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openmpi_error.json
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[
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 855,
"repeat_count": 0,
"start": 849,
"end": 862,
"text": "redhat-linux/9/ld: final link failed: nonrepresentable section on",
"pre_context": " 17118 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-\n redhat-linux/9/ld: mca/topo/treematch/.libs/libmca_topo_treematch\n .a(tm_verbose.o): relocation R_X86_64_32 against `.rodata.str1.1'\n can not be used when making a shared object; recompile with -fPI\n C\n >> 17119 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-",
"post_context": " output\n >> 17120 collect2: error: ld returned 1 exit status\n >> 17121 make[2]: *** [libmpi.la] Error 1\n 17122 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17123 make[1]: *** [all-recursive] Error 1",
"hash": "3tilapypgk6xvkrgetvvuyjt2mnjxduz"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 857,
"repeat_count": 0,
"start": 851,
"end": 864,
"text": ">> 17120 collect2: error: ld returned 1 exit status",
"pre_context": " .a(tm_verbose.o): relocation R_X86_64_32 against `.rodata.str1.1'\n can not be used when making a shared object; recompile with -fPI\n C\n >> 17119 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-\n redhat-linux/9/ld: final link failed: nonrepresentable section on\n output",
"post_context": " >> 17121 make[2]: *** [libmpi.la] Error 1\n 17122 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17123 make[1]: *** [all-recursive] Error 1\n 17124 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'",
"hash": "3tilapypgk6xvkrgetvvuyjt2mnjxduz"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 858,
"repeat_count": 0,
"start": 852,
"end": 865,
"text": ">> 17121 make[2]: *** [libmpi.la] Error 1",
"pre_context": " can not be used when making a shared object; recompile with -fPI\n C\n >> 17119 /usr/tce/packages/gcc/gcc-9.3.1/rh/usr/bin/../libexec/gcc/x86_64-\n redhat-linux/9/ld: final link failed: nonrepresentable section on\n output\n >> 17120 collect2: error: ld returned 1 exit status",
"post_context": " 17122 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17123 make[1]: *** [all-recursive] Error 1\n 17124 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17125 make: *** [all-recursive] Error 1",
"hash": "3tilapypgk6xvkrgetvvuyjt2mnjxduz"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 861,
"repeat_count": 0,
"start": 855,
"end": 868,
"text": ">> 17123 make[1]: *** [all-recursive] Error 1",
"pre_context": " redhat-linux/9/ld: final link failed: nonrepresentable section on\n output\n >> 17120 collect2: error: ld returned 1 exit status\n >> 17121 make[2]: *** [libmpi.la] Error 1\n 17122 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'",
"post_context": " 17124 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17125 make: *** [all-recursive] Error 1\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-build-out.txt",
"hash": "3tilapypgk6xvkrgetvvuyjt2mnjxduz"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 864,
"repeat_count": 0,
"start": 858,
"end": 871,
"text": ">> 17125 make: *** [all-recursive] Error 1",
"pre_context": " >> 17121 make[2]: *** [libmpi.la] Error 1\n 17122 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'\n >> 17123 make[1]: *** [all-recursive] Error 1\n 17124 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-src/ompi'",
"post_context": "\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-master-c5ledhyn6rlsqusljjqnwaty2feeh334/spack-build-out.txt\n\nTraceback (most recent call last):\n File \"/p/vast1/koparasy/BUILD/head/spack/lib/spack/spack/build_environment.py\", line 1035, in _setup_pkg_and_run",
"hash": "3tilapypgk6xvkrgetvvuyjt2mnjxduz"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 610,
"repeat_count": 0,
"start": 604,
"end": 617,
"text": "ktkv7s/etc/openmpi-mca-params.conf': No such file or directory",
"pre_context": " rasy/BUILD/spack_cluster_installer/quartz/openmpi/spack_env_dir/l\n inux-rhel7-broadwell/gcc-9.3.1/openmpi-1.2.4-kvhqocti2rfhee7fvx62\n pg2g57ktkv7s/etc/openmpi-mca-params.conf\n >> 12701 /usr/bin/install: cannot create regular file '/p/vast1/koparasy/B\n UILD/spack_cluster_installer/quartz/openmpi/spack_env_dir/linux-r\n hel7-broadwell/gcc-9.3.1/openmpi-1.2.4-kvhqocti2rfhee7fvx62pg2g57",
"post_context": " >> 12702 make[3]: *** [install-data-local] Error 1\n 12703 make[3]: *** Waiting for unfinished jobs....\n 12704 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'\n >> 12705 make[2]: *** [install-am] Error 2",
"hash": "kvhqocti2rfhee7fvx62pg2g57ktkv7s"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 611,
"repeat_count": 0,
"start": 605,
"end": 618,
"text": ">> 12702 make[3]: *** [install-data-local] Error 1",
"pre_context": " inux-rhel7-broadwell/gcc-9.3.1/openmpi-1.2.4-kvhqocti2rfhee7fvx62\n pg2g57ktkv7s/etc/openmpi-mca-params.conf\n >> 12701 /usr/bin/install: cannot create regular file '/p/vast1/koparasy/B\n UILD/spack_cluster_installer/quartz/openmpi/spack_env_dir/linux-r\n hel7-broadwell/gcc-9.3.1/openmpi-1.2.4-kvhqocti2rfhee7fvx62pg2g57\n ktkv7s/etc/openmpi-mca-params.conf': No such file or directory",
"post_context": " 12703 make[3]: *** Waiting for unfinished jobs....\n 12704 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'\n >> 12705 make[2]: *** [install-am] Error 2\n 12706 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage",
"hash": "kvhqocti2rfhee7fvx62pg2g57ktkv7s"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 616,
"repeat_count": 0,
"start": 610,
"end": 623,
"text": ">> 12705 make[2]: *** [install-am] Error 2",
"pre_context": " ktkv7s/etc/openmpi-mca-params.conf': No such file or directory\n >> 12702 make[3]: *** [install-data-local] Error 1\n 12703 make[3]: *** Waiting for unfinished jobs....\n 12704 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'",
"post_context": " 12706 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'\n >> 12707 make[1]: *** [install-recursive] Error 1\n 12708 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal'",
"hash": "kvhqocti2rfhee7fvx62pg2g57ktkv7s"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 620,
"repeat_count": 0,
"start": 614,
"end": 627,
"text": ">> 12707 make[1]: *** [install-recursive] Error 1",
"pre_context": " -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'\n >> 12705 make[2]: *** [install-am] Error 2\n 12706 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'",
"post_context": " 12708 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal'\n >> 12709 make: *** [install-recursive] Error 1\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-build-out.txt",
"hash": "kvhqocti2rfhee7fvx62pg2g57ktkv7s"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 623,
"repeat_count": 0,
"start": 617,
"end": 630,
"text": ">> 12709 make: *** [install-recursive] Error 1",
"pre_context": " 12706 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal/et\n c'\n >> 12707 make[1]: *** [install-recursive] Error 1\n 12708 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-src/opal'",
"post_context": "\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.2.4-o4aotgcite2gis4wn7sbf2xulj4cjrkr/spack-build-out.txt\n\nTraceback (most recent call last):\n File \"/p/vast1/koparasy/BUILD/head/spack/lib/spack/spack/build_environment.py\", line 1035, in _setup_pkg_and_run",
"hash": "kvhqocti2rfhee7fvx62pg2g57ktkv7s"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 594,
"repeat_count": 0,
"start": 588,
"end": 601,
"text": ">> 2174 configure: error: no BPatch.h found; check path for Dyninst packa",
"pre_context": " 2168 checking whether linking with -ldl works... yes\n 2169 checking whether RTLD_DEFAULT is declared... yes\n 2170 checking whether RTLD_NEXT is declared... yes\n 2171 checking BPatch.h usability... no\n 2172 checking BPatch.h presence... no\n 2173 checking for BPatch.h... no",
"post_context": " ge first...\n 2175 checking for tau_instrumentor... no\n >> 2176 configure: error: no tau_instrumentor found; check path for PDToo\n lkit first...\n 2177 configure: we are configuring inside Open MPI; presetting cache t\n o skip MPI related tests",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 597,
"repeat_count": 0,
"start": 591,
"end": 604,
"text": ">> 2176 configure: error: no tau_instrumentor found; check path for PDToo",
"pre_context": " 2171 checking BPatch.h usability... no\n 2172 checking BPatch.h presence... no\n 2173 checking for BPatch.h... no\n >> 2174 configure: error: no BPatch.h found; check path for Dyninst packa\n ge first...\n 2175 checking for tau_instrumentor... no",
"post_context": " lkit first...\n 2177 configure: we are configuring inside Open MPI; presetting cache t\n o skip MPI related tests\n 2178 checking for mpicc... (cached) /p/vast1/koparasy/BUILD/head/spack\n /lib/spack/env/gcc/gcc\n 2179 checking for mpicxx... (cached) /p/vast1/koparasy/BUILD/head/spac",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 617,
"repeat_count": 0,
"start": 611,
"end": 624,
"text": ">> 2196 configure: error: MPI Correctness Checking support cannot be buil",
"pre_context": " 2190 checking for PMPI_Win_unlock... (cached) yes\n 2191 checking for MPI_Register_datarep... (cached) yes\n 2192 checking for PMPI_File_read_ordered... (cached) yes\n 2193 checking for PMPI_File_read_ordered_begin... (cached) yes\n 2194 checking for PMPI_File_write_ordered... (cached) yes\n 2195 checking for PMPI_File_write_ordered_begin... (cached) yes",
"post_context": " t inside Open MPI\n 2197 checking math.h usability... yes\n 2198 checking math.h presence... yes\n 2199 checking for math.h... yes\n 2200 checking whether we need to link -lm to get math functions... no\n 2201 checking f2c.h usability... no",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 626,
"repeat_count": 0,
"start": 620,
"end": 633,
"text": ">> 2204 configure: error: no f2c.h found; check path for CLAPACK package",
"pre_context": " 2198 checking math.h presence... yes\n 2199 checking for math.h... yes\n 2200 checking whether we need to link -lm to get math functions... no\n 2201 checking f2c.h usability... no\n 2202 checking f2c.h presence... no\n 2203 checking for f2c.h... no",
"post_context": " first...\n 2205 checking for C++ runtime library... -lstdc++\n 2206 checking for the pthreads library -lpthreads... no\n 2207 checking whether pthreads work without any flags... yes\n 2208 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABL\n E",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 645,
"repeat_count": 0,
"start": 639,
"end": 652,
"text": ">> 2226 configure: error: no jvmti.h found; check path for JVMTI package",
"pre_context": " 2220 checking omp.h presence... yes\n 2221 checking for omp.h... yes\n 2222 checking whether we can build shared libraries... yes\n 2223 checking jvmti.h usability... no\n 2224 checking jvmti.h presence... no\n 2225 checking for jvmti.h... no",
"post_context": " first...\n 2227 checking papi.h usability... yes\n 2228 checking papi.h presence... yes\n 2229 checking for papi.h... yes\n 2230 checking whether linking with -lpapi works... yes\n 2231 checking whether PAPI version >= 3... yes",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 662,
"repeat_count": 0,
"start": 656,
"end": 669,
"text": ">> 2256 configure: error: no cuda.h found; check path for CUDA Toolkit fi",
"pre_context": " 2250 checking for sched.h... yes\n 2251 checking for sched_getcpu... yes\n 2252 checking whether sched_getcpu works... yes\n 2253 checking cuda.h usability... no\n 2254 checking cuda.h presence... no\n 2255 checking for cuda.h... no",
"post_context": " rst...\n 2257 checking cuda_runtime_api.h usability... no\n 2258 checking cuda_runtime_api.h presence... no\n 2259 checking for cuda_runtime_api.h... no\n >> 2260 configure: error: no cuda_runtime_api.h found; check path for CUD\n A Toolkit first...",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 667,
"repeat_count": 0,
"start": 661,
"end": 674,
"text": ">> 2260 configure: error: no cuda_runtime_api.h found; check path for CUD",
"pre_context": " 2255 checking for cuda.h... no\n >> 2256 configure: error: no cuda.h found; check path for CUDA Toolkit fi\n rst...\n 2257 checking cuda_runtime_api.h usability... no\n 2258 checking cuda_runtime_api.h presence... no\n 2259 checking for cuda_runtime_api.h... no",
"post_context": " A Toolkit first...\n 2261 checking cupti.h usability... no\n 2262 checking cupti.h presence... no\n 2263 checking for cupti.h... no\n >> 2264 configure: error: no cupti.h found; check path for CUPTI package\n first...",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 672,
"repeat_count": 0,
"start": 666,
"end": 679,
"text": ">> 2264 configure: error: no cupti.h found; check path for CUPTI package",
"pre_context": " 2259 checking for cuda_runtime_api.h... no\n >> 2260 configure: error: no cuda_runtime_api.h found; check path for CUD\n A Toolkit first...\n 2261 checking cupti.h usability... no\n 2262 checking cupti.h presence... no\n 2263 checking for cupti.h... no",
"post_context": " first...\n 2265 checking for dlfcn.h... (cached) yes\n 2266 checking whether linking with -ldl works... yes\n 2267 checking whether RTLD_DEFAULT is declared... (cached) yes\n 2268 checking whether RTLD_NEXT is declared... (cached) yes\n 2269 checking ctool/ctool.h usability... no",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 681,
"repeat_count": 0,
"start": 675,
"end": 688,
"text": ">> 2272 configure: error: no ctool/ctool.h found; check path for CTool pa",
"pre_context": " 2266 checking whether linking with -ldl works... yes\n 2267 checking whether RTLD_DEFAULT is declared... (cached) yes\n 2268 checking whether RTLD_NEXT is declared... (cached) yes\n 2269 checking ctool/ctool.h usability... no\n 2270 checking ctool/ctool.h presence... no\n 2271 checking for ctool/ctool.h... no",
"post_context": " ckage first...\n 2273 checking for LIBC's pathname... /lib64/libc.so.6\n 2274 checking for fork... yes\n 2275 checking for execl... yes\n 2276 checking for execle... yes\n 2277 checking for execlp... yes",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 700,
"repeat_count": 0,
"start": 694,
"end": 707,
"text": ">> 2406 configure: error: no vtf3.h found; check path for VTF3 package fi",
"pre_context": " 2401 checking for mpic++... /p/vast1/koparasy/BUILD/head/spack/lib/spa\n ck/env/gcc/g++\n 2402 checking for OpenMP flag of C++ compiler... -fopenmp\n 2403 checking vtf3.h usability... no\n 2404 checking vtf3.h presence... no\n 2405 checking for vtf3.h... no",
"post_context": " rst...\n 2407 checking zlib.h usability... yes\n 2408 checking zlib.h presence... yes\n 2409 checking for zlib.h... yes\n 2410 checking whether linking with -lm works... yes\n 2411 checking whether we need to link -lm to get math functions... no",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 719,
"repeat_count": 0,
"start": 713,
"end": 726,
"text": ">> 18543 vt_metric_papi.c:263:3: error: too many arguments to function 'PA",
"pre_context": " 18539 In file included from vt_metric_papi.c:22:\n 18540 /usr/include/papi.h:1060:29: note: expected 'char *' but argument\n is of type 'int'\n 18541 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 18542 | ~~~~~~^~~",
"post_context": " PI_perror'\n 18544 263 | PAPI_perror(errcode, errstring, PAPI_MAX_STR_LEN);\n 18545 | ^~~~~~~~~~~\n 18546 In file included from vt_metric_papi.c:22:\n 18547 /usr/include/papi.h:1060:11: note: declared here\n 18548 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 739,
"repeat_count": 0,
"start": 733,
"end": 746,
"text": ">> 18560 vt_metric_papi.c:277:3: error: too many arguments to function 'PA",
"pre_context": " 18556 In file included from vt_metric_papi.c:22:\n 18557 /usr/include/papi.h:1060:29: note: expected 'char *' but argument\n is of type 'int'\n 18558 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 18559 | ~~~~~~^~~",
"post_context": " PI_perror'\n 18561 277 | PAPI_perror(errcode, errstring, PAPI_MAX_STR_LEN);\n 18562 | ^~~~~~~~~~~\n 18563 In file included from vt_metric_papi.c:22:\n 18564 /usr/include/papi.h:1060:11: note: declared here\n 18565 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 748,
"repeat_count": 0,
"start": 742,
"end": 755,
"text": ">> 18567 make[5]: *** [vt_metric_papi.lo] Error 1",
"pre_context": " 18562 | ^~~~~~~~~~~\n 18563 In file included from vt_metric_papi.c:22:\n 18564 /usr/include/papi.h:1060:11: note: declared here\n 18565 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 18566 | ^~~~~~~~~~~",
"post_context": " 18568 make[5]: *** Waiting for unfinished jobs....\n 18569 libtool: compile: /p/vast1/koparasy/BUILD/head/spack/lib/spack/e\n nv/gcc/gcc -DHAVE_CONFIG_H -I. -I/var/tmp/koparasy/spack-stage/sp\n ack-stage-openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-sr\n c/ompi/contrib/vt/vt/vtlib -I.. -I/var/tmp/koparasy/spack-stage/s\n pack-stage-openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-s",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 816,
"repeat_count": 0,
"start": 810,
"end": 823,
"text": ">> 18576 make[4]: *** [all-recursive] Error 1",
"pre_context": " g -pthread -MT vt_iowrap.lo -MD -MP -MF .deps/vt_iowrap.Tpo -c vt\n _iowrap.c -o vt_iowrap.o >/dev/null 2>&1\n 18574 mv -f .deps/vt_iowrap.Tpo .deps/vt_iowrap.Plo\n 18575 make[5]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt/vtlib'",
"post_context": " 18577 make[4]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'\n >> 18578 make[3]: *** [all] Error 2\n 18579 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 820,
"repeat_count": 0,
"start": 814,
"end": 827,
"text": ">> 18578 make[3]: *** [all] Error 2",
"pre_context": " -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt/vtlib'\n >> 18576 make[4]: *** [all-recursive] Error 1\n 18577 make[4]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'",
"post_context": " 18579 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'\n >> 18580 make[2]: *** [all-recursive] Error 1\n 18581 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 824,
"repeat_count": 0,
"start": 818,
"end": 831,
"text": ">> 18580 make[2]: *** [all-recursive] Error 1",
"pre_context": " -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'\n >> 18578 make[3]: *** [all] Error 2\n 18579 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'",
"post_context": " 18581 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt'\n >> 18582 make[1]: *** [all-recursive] Error 1\n 18583 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi'",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 828,
"repeat_count": 0,
"start": 822,
"end": 835,
"text": ">> 18582 make[1]: *** [all-recursive] Error 1",
"pre_context": " -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt/vt'\n >> 18580 make[2]: *** [all-recursive] Error 1\n 18581 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt'",
"post_context": " 18583 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi'\n >> 18584 make: *** [all-recursive] Error 1\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-build-out.txt",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 831,
"repeat_count": 0,
"start": 825,
"end": 838,
"text": ">> 18584 make: *** [all-recursive] Error 1",
"pre_context": " 18581 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi/co\n ntrib/vt'\n >> 18582 make[1]: *** [all-recursive] Error 1\n 18583 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-src/ompi'",
"post_context": "\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.5.5-y4dgqkk5dzbznuk2dcizui3meclk2t7w/spack-build-out.txt\n\nTraceback (most recent call last):\n File \"/p/vast1/koparasy/BUILD/head/spack/lib/spack/spack/build_environment.py\", line 1035, in _setup_pkg_and_run",
"hash": "pcgu67urbf67fjcbfxfyleqpe5ibnh3j"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 594,
"repeat_count": 0,
"start": 588,
"end": 601,
"text": ">> 2141 configure: error: no vtf3.h found; check path for VTF3 package fi",
"pre_context": " 2135 checking dynamic linker characteristics... GNU/Linux ld.so\n 2136 checking how to hardcode library paths into programs... immediate\n 2137 checking for OpenMP flag of C++ compiler... -fopenmp\n 2138 checking vtf3.h usability... no\n 2139 checking vtf3.h presence... no\n 2140 checking for vtf3.h... no",
"post_context": " rst...\n 2142 checking zlib.h usability... yes\n 2143 checking zlib.h presence... yes\n 2144 checking for zlib.h... yes\n 2145 checking whether linking with -lm works... yes\n 2146 checking whether we need to link -lm to get math functions... no",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 611,
"repeat_count": 0,
"start": 605,
"end": 618,
"text": ">> 2205 configure: error: no BPatch.h found; check path for Dyninst packa",
"pre_context": " 2199 checking whether linking with -ldl works... yes\n 2200 checking whether RTLD_DEFAULT is declared... yes\n 2201 checking whether RTLD_NEXT is declared... yes\n 2202 checking BPatch.h usability... no\n 2203 checking BPatch.h presence... no\n 2204 checking for BPatch.h... no",
"post_context": " ge first...\n 2206 configure: we are configuring inside Open MPI; presetting cache t\n o skip MPI related tests\n 2207 checking for mpicc... (cached) /p/vast1/koparasy/BUILD/head/spack\n /lib/spack/env/gcc/gcc\n 2208 checking for mpicxx... (cached) /p/vast1/koparasy/BUILD/head/spac",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 631,
"repeat_count": 0,
"start": 625,
"end": 638,
"text": ">> 2220 configure: error: no f2c.h found; check path for CLAPACK package",
"pre_context": " 2214 checking math.h presence... yes\n 2215 checking for math.h... yes\n 2216 checking whether we need to link -lm to get math functions... no\n 2217 checking f2c.h usability... no\n 2218 checking f2c.h presence... no\n 2219 checking for f2c.h... no",
"post_context": " first...\n >> 2221 configure: error: MPI Correctness Checking support cannot be buil\n t inside Open MPI\n 2222 checking for the pthreads library -lpthreads... no\n 2223 checking whether pthreads work without any flags... yes\n 2224 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABL",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 633,
"repeat_count": 0,
"start": 627,
"end": 640,
"text": ">> 2221 configure: error: MPI Correctness Checking support cannot be buil",
"pre_context": " 2216 checking whether we need to link -lm to get math functions... no\n 2217 checking f2c.h usability... no\n 2218 checking f2c.h presence... no\n 2219 checking for f2c.h... no\n >> 2220 configure: error: no f2c.h found; check path for CLAPACK package\n first...",
"post_context": " t inside Open MPI\n 2222 checking for the pthreads library -lpthreads... no\n 2223 checking whether pthreads work without any flags... yes\n 2224 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABL\n E\n 2225 checking if more special flags are required for pthreads... no",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 652,
"repeat_count": 0,
"start": 646,
"end": 659,
"text": ">> 2242 configure: error: no jvmti.h found; check path for JVMTI package",
"pre_context": " 2236 checking omp.h presence... yes\n 2237 checking for omp.h... yes\n 2238 checking whether we can build shared libraries... yes\n 2239 checking jvmti.h usability... no\n 2240 checking jvmti.h presence... no\n 2241 checking for jvmti.h... no",
"post_context": " first...\n 2243 configure: selected timer: TIMER_CYCLE_COUNTER\n 2244 configure: global timer: no\n 2245 checking papi.h usability... yes\n 2246 checking papi.h presence... yes\n 2247 checking for papi.h... yes",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 669,
"repeat_count": 0,
"start": 663,
"end": 676,
"text": ">> 2273 configure: error: no ctool/ctool.h found; check path for CTool pa",
"pre_context": " 2267 checking whether linking with -ldl works... yes\n 2268 checking whether RTLD_DEFAULT is declared... (cached) yes\n 2269 checking whether RTLD_NEXT is declared... (cached) yes\n 2270 checking ctool/ctool.h usability... no\n 2271 checking ctool/ctool.h presence... no\n 2272 checking for ctool/ctool.h... no",
"post_context": " ckage first...\n 2274 checking for LIBC's pathname... /lib64/libc.so.6\n 2275 checking for fork... yes\n 2276 checking for execl... yes\n 2277 checking for execle... yes\n 2278 checking for execlp... yes",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 688,
"repeat_count": 0,
"start": 682,
"end": 695,
"text": ">> 17820 vt_metric_papi.c:262:3: error: too many arguments to function 'PA",
"pre_context": " 17816 In file included from vt_metric_papi.c:23:\n 17817 /usr/include/papi.h:1060:29: note: expected 'char *' but argument\n is of type 'int'\n 17818 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 17819 | ~~~~~~^~~",
"post_context": " PI_perror'\n 17821 262 | PAPI_perror(errcode, errstring, PAPI_MAX_STR_LEN);\n 17822 | ^~~~~~~~~~~\n 17823 In file included from vt_metric_papi.c:23:\n 17824 /usr/include/papi.h:1060:11: note: declared here\n 17825 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 708,
"repeat_count": 0,
"start": 702,
"end": 715,
"text": ">> 17837 vt_metric_papi.c:276:3: error: too many arguments to function 'PA",
"pre_context": " 17833 In file included from vt_metric_papi.c:23:\n 17834 /usr/include/papi.h:1060:29: note: expected 'char *' but argument\n is of type 'int'\n 17835 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 17836 | ~~~~~~^~~",
"post_context": " PI_perror'\n 17838 276 | PAPI_perror(errcode, errstring, PAPI_MAX_STR_LEN);\n 17839 | ^~~~~~~~~~~\n 17840 In file included from vt_metric_papi.c:23:\n 17841 /usr/include/papi.h:1060:11: note: declared here\n 17842 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 717,
"repeat_count": 0,
"start": 711,
"end": 724,
"text": ">> 17844 make[5]: *** [vt_metric_papi.lo] Error 1",
"pre_context": " 17839 | ^~~~~~~~~~~\n 17840 In file included from vt_metric_papi.c:23:\n 17841 /usr/include/papi.h:1060:11: note: declared here\n 17842 1060 | void PAPI_perror(char *msg ); /**< Print a PAPI erro\n r message */\n 17843 | ^~~~~~~~~~~",
"post_context": " 17845 make[5]: *** Waiting for unfinished jobs....\n 17846 libtool: compile: /p/vast1/koparasy/BUILD/head/spack/lib/spack/e\n nv/gcc/gcc -DHAVE_CONFIG_H -I. -I/var/tmp/koparasy/spack-stage/sp\n ack-stage-openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-sr\n c/ompi/contrib/vt/vt/vtlib -I.. -I/var/tmp/koparasy/spack-stage/s\n pack-stage-openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-s",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 761,
"repeat_count": 0,
"start": 755,
"end": 768,
"text": ">> 17853 make[4]: *** [all-recursive] Error 1",
"pre_context": " 17849 mv -f .deps/vt_rusage.Tpo .deps/vt_rusage.Plo\n 17850 mv -f .deps/rfg_filter.Tpo .deps/rfg_filter.Plo\n 17851 mv -f .deps/vt_iowrap.Tpo .deps/vt_iowrap.Plo\n 17852 make[5]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt/vtlib'",
"post_context": " 17854 make[4]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'\n >> 17855 make[3]: *** [all] Error 2\n 17856 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 765,
"repeat_count": 0,
"start": 759,
"end": 772,
"text": ">> 17855 make[3]: *** [all] Error 2",
"pre_context": " -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt/vtlib'\n >> 17853 make[4]: *** [all-recursive] Error 1\n 17854 make[4]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'",
"post_context": " 17856 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'\n >> 17857 make[2]: *** [all-recursive] Error 1\n 17858 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 769,
"repeat_count": 0,
"start": 763,
"end": 776,
"text": ">> 17857 make[2]: *** [all-recursive] Error 1",
"pre_context": " -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'\n >> 17855 make[3]: *** [all] Error 2\n 17856 make[3]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'",
"post_context": " 17858 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt'\n >> 17859 make[1]: *** [all-recursive] Error 1\n 17860 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi'",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 773,
"repeat_count": 0,
"start": 767,
"end": 780,
"text": ">> 17859 make[1]: *** [all-recursive] Error 1",
"pre_context": " -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt/vt'\n >> 17857 make[2]: *** [all-recursive] Error 1\n 17858 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt'",
"post_context": " 17860 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi'\n >> 17861 make: *** [all-recursive] Error 1\n\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-build-out.txt",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
},
{
"phase": "N/A",
"source_file": [
null
],
"source_line_no": 0,
"line_no": 776,
"repeat_count": 0,
"start": 770,
"end": 783,
"text": ">> 17861 make: *** [all-recursive] Error 1",
"pre_context": " 17858 make[2]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi/co\n ntrib/vt'\n >> 17859 make[1]: *** [all-recursive] Error 1\n 17860 make[1]: Leaving directory `/tmp/koparasy/spack-stage/spack-stage\n -openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-src/ompi'",
"post_context": "\nSee build log for details:\n /var/tmp/koparasy/spack-stage/spack-stage-openmpi-1.5.1-bbtmek57tqdx2fs2exhngxbvggyz4nh7/spack-build-out.txt\n\nTraceback (most recent call last):\n File \"/p/vast1/koparasy/BUILD/head/spack/lib/spack/spack/build_environment.py\", line 1035, in _setup_pkg_and_run",
"hash": "wiocnvqedio4fgc3dlhyskciivywftw4"
}
]