diff --git a/CHANGELOG.md b/CHANGELOG.md index 4789378e..3619183e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,15 @@ +## [2.15.3](https://github.com/PharmGKB/PharmCAT/compare/v2.15.2...v2.15.3) (2024-08-28) + +### Bug Fixes + +* **data:** track singular variants ([fb1ebbd](https://github.com/PharmGKB/PharmCAT/commit/fb1ebbd13cc0376fbd62876d4a2eca07bd6373fc)) +* **data:** update data ([c8100ec](https://github.com/PharmGKB/PharmCAT/commit/c8100ec878f6d0731ba9f1403f1a5ecb91061abb)) +* **namedallelematcher:** fix permutation generation with mix of phased/unphased data ([2146db0](https://github.com/PharmGKB/PharmCAT/commit/2146db07f78724c92c375378cc98e8fbbe351e31)) +* **phenotyper:** improve support for combinations in outside calls ([b1a6deb](https://github.com/PharmGKB/PharmCAT/commit/b1a6debd266e5ba65ea1dd05b6e5dd19a0c3beb8)) +* **reporter:** fix limiting reports by source ([ac0c52e](https://github.com/PharmGKB/PharmCAT/commit/ac0c52e31c5026895200ee9d1914fb6076fb42bb)) +* **reporter:** fix matching diplotype-specific recommendations ([11fc7b4](https://github.com/PharmGKB/PharmCAT/commit/11fc7b4a1d40f8ef015111c35887ca19f2c43103)) +* **reporter:** take subsetting into account when calculating total genes ([6ef47cc](https://github.com/PharmGKB/PharmCAT/commit/6ef47ccb722897fc94b531229809074e57bda6ee)) + ## [2.15.2](https://github.com/PharmGKB/PharmCAT/compare/v2.15.1...v2.15.2) (2024-08-20) ### Bug Fixes diff --git a/dockstore/pipeline/PharmCAT_Pipeline.wdl b/dockstore/pipeline/PharmCAT_Pipeline.wdl index 3e058c65..aee2bb8b 100644 --- a/dockstore/pipeline/PharmCAT_Pipeline.wdl +++ b/dockstore/pipeline/PharmCAT_Pipeline.wdl @@ -144,7 +144,7 @@ task pharmcat_pipeline_task { } runtime { - docker: "pgkb/pharmcat:2.13.0" + docker: "pgkb/pharmcat:2.15.3" memory: max_memory cpu: max_concurrent_processes } diff --git a/dockstore/pipeline/README.md b/dockstore/pipeline/README.md index 44c0967b..3df9972d 100644 --- a/dockstore/pipeline/README.md +++ b/dockstore/pipeline/README.md @@ -119,7 +119,7 @@ Successfully tested on v53 and v87. ### PharmCAT Version -PharmCAT v2.15.2. +PharmCAT v2.15.3. ## Contact diff --git a/docs/index.md b/docs/index.md index b1207dc4..2c0ea91c 100644 --- a/docs/index.md +++ b/docs/index.md @@ -3,7 +3,7 @@ title: Home permalink: / nav_order: 1 # version is dynamically updated - DO NOT MODIFY MANUALLY -pharmcat_version: 2.15.2 +pharmcat_version: 2.15.3 --- # PharmCAT:
Pharmacogenomics Clinical Annotation Tool diff --git a/package.json b/package.json index 0f512955..f83b367f 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "pharmcat", - "version": "2.15.2", + "version": "2.15.3", "repository": { "type": "git", "url": "https://github.com/PharmGKB/PharmCAT.git" diff --git a/preprocessor/preprocessor/common.py b/preprocessor/preprocessor/common.py index 4f0a0d4f..64896ed6 100644 --- a/preprocessor/preprocessor/common.py +++ b/preprocessor/preprocessor/common.py @@ -2,7 +2,7 @@ # version is dynamically updated - DO NOT MODIFY MANUALLY -PHARMCAT_VERSION = '2.15.2' +PHARMCAT_VERSION = '2.15.3' # expected tool versions MIN_BCFTOOLS_VERSION = '1.18'