diff --git a/BALSAMIC/workflows/reference.smk b/BALSAMIC/workflows/reference.smk index bb48ca8fe..5547400c6 100644 --- a/BALSAMIC/workflows/reference.smk +++ b/BALSAMIC/workflows/reference.smk @@ -171,7 +171,7 @@ rule download_reference: log_file = output_file + ".log" if ref.url.scheme == "gs": - cmd = "gsutil cp -L {} {} -".format(log_file, ref.url) + cmd = "export TMPDIR=/tmp; gsutil cp -L {} {} -".format(log_file, ref.url) else: cmd = "wget -a {} -O - {}".format(log_file, ref.url) diff --git a/requirements.txt b/requirements.txt index ad49079b2..487e85c74 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,7 +3,7 @@ colorclass>=2.2.0 coloredlogs>=14.0 cyvcf2<0.10.0 graphviz>=0.14 -gsutil>=4.50 +gsutil==4.50 jinja2>=2.11.2 matplotlib>=3.3.0 networkx>=2.4 @@ -20,3 +20,4 @@ yapf>=0.30.0 h5py>=3.1.0 PyPDF2>=1.26.0 markdown==3.3.3 +cryptography<3.4