatonetti</b>, A. Butte</span>
<span class="title">ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data</span>
<span class="journal">JAMIA open, <em>(2019)</em> </span><span>Vol 2</span> <span>No 1</span> <span>Pp 10-14</span>
</p>
<p class="citation">
<span class="authors">A. Faye, Fernanda C G Polubriaginof, P. Green, D. Vawdrey, <b> N. Tatonetti</b>, B. Lebwohl</span>
<span class="title">Low rates of screening for celiac disease among family members</span>
<span class="journal">Clinical Gastroenterology and Hepatology, <em>(2019)</em> </span><span>Vol 17</span> <span>No 3</span> <span>Pp 463-468</span>
</p>
<span class="author_icon">FA</span>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors"><b>N. Tatonetti</b></span>
<span class="title">Translational medicine in the Age of Big Data</span>
<span class="journal">Briefings in bioinformatics, <em>(2019)</em> </span><span>Vol 20</span> <span>No 2</span> <span>Pp 457-462</span>
</p>
<span class="author_icon">FA</span>
<p class="citation">
<span class="authors"><b>Tatonetti, Nicholas</b>, Altman, Russ B, Fernald, Guy Haskin</span>
<span class="title">Signal detection algorithms to identify drug effects and drug interactions</span>
<span class="journal">, <em>(2019)</em> </span>
</p>
<p><strong><em>2018</em></strong></p>
<p class="citation">
<span class="authors">Castillero, Estibaliz, Ali, Ziad A, Akashi, Hirokazu, Giangreco, Nicholas, Wang, Catherine, Stöhr, Eric J, Ji, Ruping, Zhang, Xiaokan, Kheysin, Nathaniel, Park, Joo-Eun S</span>
<span class="title">Muscle Mechanics and Ventricular Function: Structural and functional cardiac profile after prolonged duration of mechanical unloading: potential implications for myocardial recovery</span>
<span class="journal">American Journal of Physiology-Heart and Circulatory Physiology, <em>(2018)</em> </span><span>Vol 315</span> <span>No 5</span> <span>Pp H1463</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Giangreco, <b> N. Tatonetti</b></span>
<span class="title">Using precision pharmacovigilance to detect and evaluate antiepileptic drug associated adverse reactions in pediatric patients</span>
<span class="journal">F1000Research, <em>(2018)</em> </span><span>Vol 7</span>
</p>
<p class="citation">
<span class="authors">Fernanda C G Polubriaginof, N. Shang, G. Hripcsak, <b> N. Tatonetti</b>, D. Vawdrey</span>
<span class="title">Low screening rates for diabetes mellitus among family members of affected relatives</span>
<span class="journal">AMIA Annual Symposium Proceedings, <em>(2018)</em> </span><span>Vol 2018</span> <span>Pp 1471</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Giangreco, <b> N. Tatonetti</b></span>
<span class="title">Using precision pharmacoviglance to detect developmentally-regulated adverse drug reactions: a case study with antiepileptic drugs</span>
<span class="journal">F1000Research, <em>(2018)</em> </span><span>Vol 7</span>
</p>
<p class="citation">
<span class="authors">N. Giangreco, G. Lebreton, S. Restaino, M. Farr, P. Colombo, E. Zorn, P. Leprince, J. Kobashigawa, <b> N. Tatonetti</b>, B. Fine</span>
<span class="title">Standardized and reproducible analysis enables identification of novel primary graft dysfunction biomarkers using exosome proteomics</span>
<span class="journal">F1000Research, <em>(2018)</em> </span><span>Vol 7</span>
</p>
<p class="citation">
<span class="authors">E. Castillero, Z. Ali, H. Akashi, N. Giangreco, Catherine Wang, E. Stöhr, Ruping Ji, Xiaokan Zhang, Nathaniel Kheysin, Joo-Eun S. Park, Sheetal Hegde, Sanatkumar Patel, Samantha Stein, Carlos Cuenca, Diana Leung, S. Homma, <b> N. Tatonetti</b>, V. Topkara, K. Takeda, P. Colombo, Y. Naka, H. Sweeney, P. Schulze, Isaac J George</span>
<span class="title">Structural and functional cardiac profile after prolonged duration of mechanical unloading: potential implications for myocardial recovery</span>
<span class="journal">American Journal of Physiology-Heart and Circulatory Physiology, <em>(2018)</em> </span><span>Vol 315</span> <span>No 5</span> <span>Pp H1463-H1476</span>
</p>
<p class="citation">
<span class="authors">C. Ta, M. Dumontier, G. Hripcsak, <b> N. Tatonetti</b>, C. Weng</span>
<span class="title">Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records</span>
<span class="journal">Scientific data, <em>(2018)</em> </span><span>Vol 5</span> <span>No 1</span> <span>Pp 1-17</span>
</p>
<p class="citation">
<span class="authors">A. Faye, Fernanda C G Polubriaginof, P. Green, D. Vawdrey, <b> N. Tatonetti</b>, B. Lebwohl</span>
<span class="title">Low Rates of Screening for Celiac Disease Among Family Members</span>
<span class="journal">Clinical Gastroenterology and Hepatology, <em>(2018)</em> </span><span>Pp 1</span>
</p>
<p class="citation">
<span class="authors">K. Shameer, M. Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, B. Glicksberg, Milo R. Smith, B. Readhead, Joseph R. Scarpa, Jebakumar Jebakaran, P. Kovatch, Sabina Lim, W. Goodman, D. Reich, A. Kasarskis, <b> N. Tatonetti</b>, J. Dudley</span>
<span class="title">Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining</span>
<span class="journal">BMC Medical Informatics and Decision Making, <em>(2018)</em> </span><span>Vol 18</span> <span>No 3</span> <span>Pp 1-11</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Yun Hao, <b> N. Tatonetti</b></span>
<span class="title">Predicting negative control drugs to support research in drug safety</span>
<span class="journal">bioRxiv, <em>(2018)</em> </span><span>Pp 380832</span>
</p>
<p class="citation">
<span class="authors">Fabrizio Spagnolo, P. Cristofari, <b> N. Tatonetti</b>, L. Ginzburg, D. Dykhuizen</span>
<span class="title">Pathogen population structure can explain hospital outbreaks</span>
<span class="journal">The ISME journal, <em>(2018)</em> </span><span>Vol 12</span> <span>No 12</span> <span>Pp 2835-2843</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">A. Yahi, T. Lappalainen, P. Mohammadi, <b> N. Tatonetti</b></span>
<span class="title">RecNW: a fast pairwise aligner for targeted sequencing</span>
<span class="journal">bioRxiv, <em>(2018)</em> </span><span>Pp 371989</span>
</p>
<span class="author_icon">FA</span>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors"><b>N. Tatonetti</b></span>
<span class="title">Science as a Culinary Art: How Data Science and Informatics Will Change Knowledge Discovery for Everyone</span>
<span class="journal">Annual Review of Biomedical Data Science, <em>(2018)</em> </span><span>Vol 1</span> <span>Pp iv-vi</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Yun Hao, Kayla Quinnies, Ronald B. Realubit, Charles Karan, <b> N. Tatonetti</b></span>
<span class="title">Tissue‐Specific Analysis of Pharmacological Pathways</span>
<span class="journal">CPT: pharmacometrics & systems pharmacology, <em>(2018)</em> </span><span>Vol 7</span> <span>No 7</span> <span>Pp 453-463</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Fernanda C G Polubriaginof, R. Vanguri, Kayla Quinnies, G. Belbin, A. Yahi, H. Salmasian, T. Lorberbaum, Victor Nwankwo, Li Li, Mark Shervey, P. Glowe, I. Ionita-Laza, M. Simmerling, G. Hripcsak, S. Bakken, David Goldstein, K. Kiryluk, E. Kenny, J. Dudley, D. Vawdrey, <b> N. Tatonetti</b></span>
<span class="title">Disease heritability inferred from familial relationships reported in medical records</span>
<span class="journal">Cell, <em>(2018)</em> </span><span>Vol 173</span> <span>No 7</span> <span>Pp 1692-1704. e11</span>
</p>
<p class="citation">
<span class="authors">Faye, Adam S, Polubriaginof, Fernanda, Green, Peter H, Vawdrey, David K, <b> Tatonetti, Nicholas</b>, Lebwohl, Benjamin</span>
<span class="title">Mo1024-Low Rates of Screening for Celiac Disease Among Family Members; Analysis of Algorithm-Identified Familial Relationships</span>
<span class="journal">Gastroenterology, <em>(2018)</em> </span><span>Vol 154</span> <span>No 6</span> <span>Pp S-674-S-675</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Romano, Joseph D, Nwankwo, Victor, <b> Tatonetti, Nicholas P</b></span>
<span class="title">VenomKB v2. 0: A knowledge repository for computational toxinology</span>
<span class="journal">bioRxiv, <em>(2018)</em> </span><span>Pp 295204</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Boland, M, Polubriaginof, F, <b> Tatonetti, NP</b></span>
<span class="title">A MACHINE LEARNING ALGORITHM TO CLASSIFY FDA CATEGORY C DRUGS.</span>
<span class="journal">CLINICAL PHARMACOLOGY & THERAPEUTICS, <em>(2018)</em> </span><span>Vol 103</span> <span>Pp S10-S10</span>
</p>
<span class="author_icon">FA</span>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors"><b>N. Tatonetti</b></span>
<span class="title">The next generation of drug safety science: coupling detection, corroboration, and validation to discover novel drug effects and drug–drug interactions</span>
<span class="journal">Clinical Pharmacology & Therapeutics, <em>(2018)</em> </span><span>Vol 103</span> <span>No 2</span> <span>Pp 177-179</span>
</p>
<p class="citation">
<span class="authors">P. Kennel, A. Saha, D. Maldonado, R. Givens, D. Brunjes, E. Castillero, Xiaokan Zhang, R. Ji, A. Yahi, Isaac J George, D. Mancini, A. Koller, B. Fine, E. Zorn, P. Colombo, <b> N. Tatonetti</b>, E. Chen, P. Schulze</span>
<span class="title">Serum exosomal protein profiling for the non-invasive detection of cardiac allograft rejection</span>
<span class="journal">The Journal of Heart and Lung Transplantation, <em>(2018)</em> </span><span>Vol 37</span> <span>No 3</span> <span>Pp 409-417</span>
</p>
<p class="citation">
<span class="authors">Boland, Mary Regina, Parhi, Pradipta, Li, Li, Miotto, Riccardo, Carroll, Robert, Iqbal, Usman, Nguyen, Phung-Anh, Schuemie, Martijn, You, Seng Chan, Smith, Donahue</span>
<span class="title">Uncovering exposures responsible for birth season–disease effects: a global study</span>
<span class="journal">Journal of the American Medical Informatics Association, <em>(2018)</em> </span><span>Vol 25</span> <span>No 3</span> <span>Pp 275-288</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Fernanda C G Polubriaginof, R. Vanguri, Kayla Quinnies, G. Belbin, A. Yahi, H. Salmasian, T. Lorberbaum, Victor Nwankwo, Li Li, Mark Shervey, P. Glowe, I. Ionita-Laza, M. Simmerling, G. Hripcsak, S. Bakken, David Goldstein, K. Kiryluk, E. Kenny, J. Dudley, D. Vawdrey, <b> N. Tatonetti</b></span>
<span class="title">Estimate of disease heritability using 7.4 million familial relationships inferred from electronic health records</span>
<span class="journal">, <em>(2018)</em> </span>
</p>
<p><strong><em>2017</em></strong></p>
<p class="citation">
<span class="authors">N. Giangreco, E. Zorn, E. Chen, P. Colombo, <b> N. Tatonetti</b>, B. Fine</span>
<span class="title">Identification of novel primary graft dysfunction biomarkers using exosome proteomics</span>
<span class="journal">Circulation, <em>(2017)</em> </span><span>Vol 136</span> <span>No suppl_1</span> <span>Pp A19311-A19311</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Boland, Mary Regina, Parhi, Pradipta, Gentine, Pierre, <b> Tatonetti, Nicholas P</b></span>
<span class="title">Climate Classification is an Important Factor in Assessing Hospital Performance Metrics</span>
<span class="journal">AGU Fall Meeting Abstracts, <em>(2017)</em> </span><span>Vol 2017</span> <span>Pp IN53A-0079</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">A. Yahi, R. Vanguri, Noémie Elhadad, <b> N. Tatonetti</b></span>
<span class="title">Generative adversarial networks for electronic health records: A framework for exploring and evaluating methods for predicting drug-induced laboratory test trajectories</span>
<span class="journal">arXiv preprint arXiv:1712.00164, <em>(2017)</em> </span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, Fernanda C G Polubriaginof, <b> N. Tatonetti</b></span>
<span class="title">Development of a machine learning algorithm to classify drugs of unknown fetal effect</span>
<span class="journal">Scientific reports, <em>(2017)</em> </span><span>Vol 7</span> <span>No 1</span> <span>Pp 1-15</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">N. Macesic, Fernanda C G Polubriaginof, <b> N. Tatonetti</b></span>
<span class="title">Machine learning: novel bioinformatics approaches for combating antimicrobial resistance</span>
<span class="journal">Current opinion in infectious diseases, <em>(2017)</em> </span><span>Vol 30</span> <span>No 6</span> <span>Pp 511-517</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Robert Moskovitch, Fernanda C G Polubriaginof, A. Weiss, P. Ryan, <b> N. Tatonetti</b></span>
<span class="title">Procedure prediction from symbolic Electronic Health Records via time intervals analytics</span>
<span class="journal">Journal of Biomedical Informatics, <em>(2017)</em> </span><span>Vol 75</span> <span>Pp 70-82</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, Pradipta Parhi, P. Gentine, <b> N. Tatonetti</b></span>
<span class="title">Climate classification is an important factor in assessing quality-of-care across hospitals</span>
<span class="journal">Scientific Reports, <em>(2017)</em> </span><span>Vol 7</span> <span>No 1</span> <span>Pp 1-6</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">T. Lorberbaum, <b> N. Tatonetti</b></span>
<span class="title">Reply: Combination Therapy With Ceftriaxone and Lansoprazole, Acquired Long QT Syndrome and Torsades de Pointes Risk</span>
<span class="journal">Journal of the American College of Cardiology, <em>(2017)</em> </span><span>Vol 69</span> <span>No 14</span> <span>Pp 1877-1878</span>
</p>
<p class="citation">
<span class="authors">R. Boyce, E. Voss, V. Huser, L. Evans, C. Reich, J. Duke, <b> N. Tatonetti</b>, T. Lorberbaum, M. Dumontier, M. Hauben, M. Wallberg, Lili Peng, S. Dempster, Y. He, A. Sena, V. Koutkias, P. Natsiavas, P. Ryan</span>
<span class="title">Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data</span>
<span class="journal">Journal of biomedical semantics, <em>(2017)</em> </span><span>Vol 8</span> <span>Pp 1-15</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, K. Karczewski, <b> N. Tatonetti</b></span>
<span class="title">Ten simple rules to enable multi-site collaborations through data sharing</span>
<span class="journal">PLoS Computational Biology, <em>(2017)</em> </span><span>Vol 13</span> <span>No 1</span> <span>Pp e1005278</span>
</p>
<p class="citation">
<span class="authors">Katherine Xu, P. Rosenstiel, N. Paragas, C. Hinze, Xiaobo Gao, Tian Huai Shen, Max Werth, C. Forster, R. Deng, E. Bruck, R. W. Boles, A. Tornato, Tejashree Gopal, Madison Jones, Justin Konig, J. Stauber, V. D’Agati, H. Erdjument-Bromage, S. Saggi, G. Wagener, K. Schmidt-Ott, <b> N. Tatonetti</b>, P. Tempst, J. A. Oliver, P. Guarnieri, J. Barasch</span>
<span class="title">Unique transcriptional programs identify subtypes of AKI</span>
<span class="journal">Journal of the American Society of Nephrology, <em>(2017)</em> </span><span>Vol 28</span> <span>No 6</span> <span>Pp 1729-1740</span>
</p>
<p class="citation">
<span class="authors">K. Karczewski, <b> N. Tatonetti</b>, A. Manrai, C. Patel, C. Titus Brown, J. Ioannidis</span>
<span class="title">Methods to ensure the reproducibility of biomedical research</span>
<span class="journal">PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017, <em>(2017)</em> </span><span>Pp 117-119</span>
</p>
<p class="citation">
<span class="authors">K. Shameer, Kipp W. Johnson, A. Yahi, R. Miotto, Li Li, D. Ricks, Jebakumar Jebakaran, P. Kovatch, P. Sengupta, A. Gelijns, A. Moskovitz, B. Darrow, D. Reich, A. Kasarskis, <b> N. Tatonetti</b>, D. Pinney, J. Dudley</span>
<span class="title">Predictive modeling of hospital readmission rates using electronic medical record-wide machine learning: a case-study using Mount Sinai heart failure cohort</span>
<span class="journal">Pacific Symposium on Biocomputing 2017, <em>(2017)</em> </span><span>Pp 276-287</span>
</p>
<p class="citation">
<span class="authors">C. Deng, Mark R. Lipstein, L. Scotto, Xavier O Jirau Serrano, M. Mangone, Shirong Li, J. Vendôme, Yun Hao, Xiaomin Xu, S. Deng, Ronald B. Realubit, <b> N. Tatonetti</b>, Charles Karan, S. Lentzsch, D. Fruman, B. Honig, D. Landry, O. O’Connor</span>
<span class="title">Silencing c-Myc translation as a therapeutic strategy through targeting PI3Kδ and CK1ε in hematological malignancies</span>
<span class="journal">Blood, The Journal of the American Society of Hematology, <em>(2017)</em> </span><span>Vol 129</span> <span>No 1</span> <span>Pp 88-99</span>
</p>
<p><strong><em>2016</em></strong></p>
<p class="citation">
<span class="authors">Mahadeshwar, Pooja, Kapoor, Teja, Quinnies, Kayla, <b> Tatonetti, Nicholas</b>, Hui-Yuen, Joyce, Nguyen, Samantha, Bathon, Joan, Neville, Kayla, Miceli, James, Tanner, Stacy</span>
<span class="title">Prevalence of Progressive Multifocal Leukoencephalopathy in Adults and Children with Systemic Lupus Erythematosus</span>
<span class="journal">ARTHRITIS & RHEUMATOLOGY, <em>(2016)</em> </span><span>Vol 68</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, Z. Shahn, D. Madigan, G. Hripcsak, <b> N. Tatonetti</b></span>
<span class="title">Birth Month Affects Lifetime Disease Risk: A Phenome-Wide Method</span>
<span class="journal">HUMAN HEREDITY, <em>(2016)</em> </span><span>Vol 81</span> <span>No 2</span> <span>Pp 52-52</span>
</p>
<p class="citation">
<span class="authors">Johnson, Kipp W, Shameer, Khader, Yahi, Alexandre, Miotto, Riccardo, Ricks, Doran, Jebakaran, Jebakumar, Kovatch, Patricia, Sengupta, Partho, Reich, David L, Kasarskis, Andrew</span>
<span class="title">Pharmacological factors associated with congestive heart failure hospital readmission: a case-study using 15,768 heart failure patients from two health systems</span>
<span class="journal">Circulation, <em>(2016)</em> </span><span>Vol 134</span> <span>No suppl_1</span> <span>Pp A19489-A19489</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">T. Lorberbaum, K. Sampson, Jeremy B. Chang, V. Iyer, R. Woosley, R. Kass, <b> N. Tatonetti</b></span>
<span class="title">Coupling data mining and laboratory experiments to discover drug interactions causing QT prolongation</span>
<span class="journal">Journal of the American College of Cardiology, <em>(2016)</em> </span><span>Vol 68</span> <span>No 16</span> <span>Pp 1756-1764</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Jacunski, Alexandra, <b> Tatonetti, Nicholas</b></span>
<span class="title">Method for identifying synthetic lethality</span>
<span class="journal">, <em>(2016)</em> </span>
</p>
<p class="citation">
<span class="authors">Li Li, M. Boland, R. Miotto, <b> N. Tatonetti</b>, J. Dudley</span>
<span class="title">Replicating cardiovascular condition-birth month associations</span>
<span class="journal">Scientific reports, <em>(2016)</em> </span><span>Vol 6</span> <span>No 1</span> <span>Pp 1-7</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Joseph D. Romano, <b> N. Tatonetti</b></span>
<span class="title">Using a novel ontology to inform the discovery of therapeutic peptides from animal venoms</span>
<span class="journal">AMIA Summits on Translational Science Proceedings, <em>(2016)</em> </span><span>Vol 2016</span> <span>Pp 209</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Yun Hao, <b> N. Tatonetti</b></span>
<span class="title">Predicting G protein-coupled receptor downstream signaling by tissue expression</span>
<span class="journal">Bioinformatics, <em>(2016)</em> </span><span>Vol 32</span> <span>No 22</span> <span>Pp 3435-3443</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Jeremy B. Chang, Kayla Quinnies, Ronald B. Realubit, Charles Karan, J. Rand, <b> N. Tatonetti</b></span>
<span class="title">A novel, rapid method to compare the therapeutic windows of oral anticoagulants using the Hill coefficient</span>
<span class="journal">Scientific Reports, <em>(2016)</em> </span><span>Vol 6</span> <span>No 1</span> <span>Pp 1-5</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">Robert Moskovitch, Hyunmi Choi, G. Hripcsak, <b> N. Tatonetti</b></span>
<span class="title">Prognosis of clinical outcomes with temporal patterns and experiences with one class feature selection</span>
<span class="journal">IEEE/ACM transactions on computational biology and bioinformatics, <em>(2016)</em> </span><span>Vol 14</span> <span>No 3</span> <span>Pp 555-563</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, <b> N. Tatonetti</b></span>
<span class="title">Investigation of 7-dehydrocholesterol reductase pathway to elucidate off-target prenatal effects of pharmaceuticals: a systematic review</span>
<span class="journal">The pharmacogenomics journal, <em>(2016)</em> </span><span>Vol 16</span> <span>No 5</span> <span>Pp 411-429</span>
</p>
<p class="citation">
<span class="authors">Kaitlyn Gayvert, E. Dardenne, C. Cheung, M. Boland, T. Lorberbaum, Jackline Wanjala, Yu Chen, M. Rubin, <b> N. Tatonetti</b>, D. Rickman, O. Elemento</span>
<span class="title">A computational drug repositioning approach for targeting oncogenic transcription factors</span>
<span class="journal">Cell reports, <em>(2016)</em> </span><span>Vol 15</span> <span>No 11</span> <span>Pp 2348-2356</span>
</p>
<p class="citation">
<span class="authors">J. Banda, L. Evans, R. Vanguri, <b> N. Tatonetti</b>, P. Ryan, N. Shah</span>
<span class="title">A curated and standardized adverse drug event resource to accelerate drug safety research</span>
<span class="journal">Scientific data, <em>(2016)</em> </span><span>Vol 3</span> <span>No 1</span> <span>Pp 1-11</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">M. Boland, <b> N. Tatonetti</b></span>
<span class="title">In search of ‘birth month genes’: using existing data repositories to locate genes underlying birth month-disease relationships</span>
<span class="journal">AMIA Summits on Translational Science Proceedings, <em>(2016)</em> </span><span>Vol 2016</span> <span>Pp 189</span>
</p>
<p class="citation">
<span class="authors">N. Nissim, M. Boland, <b> N. Tatonetti</b>, Y. Elovici, G. Hripcsak, Yuval Shahar, Robert Moskovitch</span>
<span class="title">Improving condition severity classification with an efficient active learning based framework</span>
<span class="journal">Journal of biomedical informatics, <em>(2016)</em> </span><span>Vol 61</span> <span>Pp 44-54</span>
</p>
<p class="citation">
<span class="authors">Keith B. Hoffman, M. Dimbil, <b> N. Tatonetti</b>, Robert F Kyle</span>
<span class="title">A pharmacovigilance signaling system based on FDA regulatory action and post-marketing adverse event reports</span>
<span class="journal">Drug safety, <em>(2016)</em> </span><span>Vol 39</span> <span>No 6</span> <span>Pp 561-575</span>
</p>
<span class="author_icon">LA</span>
<p class="citation">
<span class="authors">T. Lorberbaum, K. Sampson, R. Woosley, R. Kass, <b> N. Tatonetti</b></span>
<span class="title">An integrative data science pipeline to identify novel drug interactions that prolong the QT interval</span>
<span class="journal">Drug safety, <em>(2016)</em> </span><span>Vol 39</span> <span>No 5</span> <span>Pp 433-441</span>
</p>
<p class="citation">
<span class="authors">A. Manrai, C. Patel, N. Gehlenborg, <b> N. Tatonetti</b>, J. Ioannidis, I. Kohane</span>
<span class="title">Methods to enhance the reproducibility of precision medicine</span>
<span class="journal">Biocomputing 2016: Proceedings of the Pacific Symposium, <em>(2016)</em> </span><span>Pp 180-182</span>
</p>
<p class="citation">
<span class="authors">B. Kidd, A. Wróblewska, M. Boland, J. Agudo, M. Merad, <b> N. Tatonetti</b>, B. Brown, J. Dudley</span>
<span class="title">Mapping the effects of drugs on the immune system</span>
<span class="journal">Nature biotechnology, <em>(2016)</em> </span><span>Vol 34</span> <span>No 1</span> <span>Pp 47-54</span>
</p>