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Commits on Nov 2, 2013

• added prokka instructions and fix some bowtie

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Commits on Nov 1, 2013

• Merge branch 'master' of https://github.com/ged-lab/2012-paper-diginorm

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• update pythonpath

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• updated nb; pipeline notes

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  de00dd2

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• pipe notes update 2

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  69943d2

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• pipe notes update

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Commits on Oct 28, 2013

• make .txt into .rst

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• more updates for revision

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Commits on Oct 22, 2013

• updated to complete kak assembles; added gitignore

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Commits on Oct 21, 2013

• Merge branch 'master' of https://github.com/ged-lab/2012-paper-diginorm into update

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Commits on Oct 16, 2013

• changes for revisions

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Commits on Sep 12, 2013

• Merge pull request #2 from ged-lab/update

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• updated Makefile for current version of khmer

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Commits on May 22, 2012

• Updated Makefile to produce full set of files for new notebook.

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Commits on May 21, 2012

• minor update to deal properly with more complex sequence names

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• Merge branch 'master' of github.com:ged-lab/2012-paper-diginorm

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  1fa28c4

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• updates to URLs

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  ab3fb0a

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• Merge https://github.com/ged-lab/2012-paper-diginorm

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• update to include staph/sar genomes

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Commits on May 20, 2012

• added README

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Commits on May 19, 2012

• changes for plos

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Commits on May 1, 2012

• submit

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  c3bb759

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• more removals

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  9680a7a

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• updated diginorm

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  2de12cf

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• lotsa updates

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  e7e1ecc

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Commits on Apr 28, 2012

• updated references, etc

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  36e145a

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• many changes

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  69d821d

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Commits on Apr 7, 2012

• minor mods

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  c70873b

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Commits on Mar 29, 2012

• Merge branch 'master' into pnas

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• latest

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Commits on Mar 25, 2012

• Merge branch 'master' into pnas

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  e162e19

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• pnas compile update

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  df5a72c

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• fixed make-biased-reads to not use pygr

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• made copydata target

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• fixed path to script

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