From 09c2be3e462294fcf4951b8346d35aa4037ef400 Mon Sep 17 00:00:00 2001
From: semantic-release-bot <semantic-release-bot@martynus.net>
Date: Wed, 17 Jan 2024 21:55:03 +0000
Subject: [PATCH] chore(release): 2.9.0

## [2.9.0](https://github.com/PharmGKB/PharmCAT/compare/v2.8.3...v2.9.0) (2024-1-17)

### Features

* **data:** update to CPIC version v1.35 ([5cb6717](https://github.com/PharmGKB/PharmCAT/commit/5cb671756393b82732c2ffeb5e06201d453cade3))
* **data:** update to PharmGKB version 2023-12-19 ([66c49f9](https://github.com/PharmGKB/PharmCAT/commit/66c49f9d584b9c3e72cb6488fc17ffc79e9442cd))
* **reporter:** add new "non-match" type of message ([f5df05a](https://github.com/PharmGKB/PharmCAT/commit/f5df05a0cf0c7edd8e91fc59644cb81ea0535504))

### Bug Fixes

* **namedallelematcher:** DPYD matching should ignore find-combinations mode ([153853a](https://github.com/PharmGKB/PharmCAT/commit/153853a36a79694002de3d92c5fd56ad17a113d2))
* **namedallelematcher:** improve AD number warning ([9d9a0b9](https://github.com/PharmGKB/PharmCAT/commit/9d9a0b98dbd5ea75ea5ab7476986f715125eb0a3)), closes [#168](https://github.com/PharmGKB/PharmCAT/issues/168)
* **phenotyper:** fix bug with stripping gene symbol from outside call diplotypes ([cb97898](https://github.com/PharmGKB/PharmCAT/commit/cb978987fc7e54386c1bd09e6caeba817e485de2)), closes [#161](https://github.com/PharmGKB/PharmCAT/issues/161)

### Performance Improvements

* improve runtime of diplotype comparison ([406930c](https://github.com/PharmGKB/PharmCAT/commit/406930cedffa551ed3e21331766c8f630a9b7881))
---
 CHANGELOG.md                        | 21 +++++++++++++++++++++
 docs/index.md                       |  2 +-
 package.json                        |  2 +-
 preprocessor/preprocessor/common.py |  2 +-
 4 files changed, 24 insertions(+), 3 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index ccf8b1e8b..c5719ff90 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,24 @@
+## [2.9.0](https://github.com/PharmGKB/PharmCAT/compare/v2.8.3...v2.9.0) (2024-1-17)
+
+
+### Features
+
+* **data:** update to CPIC version v1.35 ([5cb6717](https://github.com/PharmGKB/PharmCAT/commit/5cb671756393b82732c2ffeb5e06201d453cade3))
+* **data:** update to PharmGKB version 2023-12-19 ([66c49f9](https://github.com/PharmGKB/PharmCAT/commit/66c49f9d584b9c3e72cb6488fc17ffc79e9442cd))
+* **reporter:** add new "non-match" type of message ([f5df05a](https://github.com/PharmGKB/PharmCAT/commit/f5df05a0cf0c7edd8e91fc59644cb81ea0535504))
+
+
+### Bug Fixes
+
+* **namedallelematcher:** DPYD matching should ignore find-combinations mode ([153853a](https://github.com/PharmGKB/PharmCAT/commit/153853a36a79694002de3d92c5fd56ad17a113d2))
+* **namedallelematcher:** improve AD number warning ([9d9a0b9](https://github.com/PharmGKB/PharmCAT/commit/9d9a0b98dbd5ea75ea5ab7476986f715125eb0a3)), closes [#168](https://github.com/PharmGKB/PharmCAT/issues/168)
+* **phenotyper:** fix bug with stripping gene symbol from outside call diplotypes ([cb97898](https://github.com/PharmGKB/PharmCAT/commit/cb978987fc7e54386c1bd09e6caeba817e485de2)), closes [#161](https://github.com/PharmGKB/PharmCAT/issues/161)
+
+
+### Performance Improvements
+
+* improve runtime of diplotype comparison ([406930c](https://github.com/PharmGKB/PharmCAT/commit/406930cedffa551ed3e21331766c8f630a9b7881))
+
 ## [2.8.3](https://github.com/PharmGKB/PharmCAT/compare/v2.8.2...v2.8.3) (2023-10-24)
 
 
diff --git a/docs/index.md b/docs/index.md
index c4144302e..d563c7332 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -3,7 +3,7 @@ title: Home
 permalink: /
 nav_order: 1
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-pharmcat_version: 2.8.3
+pharmcat_version: 2.9.0
 ---
 
 # PharmCAT:<br />Pharmacogenomics Clinical Annotation Tool
diff --git a/package.json b/package.json
index b003f1dc7..a9bf17c2d 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "pharmcat",
-  "version": "2.8.3",
+  "version": "2.9.0",
   "repository": {
     "type": "git",
     "url": "https://github.com/PharmGKB/PharmCAT.git"
diff --git a/preprocessor/preprocessor/common.py b/preprocessor/preprocessor/common.py
index 70e667510..220999287 100644
--- a/preprocessor/preprocessor/common.py
+++ b/preprocessor/preprocessor/common.py
@@ -2,7 +2,7 @@
 
 
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-PHARMCAT_VERSION = '2.8.3'
+PHARMCAT_VERSION = '2.9.0'
 
 # expected tool versions
 MIN_BCFTOOLS_VERSION = '1.18'