Skip to content

Latest commit

 

History

History
80 lines (42 loc) · 1.75 KB

slave.md

File metadata and controls

80 lines (42 loc) · 1.75 KB

slave server

General info

  • IP: 54.77.29.115
  • Instance type: m3.large

Python package

Installed with apt

  • scipy == 0.13.3-1build1
  • sklearn == 0.14.1-2

Installed with pip

  • celery == 3.1.12
  • biom-format == 1.3.1

Installed with source

Installation command

sudo easy_intall mlpy-3.5.0.tar.gz

Celery

Init script

Locate init script in /etc/init.d

Config

Locate celeryd in /etc/default

User

useradd -d /opt/Pipeline -g celery -s /bin/bash celery

Biological software

mothur

Installed with apt: 1.31.2+dfsg-2build1

qiime

Installed with apt: 1.8.0+dfsg-2

Config

Locate qiime_config in /etc/qiime and create symlink at /home/ubuntu/.qiime_config and /opt/Pipeline/.qiime_config

FastTree

Locate FastTree in /usr/local/bin

Greengenes OTU

Locate 13_8 in /usr/share/qiime/gg_13_8_otus

Greengenes core

Locate greengenes core set data file and greengenes alignment lanemask file in /usr/share/qiime/greengenes_core_sets

/etc/bash.bashrc

source /usr/lib/qiime/shell/qiime_environment

NFS

/etc/default/nfs-common

STATDOPTS="--port 49151 --outgoing-port 49152"

Pipeline

Clone pipeline in /opt/Pipeline