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parallel-netcdf_error.json
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[
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-7hdhb4uxr6gssluuv33662pub4vm4vbm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "27u7qcgajh43jc7awko5hzuri5jnj6yd"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-opqu5rypvlp4xvhqsbxkttfacufsidpm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "3ixcwqfs73x2zgyejpress3igwi7zjtr"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-c6cy6yypsbbhbmxbie2rywlzlc2v3sao/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "5omjsr4smsz536qwlgyfmit5isaxkhpw"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 272,
"repeat_count": 0,
"start": 266,
"end": 279,
"text": ">> 809 configure: error: 'mxm/api/mxm_api.h or libmxm library not found. D",
"pre_context": " 803 checking for knem_io.h... no\n 804 configure: RUNNING CONFIGURE FOR ch3:nemesis:mxm\n 805 checking mxm/api/mxm_api.h usability... no\n 806 checking mxm/api/mxm_api.h presence... no\n 807 checking for mxm/api/mxm_api.h... no\n 808 checking for mxm_get_version in -lmxm... no",
"post_context": " id you specify --with-mxm= or --with-mxm-include= or --with-mxm-lib\n =?'\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-mpich-3.1.4-hhpzie7xda5zkaehetum3jkpglwqqya2/spack-build-out.txt\n",
"hash": "6ioa7dckwvjcujbtbdktlzxm5xqjyd4l"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-icgn7gtqgqnfjv7aoqowgzdhh7al7qsm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "7kwtek32jmjhwfkgqempz5564vspgter"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-7hdhb4uxr6gssluuv33662pub4vm4vbm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "aposjjjh6fjcqqmcayovahku4z4kwwmv"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-c6cy6yypsbbhbmxbie2rywlzlc2v3sao/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "erps2ddi7lv6rcm3plcrythpxt4y6wzd"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-7hdhb4uxr6gssluuv33662pub4vm4vbm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "o2xjkvial5ndg7q7dqfyb5hr7ts7xe4v"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 519,
"repeat_count": 0,
"start": 513,
"end": 526,
"text": ">> 840 collect2: error: ld returned 1 exit status",
"pre_context": " >> 838 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-re\n dhat-linux/9/ld: ../../../src/libs/.libs/libpnetcdf.so: undefined r\n eference to `_gfortran_string_trim'\n >> 839 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-re\n dhat-linux/9/ld: ../../../src/libs/.libs/libpnetcdf.so: undefined r\n eference to `_gfortran_string_len_trim'",
"post_context": " >> 841 make[3]: *** [ncmpigen] Error 1\n 842 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils/ncmpigen'\n >> 843 make[2]: *** [all-recursive] Error 1\n 844 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p",
"hash": "pbbdy777whi6ekxcemc4akpiwwor77gp"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 520,
"repeat_count": 0,
"start": 514,
"end": 527,
"text": ">> 841 make[3]: *** [ncmpigen] Error 1",
"pre_context": " dhat-linux/9/ld: ../../../src/libs/.libs/libpnetcdf.so: undefined r\n eference to `_gfortran_string_trim'\n >> 839 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-re\n dhat-linux/9/ld: ../../../src/libs/.libs/libpnetcdf.so: undefined r\n eference to `_gfortran_string_len_trim'\n >> 840 collect2: error: ld returned 1 exit status",
"post_context": " 842 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils/ncmpigen'\n >> 843 make[2]: *** [all-recursive] Error 1\n 844 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src",
"hash": "pbbdy777whi6ekxcemc4akpiwwor77gp"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 524,
"repeat_count": 0,
"start": 518,
"end": 531,
"text": ">> 843 make[2]: *** [all-recursive] Error 1",
"pre_context": " eference to `_gfortran_string_len_trim'\n >> 840 collect2: error: ld returned 1 exit status\n >> 841 make[3]: *** [ncmpigen] Error 1\n 842 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils/ncmpigen'",
"post_context": " 844 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils'\n >> 845 make[1]: *** [all-recursive] Error 1\n 846 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src",
"hash": "pbbdy777whi6ekxcemc4akpiwwor77gp"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 528,
"repeat_count": 0,
"start": 522,
"end": 535,
"text": ">> 845 make[1]: *** [all-recursive] Error 1",
"pre_context": " arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils/ncmpigen'\n >> 843 make[2]: *** [all-recursive] Error 1\n 844 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils'",
"post_context": " 846 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n '\n >> 847 make: *** [all-recursive] Error 1\n\nSee build log for details:",
"hash": "pbbdy777whi6ekxcemc4akpiwwor77gp"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 532,
"repeat_count": 0,
"start": 526,
"end": 539,
"text": ">> 847 make: *** [all-recursive] Error 1",
"pre_context": " arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n /utils'\n >> 845 make[1]: *** [all-recursive] Error 1\n 846 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage-p\n arallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-src/src\n '",
"post_context": "\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-parallel-netcdf-1.9.0-epwt7mfzpl5ua5jhem55iku6tahzkznu/spack-build-out.txt\n\nTraceback (most recent call last):\n File \"/p/vast1/koparasy/BUILD/head/spack/lib/spack/spack/build_environment.py\", line 1035, in _setup_pkg_and_run",
"hash": "pbbdy777whi6ekxcemc4akpiwwor77gp"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-icgn7gtqgqnfjv7aoqowgzdhh7al7qsm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "t6frdzqgvhinkob5irg7pj2uqlcjeavn"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 273,
"repeat_count": 0,
"start": 267,
"end": 280,
"text": ">> 809 configure: error: 'mxm/api/mxm_api.h or libmxm library not found. D",
"pre_context": " 803 checking for knem_io.h... no\n 804 configure: RUNNING CONFIGURE FOR ch3:nemesis:mxm\n 805 checking mxm/api/mxm_api.h usability... no\n 806 checking mxm/api/mxm_api.h presence... no\n 807 checking for mxm/api/mxm_api.h... no\n 808 checking for mxm_get_version in -lmxm... no",
"post_context": " id you specify --with-mxm= or --with-mxm-include= or --with-mxm-lib\n =?'\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-mpich-3.1.4-i3wlze7nmprsxlgsc3qwkhlih23qffep/spack-build-out.txt\n",
"hash": "tdmaeh7wzl32c46b3mnpuxlodbj7tmg6"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 303,
"repeat_count": 0,
"start": 297,
"end": 310,
"text": ">> 19 configure: error: The installed version of autoconf does not work.",
"pre_context": " 13 checking for perl... /usr/bin/perl\n 14 checking for tex... tex\n 15 checking for yacc... yacc\n 16 checking for lex... lex\n 17 checking whether autoconf is installed... yes\n 18 checking whether autoconf works... no",
"post_context": " 20 Please check config.log for error messages before this one.\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-automake-1.16.3-icgn7gtqgqnfjv7aoqowgzdhh7al7qsm/spack-build-out.txt\n\nTraceback (most recent call last):",
"hash": "zyaf7hmaxd6wtum4rz3uea6k3rr5majo"
}
]