From a4ffa130bb8bb02dd565de79c7ca1e45987f7b77 Mon Sep 17 00:00:00 2001 From: richelbilderbeek Date: Tue, 14 Jan 2025 15:58:57 +0100 Subject: [PATCH] Fix links --- docs/beginner/exercises.md | 2 +- docs/beginner/slurm_intro.md | 6 +++--- docs/evaluations/20240419/README.md | 2 +- docs/intermediate/install.md | 2 +- docs/intermediate/prevaluation_intermediate.md | 2 +- docs/lesson_plans/20241111/20241111_richel.md | 2 +- docs/lesson_plans/README.md | 12 ++++++------ docs/reflections/README.md | 12 ++++++------ 8 files changed, 20 insertions(+), 20 deletions(-) diff --git a/docs/beginner/exercises.md b/docs/beginner/exercises.md index e46c90d9..267c9ecd 100644 --- a/docs/beginner/exercises.md +++ b/docs/beginner/exercises.md @@ -8,7 +8,7 @@ ???+ question "View in IGV" - - Load the genome, the bam file, and the annotated *vcf* that we got from the [demo](https://uppmax.github.io/bianca_workshops/modules/#workflows) into IGV for viewing + - Load the genome, the bam file, and the annotated *vcf* that we got from the [demo](https://uppmax.github.io/bianca_workshops/modules) into IGV for viewing ??? tip "Answer" diff --git a/docs/beginner/slurm_intro.md b/docs/beginner/slurm_intro.md index 7eb93922..682e78ce 100644 --- a/docs/beginner/slurm_intro.md +++ b/docs/beginner/slurm_intro.md @@ -355,9 +355,9 @@ srun echo Hello world! Intermediate workshop material on Slurm: - - [complex jobs](intermediate/complex_jobs.md) - - [efficient jobs](intermediate/efficient_jobs.md) - - [replicate jobs](intermediate/complex_jobs.md) + - [complex jobs](../intermediate/complex_jobs.md) + - [efficient jobs](../intermediate/efficient_jobs.md) + - [replicate jobs](../intermediate/complex_jobs.md) !!! admonition "Slurm Cheat Sheet" diff --git a/docs/evaluations/20240419/README.md b/docs/evaluations/20240419/README.md index c43fb47c..fa25d958 100644 --- a/docs/evaluations/20240419/README.md +++ b/docs/evaluations/20240419/README.md @@ -9,7 +9,7 @@ This is an anonymous evaluation and will ideally be published in raw form at -https://github.com/UPPMAX/bianca_workshops/tree/main/evaluations/20240419 . +https://uppmax.github.io/bianca_workshops/evaluations/20240419/ . To do so, please do not share sensitive data here! Below are tallies, i.e. add one character behind each diff --git a/docs/intermediate/install.md b/docs/intermediate/install.md index b4ec1ea6..d8cdb7df 100644 --- a/docs/intermediate/install.md +++ b/docs/intermediate/install.md @@ -41,7 +41,7 @@ ???- tip "Forgot how to use the module system?" - See [the basic Bianca course page 'Using the module system'](../modules.md). + See [the basic Bianca course page 'Using the module system'](../beginner/modules.md). - **Lots of programs and tools installed as modules** on Bianca. - You can **request installations** but that **may take several days or weeks** to be handled by the application experts at UPPMAX. diff --git a/docs/intermediate/prevaluation_intermediate.md b/docs/intermediate/prevaluation_intermediate.md index 66befa42..2fd7cbdb 100644 --- a/docs/intermediate/prevaluation_intermediate.md +++ b/docs/intermediate/prevaluation_intermediate.md @@ -11,7 +11,7 @@ The prevaluation form can be found `[not here anymore]`. ???- question "What do you mean with 'to measure how much knowledge is gained'?" - Here is [part of an evaluation](https://github.com/UPPMAX/bianca_workshops/blob/main/reflections/20240925/20240925_richel.md): + Here is [part of an evaluation](https://uppmax.github.io/bianca_workshops/evaluations/20240925/): ![Part of an evaluation](img/confidences_per_question_zoom.png) diff --git a/docs/lesson_plans/20241111/20241111_richel.md b/docs/lesson_plans/20241111/20241111_richel.md index ea6bf6ea..6ec647f3 100644 --- a/docs/lesson_plans/20241111/20241111_richel.md +++ b/docs/lesson_plans/20241111/20241111_richel.md @@ -64,7 +64,7 @@ Resulting in: - Know how to set up jobs efficiently Looking at the course material, including a -[PDF](https://github.com/UPPMAX/bianca_workshops/blob/main/docs/presentations/Bianca-Slurm-2023-12-Diana.pdf), +[PDF](https://github.com/UPPMAX/bianca_workshops/blob/main/docs/beginner/presentations/Bianca-Slurm-2023-12-Diana.pdf), I infer more learning objectives: - Schedule dependent jobs diff --git a/docs/lesson_plans/README.md b/docs/lesson_plans/README.md index ec9a0ef9..e5ce57d1 100644 --- a/docs/lesson_plans/README.md +++ b/docs/lesson_plans/README.md @@ -4,9 +4,9 @@ TODO: split per course Iteration |Evaluation results ----------|----------------------------- -?1 |[20230911](20230911/README.md) -?2 |[20231211](20231211/README.md) -?3 |[20240419](20240419/README.md) -?4 |[20240419](20240524/README.md) -?5 |[20240925](20240925/README.md) -?6 |[20240925](20241111/README.md) +?1 |[20230911 by Richel](20230911/20230911_richel.md) +?2 |[20231211 by Richel](20231211/20231211_richel.md) +?3 |[20240419 by Richel](20240419/20240419_richel.md) +?4 |[20240524 by Richel](20240419/20240419_richel.md) +?5 |[20240925 by Richel](20240419/20240419_richel.md) +?6 |[20241111 by Richel](20241111/20241111_richel.md) diff --git a/docs/reflections/README.md b/docs/reflections/README.md index 33408a04..63659ddd 100644 --- a/docs/reflections/README.md +++ b/docs/reflections/README.md @@ -4,9 +4,9 @@ TODO: split per course Iteration |Evaluation results ----------|----------------------------- -?1 |[20230911](20230911/README.md) -?2 |[20231211](20231211/README.md) -?3 |[20240419](20240419/README.md) -?4 |[20240419](20240524/README.md) -?5 |[20240925](20240925/README.md) -?6 |[20240925](20241111/README.md) +?1 |[20230911 by Richel](20230911/20230911_richel.md) +?2 |[20231211 by Richel](20231211/20231211_richel.md) +?3 |[20240419 by Richel](20240419/20240419_richel.md) +?4 |[20240524 by Richel](20240524/20240524_richel.md) +?5 |[20240925 by Richel](20240925/20240925_richel.md) +?6 |[20241111 by Richel](20241111/20241111_richel.md)